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Article

Abascal, JF; Ducros, N; Pronina, V; Rit, S; Rodesch, PA; Broussaud, T; Bussod, S; ... Peyrin, F; + view all (2021) Material Decomposition in Spectral CT using deep learning: A Sim2Real transfer approach. IEEE Access , 9 pp. 25632-25647. 10.1109/ACCESS.2021.3056150. Green open access
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Alexander, D.C.; Barker , G.J.; Arridge, S.R.; (2002) Detection and modeling of non-Gaussian apparent diffusion coefficient profiles in human brain data. Magnetic Resonance in Medicine , 48 (2) pp. 331-340. 10.1002/mrm.10209. Green open access
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Arjas, Arttu; Alles, Erwin J; Maneas, Efthymios; Arridge, Simon; Desjardins, Adrien; Sillanpaa, Mikko J; Hauptmann, Andreas; (2022) Neural Network Kalman Filtering for 3-D Object Tracking From Linear Array Ultrasound Data. IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control , 69 (5) pp. 1691-1702. 10.1109/tuffc.2022.3162097. Green open access
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Arridge, S; Fernsel, P; Hauptmann, A; (2022) Joint reconstruction and low-rank decomposition for dynamic inverse problems. Inverse Problems and Imaging , 16 (3) pp. 483-523. 10.3934/ipi.2021059. Green open access
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Arridge, S; Beard, P; Betcke, M; Cox, B; Huynh, N; Lucka, F; Ogunlade, O; (2016) Accelerated High-Resolution Photoacoustic Tomography via Compressed Sensing. Physics in Medicine and Biology , 61 (24) pp. 8908-8940. 10.1088/1361-6560/61/24/8908. Green open access
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Arridge, S; Hauptmann, A; (2019) Networks for Nonlinear Diffusion Problems in Imaging. Journal of Mathematical Imaging and Vision 10.1007/s10851-019-00901-3. (In press). Green open access
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Arridge, S; Maass, P; Öktem, O; Schönlieb, CB; (2019) Solving inverse problems using data-driven models. Acta Numerica , 28 pp. 1-174. 10.1017/S0962492919000059. Green open access
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Arridge, SR; Betcke, MM; Cox, BT; Lucka, F; Treeby, BE; (2016) On the Adjoint Operator in Photoacoustic Tomography. Inverse Problems , 32 (11) , Article 115012. 10.1088/0266-5611/32/11/115012. Green open access
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Arridge, SR; Betcke, MM; Harhanen, L; (2014) Iterated preconditioned LSQR method for inverse problems on unstructured grids. INVERSE PROBLEMS , 30 (7) , Article ARTN 075009. 10.1088/0266-5611/30/7/075009. Green open access
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Arridge, SR; Ehrhardt, MJ; Thielemans, K; (2021) (An overview of) Synergistic reconstruction for multimodality/multichannel imaging methods. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences , 379 (2200) , Article 20200205. 10.1098/rsta.2020.0205. Green open access
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Arridge, SR; Ito, K; Jin, B; Zhang, C; (2018) Variational Gaussian approximation for Poisson data. Inverse Problems , 34 (2) , Article 025005. 10.1088/1361-6420/aaa0ab. Green open access
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Austin, T; Gibson, AP; Branco, G; Yusof, RM; Arridge, SR; Meek, JH; Wyatt, JS; ... Hebden, JC; + view all (2006) Three dimensional optical imaging of blood volume and oxygenation in the neonatal brain. Neuroimage , 31 (4) 1426 - 1433. 10.1016/j.neuroimage.2006.02.038. Green open access
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Ban, HY; Schweiger, MJ; Kavuri, VC; Cochran, JM; Xie, L; Busch, D; Katrašnik, J; ... Yodh, AG; + view all (2016) Heterodyne frequency-domain multispectral diffuse optical tomography of breast cancer in the parallel-plane transmission geometry. Medical Physics , 43 (7) pp. 4383-4395. 10.1118/1.4953830. Green open access
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Barbano, Riccardo; Denker, Alexander; Chung, Hyungjin; Roh, Tae Hoon; Arridge, Simon; Maass, Peter; Jin, Bangti; (2025) Steerable Conditional Diffusion for Out-of-Distribution Adaptation in Medical Image Reconstruction. IEEE Transactions on Medical Imaging 10.1109/tmi.2024.3524797. (In press). Green open access
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Barbano, Riccardo; Kereta, Zeljko; Hauptmann, Andreas; Arridge, Simon R; Jin, Bangti; (2022) Unsupervised knowledge-transfer for learned image reconstruction. Inverse Problems 10.1088/1361-6420/ac8a91. (In press). Green open access
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Bertolli, O; Arridge, S; Wollenweber, SD; Stearns, CW; Hutton, BF; Thielemans, K; (2017) Sign determination methods for the respiratory signal in data-driven PET gating. Physics in Medicine & Biology , 62 (8) , Article 3204. 10.1088/1361-6560/aa6052. Green open access
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Betcke, MM; Cox, BT; Huynh, N; Zhang, EZ; Beard, PC; Arridge, SR; (2017) Acoustic Wave Field Reconstruction From Compressed Measurements With Application in Photoacoustic Tomography. IEEE Transactions on Computational Imaging , 3 (4) pp. 710-721. 10.1109/TCI.2017.2706029. Green open access
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Bousse, A; Bertolli, O; Atkinson, D; Arridge, S; Ourselin, S; Hutton, B; Thielemans, K; (2015) Maximum-Likelihood Joint Image Reconstruction/Motion Estimation in Attenuation-Corrected Respiratory Gated PET/CT using a Single Attenuation Map. IEEE Trans Med Imaging , 35 (1) pp. 217-228. 10.1109/TMI.2015.2464156. Green open access
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Bousse, A; Bertolli, O; Atkinson, D; Arridge, S; Ourselin, S; Hutton, BF; Thielemans, K; (2016) Maximum-likelihood joint image reconstruction and motion estimation with misaligned attenuation in TOF-PET/CT. Physics in Medicine and Biology , 61 (3) L11-L19. 10.1088/0031-9155/61/3/L11. Green open access
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Bousse, A; Manber, R; Holman, BF; Atkinson, D; Arridge, S; Ourselin, S; Hutton, BF; (2017) Evaluation of a direct motion estimation/correction method in respiratory-gated PET/MRI with motion-adjusted attenuation. Med Phys 10.1002/mp.12253. (In press). Green open access
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Brusaferri, L; Bousse, A; Emond, EC; Brown, R; Tsai, Y-J; Atkinson, D; Ourselin, S; ... Thielemans, K; + view all (2020) Joint Activity and Attenuation Reconstruction from Multiple Energy Window Data with Photopeak Scatter Re-Estimation in non-TOF 3D PET. IEEE Transactions on Radiation and Plasma Medical Sciences 10.1109/trpms.2020.2978449. (In press). Green open access
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Brusaferri, L; Emond, EC; Bousse, A; Twyman, R; Whitehead, AC; Atkinson, D; Ourselin, S; ... Thielemans, K; + view all (2021) Detection Efficiency Modelling and Joint Activity and Attenuation Reconstruction in non-TOF 3D PET from Multiple-Energy Window Data. IEEE Transactions on Radiation and Plasma Medical Sciences p. 1. 10.1109/trpms.2021.3064239. (In press). Green open access
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Bulgarelli, C; Blasi, A; Arridge, S; Powell, S; de Klerk, C; Southgate, V; Brigadoi, S; ... Hamilton, A; + view all (2018) Dynamic causal modelling on infant fNIRS data: A validation study on a simultaneously recorded fNIRS-fMRI dataset. NeuroImage , 175 pp. 413-424. 10.1016/j.neuroimage.2018.04.022. Green open access
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Burgos, N; Cardoso, MJ; Thielemans, K; Modat, M; Dickson, J; Schott, JM; Atkinson, D; ... Ourselin, S; + view all (2015) Multi-contrast attenuation map synthesis for PET/MR scanners: assessment on FDG and Florbetapir PET tracers. European Journal of Nuclear Medicine and Molecular Imaging , 42 (9) pp. 1447-1458. 10.1007/s00259-015-3082-x. Green open access
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Burgos, N; Cardoso, MJ; Thielemans, K; Modat, M; Pedemonte, S; Dickson, J; Barnes, A; ... Ourselin, S; + view all (2014) Attenuation correction synthesis for hybrid PET-MR scanners: application to brain studies. IEEE Trans Med Imaging , 33 (12) 2332 - 2341. 10.1109/TMI.2014.2340135. Green open access
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Chaulet, N; Arridge, S; Betcke, T; Holder, D; (2014) The Factorization method for three dimensional Electrical Impedance Tomography. Inverse Problems , 30 (4) , Article 045005. 10.1088/0266-5611/30/4/045005. Green open access
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Cochran, JM; Busch, DR; Lin, L; Minkoff, DL; Schweiger, M; Arridge, S; Yodh, AG; (2019) Hybrid time-domain and continuous-wave diffuse optical tomography instrument with concurrent, clinical magnetic resonance imaging for breast cancer imaging. Journal of Biomedical Optics , 24 (5) , Article 051409. 10.1117/1.JBO.24.5.051409. Green open access
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Correia, T; Arridge, S; (2016) Patch-based anisotropic diffusion scheme for fluorescence diffuse optical tomography-part 1: technical principles. Physics in Medicine & Biology , 61 (4) pp. 1439-1451. 10.1088/0031-9155/61/4/1439. Green open access
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Correia, T; Koch, M; Ale, A; Ntziachristos, V; Arridge, S; (2016) Patch-based anisotropic diffusion scheme for fluorescence diffuse optical tomography-part 2: image reconstruction. Physics in Medicine & Biology , 61 (4) pp. 1452-1475. 10.1088/0031-9155/61/4/1452. Green open access
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Correia, T; Lockwood, N; Kumar, S; Yin, J; Ramel, MC; Andrews, N; Katan, M; ... Arridge, S; + view all (2015) Accelerated Optical Projection Tomography Applied to In Vivo Imaging of Zebrafish. PLoS One , 10 (8) , Article e0136213. 10.1371/journal.pone.0136213. Green open access
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Davis, SPX; Wisniewski, L; Kumar, S; Correia, T; Arridge, SR; Frankel, P; McGinty, J; (2018) Slice-illuminated optical projection tomography. Optics Letters , 43 (22) pp. 5555-5558. 10.1364/OL.43.005555. Green open access
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Di Sciacca, G; Maffeis, G; Farina, A; Dalla Mora, A; Pifferi, A; Taroni, P; Arridge, S; (2022) Evaluation of a pipeline for simulation, reconstruction, and classification in ultrasound-aided diffuse optical tomography of breast tumors. Journal of biomedical optics , 27 (3) , Article 036003. 10.1117/1.JBO.27.3.036003. Green open access
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Di Sciacca, G; Di Sieno, L; Farina, A; Lanka, P; Venturini, E; Panizza, P; Dalla Mora, A; ... Arridge, SR; + view all (2021) Enhanced diffuse optical tomographic reconstruction using concurrent ultrasound information. Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences , 379 (2204) , Article 20200195. 10.1098/rsta.2020.0195. Green open access
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Dikaios, N; Arridge, S; Hamy, V; Punwani, S; Atkinson, D; (2014) Direct parametric reconstruction from undersampled (k, t)-space data in dynamic contrast enhanced MRI. Medical Image Analysis , 18 (7) 989 - 1001. 10.1016/j.media.2014.05.001. Green open access
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Ehrhardt, MJ; Arridge, SR; (2014) Vector-Valued Image Processing by Parallel Level Sets. IEEE TRANSACTIONS ON IMAGE PROCESSING , 23 (1) 9 - 18. 10.1109/TIP.2013.2277775. Green open access
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Ehrhardt, MJ; Markiewicz, P; Liljeroth, M; Barnes, A; Kolehmainen, V; Duncan, JS; Pizarro, L; ... Arridge, SR; + view all (2016) PET Reconstruction with an Anatomical MRI Prior using Parallel Level Sets. IEEE Transactions on Medical Imaging , 35 (9) pp. 2189-2199. 10.1109/TMI.2016.2549601. Green open access
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Ehrhardt, MJ; Thielemans, K; Pizarro, L; Atkinson, D; Ourselin, S; Hutton, BF; Arridge, SR; (2015) Joint reconstruction of PET-MRI by exploiting structural similarity. INVERSE PROBLEMS , 31 (1) , Article ARTN 015001. 10.1088/0266-5611/31/1/015001. Green open access
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Erlandsson, K; Dickson, J; Arridge, S; Atkinson, D; Ourselin, S; Hutton, BF; (2016) MR Imaging-Guided Partial Volume Correction of PET Data in PET/MR Imaging. PET Clinics , 11 (2) pp. 161-177. 10.1016/j.cpet.2015.09.002. Green open access
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Erlandsson, K; Liljeroth, M; Atkinson, D; Arridge, S; Ourselin, S; Hutton, BF; (2016) Improved Parameter-Estimation With MRI-Constrained PET Kinetic Modeling: A Simulation Study. IEEE Transactions on Nuclear Science , 63 (5) pp. 2464-2470. 10.1109/TNS.2015.2507444. Green open access
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Farina, A; Betcke, M; di Sieno, L; Bassi, A; Ducros, N; Pifferi, A; Valentini, G; ... D'Andrea, C; + view all (2017) Multiple-view diffuse optical tomography system based on time-domain compressive measurements. Optics Letters , 42 (14) pp. 2822-2825. 10.1364/OL.42.002822. Green open access
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Farina, A; Candeo, A; Dalla Mora, A; Bassi, A; Lussana, R; Villa, F; Valentini, G; ... D'Andrea, C; + view all (2019) Novel time-resolved camera based on compressed sensing. Optics Express , 27 (22) pp. 31889-31899. 10.1364/OE.27.031889. Green open access
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Farina, A; Tagliabue, S; Di Sieno, L; Martinenghi, E; Durduran, T; Arridge, S; Martelli, F; ... Dalla Mora, A; + view all (2017) Time-Domain Functional Diffuse Optical Tomography System Based on Fiber-Free Silicon Photomultipliers. Applied Sciences , 7 (12) , Article 1235. 10.3390/app7121235. Green open access
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Ferocino, E; Pifferi, A; Arridge, S; Martelli, F; Taroni, P; Farina, A; (2019) Multi Simulation Platform for Time Domain Diffuse Optical Tomography: An Application to a Compact Hand-Held Reflectance Probe. Applied Science , 9 (14) , Article 2849. 10.3390/app9142849. Green open access
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Fuin, N; Pedemonte, S; Arridge, S; Ourselin, S; Hutton, BF; (2014) Efficient Determination of the Uncertainty for the Optimization of SPECT System Design: A Subsampled Fisher Information Matrix. IEEE Trans Med Imaging , 33 (3) 618 - 635. 10.1109/TMI.2013.2292805. Green open access
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Grigorian, G; George, SV; Lishak, S; Shipley, RJ; Arridge, S; (2024) A hybrid neural ordinary differential equation model of the cardiovascular system. Journal of the Royal Society Interface , 21 (212) , Article 20230710. 10.1098/rsif.2023.0710. Green open access
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Grigorian, Gevik; George, Sandip; Arridge, Simon; (2025) Learning governing equations of unobserved states in dynamical systems. Physica D: Nonlinear Phenomena , 472 , Article 134499. 10.1016/j.physd.2024.134499. Green open access
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Hänninen, N; Pulkkinen, A; Arridge, S; Tarvainen, T; (2022) Adaptive stochastic Gauss-Newton method with optical Monte Carlo for quantitative photoacoustic tomography. Journal of Biomedical Optics , 27 (8) , Article 083013. 10.1117/1.JBO.27.8.083013. Green open access
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Hauptmann, Andreas; Arridge, Simon; Lucka, Felix; Muthurangu, Vivek; Steeden, Jennifer A; (2019) Real-time Cardiovascular MR with Spatio-temporal De-aliasing using Deep Learning - Proof of Concept in Congenital Heart Disease. Magnetic Resonance in Medicine , 81 (2) pp. 1143-1156. 10.1002/mrm.27480. Green open access
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Hauptmann, A; Adler, J; Arridge, SR; Öktem, O; (2020) Multi-Scale Learned Iterative Reconstruction. IEEE Transactions on Computational Imaging , 6 pp. 843-856. 10.1109/TCI.2020.2990299. Green open access
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Hauptmann, A; Lucka, F; Betcke, M; Huynh, N; Adler, J; Cox, B; Beard, P; ... Arridge, S; + view all (2018) Model based learning for accelerated, limited-view 3D photoacoustic tomography. IEEE Transactions on Medical Imaging , 37 (6) pp. 1382-1393. 10.1109/TMI.2018.2820382. Green open access
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Hochuli, R; Powell, S; Arridge, S; Cox, B; (2016) Quantitative photoacoustic tomography using forward and adjoint Monte Carlo models of radiance. Journal of Biomedical Optics , 21 (12) , Article 126004. 10.1117/1.JBO.21.12.126004. Green open access
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Hutton, BF; Thomas, BA; Erlandsson, K; Bousse, A; Reilhac-Laborde, A; Kazantsev, D; Pedemonte, S; ... Ourselin, S; + view all (2013) What approach to brain partial volume correction is best for PET/MRI? Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment , 702 29 - 33. 10.1016/j.nima.2012.07.059. Green open access
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Huynh, N; Lucka, F; Zhang, E; Betcke, M; Arridge, SR; Beard, PC; Cox, BT; (2019) Single-pixel camera photoacoustic tomography. Journal of Biomedical Optics , 24 (12) pp. 1-6. 10.1117/1.JBO.24.12.121907. Green open access
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Jaubert, O; Steeden, J; Montalt-Tordera, J; Arridge, S; Kowalik, GT; Muthurangu, V; (2021) Deep artifact suppression for spiral real-time phase contrast cardiac magnetic resonance imaging in congenital heart disease. Magnetic Resonance Imaging , 83 pp. 125-132. 10.1016/j.mri.2021.08.005. Green open access
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Jaubert, Olivier; Montalt-Tordera, Javier; Brown, James; Knight, Daniel; Arridge, Simon; Steeden, Jennifer; Muthurangu, Vivek; (2022) FReSCO: Flow Reconstruction and Segmentation for low-latency Cardiac Output monitoring using deep artifact suppression and segmentation. Magnetic Resonance in Medicine 10.1002/mrm.29374. (In press). Green open access
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Jaubert, Olivier; Pascale, Michele; Montalt-Tordera, Javier; Akesson, Julius; Virsinskaite, Ruta; Knight, Daniel; Arridge, Simon; ... Muthurangu, Vivek; + view all (2024) Training deep learning based dynamic MR image reconstruction using open-source natural videos. Scientific Reports , 14 (1) , Article 11774. 10.1038/s41598-024-62294-7. Green open access
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Jaubert, O; Montalt-Tordera, J; Knight, D; Coghlan, GJ; Arridge, S; Steeden, JA; Muthurangu, V; (2021) Real-time deep artifact suppression using recurrent U-Nets for low-latency cardiac MRI. Magnetic Resonance in Medicine 10.1002/mrm.28834. (In press). Green open access
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Jha, AK; Zhu, Y; Arridge, S; Wong, DF; Rahmim, A; (2018) Incorporating reflection boundary conditions in the Neumann series radiative transport equation: application to photon propagation and reconstruction in diffuse optical imaging. Biomedical Optics Express , 9 (4) pp. 1389-1407. 10.1364/BOE.9.001389. Green open access
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Jiao, J; Boss, A; Thielemans, K; Burgos, N; Weston, P; Markiewicz, P; Schott, J; ... Ourselin, S; + view all (2016) Direct parametric reconstruction with joint motion estimation/correction for dynamic brain PET data. IEEE Transactions on Medical Imaging , 36 (1) 10.1109/TMI.2016.2594150. Green open access
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Jiao, J; Markiewicz, Pawel; Burgos, N; Atkinson, D; Hutton, B; Arridge, S; Ourselin, S; (2015) Detail-Preserving PET Reconstruction with Sparse Image Representation and Anatomical Priors. Information Processing in Medical Imaging , 24 pp. 540-551. Green open access
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Jin, B; Arridge, S; Zhang, C; (2019) Expectation propagation for Poisson data. Inverse Problems , 35 (8) , Article 085006. 10.1088/1361-6420/ab15a3. Green open access
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Jones, G; Clancy, N; Helo, Y; Arridge, S; Elson, D; Stoyanov, D; (2017) Bayesian Estimation of Intrinsic Tissue Oxygenation and Perfusion from RGB Images. IEEE Transactions on Medical Imaging 10.1109/TMI.2017.2665627. (In press). Green open access
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Kakkar, LS; Usman, M; Arridge, S; Kirkham, A; Atkinson, D; (2020) Characterization of B₀-field fluctuations in prostate MRI. Physics in Medicine & Biology 10.1088/1361-6560/abbc7f. (In press). Green open access
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Kaupinmäki, Santeri; Cox, Ben; Arridge, Simon; (2023) Phase-insensitive versus phase-sensitive ultrasound absorption tomography in the frequency domain. Applied Mathematics in Science and Engineering , 31 (1) , Article 2252571. 10.1080/27690911.2023.2252571. Green open access
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Kaupinmäki, S; Cox, B; Arridge, SR; Baker, C; Sinden, D; Zeqiri, B; (2020) Pyroelectric ultrasound sensor model: directional response. Measurement Science and Technology 10.1088/1361-6501/abc866. (In press). Green open access
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Kereta, Z; Twyman, R; Arridge, SR; Thielemans, K; Jin, B; (2021) Stochastic EM methods with variance reduction for penalised PET reconstructions. Inverse Problems , 37 (11) , Article 115006. 10.1088/1361-6420/ac2d74. Green open access
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Khalil, Lucinda; George, Sandip V; Brown, Katherine L; Ray, Samiran; Arridge, Simon; (2025) Transitions in intensive care: Investigating critical slowing down post extubation. PLOS ONE , 20 (1) , Article e0317211. 10.1371/journal.pone.0317211. Green open access
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Kolehmainen, V; Ehrhardt, MJ; Arridge, SR; (2019) Incorporating structural prior information and sparsity into EIT using parallel level sets. Inverse Problems and Imaging , 13 (2) pp. 285-307. 10.3934/ipi.2019015. Green open access
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Kumar, S; Lockwood, N; Ramel, MC; Correia, T; Ellis, M; Alexandrov, Y; Andrews, N; ... French, P; + view all (2016) Quantitative in vivo optical tomography of cancer progression & vasculature development in adult zebrafish. Oncotarget , 7 (28) pp. 43939-43948. 10.18632/oncotarget.9756. Green open access
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Lehtikangas, O; Tarvainen, T; Kim, AD; Arridge, SR; (2015) Finite element approximation of the radiative transport equation in a medium with piece-wise constant refractive index. Journal of Computational Physics , 282 pp. 345-359. 10.1016/j.jcp.2014.11.025. Green open access
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Lila, E; Arridge, S; Aston, JAD; (2020) Representation and reconstruction of covariance operators in linear inverse problems. Inverse Problems 10.1088/1361-6420/ab8713. (In press). Green open access
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Lillington, J; Brusaferri, L; Kläser, K; Shmueli, K; Neji, R; Hutton, BF; Fraioli, F; ... Atkinson, D; + view all (2020) PET/MRI Attenuation Estimation in the Lung: A Review of Past, Present, and Potential Techniques. Medical Physics , 47 (2) pp. 790-811. 10.1002/mp.13943. Green open access
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Lishak, Sam; Grigorian, Gevik; George, Sandip V; Ovenden, Nicholas C; Shipley, Rebecca J; Arridge, Simon; (2023) A variable heart rate multi-compartmental coupled model of the cardiovascular and respiratory systems. Journal of the Royal Society Interface , 20 (207) , Article 20230339. 10.1098/rsif.2023.0339. Green open access
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Lucka, F; Nam, H; Betcke, M; Zhang, E; Beards, P; Cox, B; Arridge, S; (2018) Enhancing Compressed Sensing 4D Photoacoustic Tomography by Simultaneous Motion Estimation. SIAM Journal on Imaging Sciences , 11 (4) pp. 2224-2253. 10.1137/18M1170066. Green open access
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Lunz, S; Hauptmann, A; Tarvainen, T; Schönlieb, C-B; Arridge, S; (2021) On Learned Operator Correction in Inverse Problems. SIAM Journal on Imaging Sciences , 14 (1) pp. 92-127. 10.1137/20m1338460. Green open access
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Macdonald, C; Arridge, S; Powell, S; (2020) Efficient inversion strategies for estimating optical properties with Monte Carlo radiative transport models. Journal of Biomedical Optics , 25 (8) , Article 085002. 10.1117/1.JBO.25.8.085002. Green open access
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Maffeis, G; Di Sieno, L; Dalla Mora, A; Pifferi, A; Tosi, A; Conca, E; Giudice, A; ... Taroni, P; + view all (2024) The SOLUS instrument: Optical characterization of the first hand-held probe for multimodal imaging (ultrasound and multi-wavelength time-resolved diffuse optical tomography). Optics and Lasers in Engineering , 176 , Article 108075. 10.1016/j.optlaseng.2024.108075. (In press). Green open access
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Malone, E; Dos Santos, GS; Holder, D; Arridge, S; (2015) A Reconstruction-Classification Method for Multifrequency Electrical Impedance Tomography. IEEE Transactions on Medical Imaging , 34 (7) pp. 1486-1497. Green open access
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Malone, E; Jehl, M; Arridge, S; Betcke, T; Holder, D; (2014) Stroke type differentiation using spectrally constrained multifrequency EIT: evaluation of feasibility in a realistic head model. Physiological Measurement , 35 (6) 1051 - 1066. 10.1088/0967-3334/35/6/1051. Green open access
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Malone, E; Powell, S; Cox, BT; Arridge, S; (2015) Reconstruction-classification method for quantitative photoacoustic tomography. Journal of Biomedical Optics , 20 (12) , Article 126004. 10.1117/1.JBO.20.12.126004. Green open access
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Malone, E; Sato Dos Santos, G; Holder, D; Arridge, S; (2014) Multifrequency electrical impedance tomography using spectral constraints. IEEE Trans Med Imaging , 33 (2) 340 - 350. 10.1109/TMI.2013.2284966. Green open access
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Manber, R; Thielemans, K; Hutton, BF; Wan, S; Fraioli, F; Barnes, A; Ourselin, S; ... Atkinson, D; + view all (2018) Clinical Impact of Respiratory Motion Correction in Simultaneous PET/MR with a Joint PET/MR Predictive Motion Model. The Journal of Nuclear Medicine , 59 (9) pp. 1467-1473. 10.2967/jnumed.117.191460. Green open access
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Manber, R; Thielemans, K; Hutton, BF; Wan, S; McClelland, J; Barnes, A; Arridge, S; ... Atkinson, D; + view all (2016) Joint PET-MR respiratory motion models for clinical PET motion correction. Physics in Medicine and Biology , 61 (17) pp. 6515-6530. 10.1088/0031-9155/61/17/6515. Green open access
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Maneas, E; Hauptmann, A; Alles, EJ; Xia, W; Vercauteren, T; Ourselin, S; David, AL; ... Desjardins, AE; + view all (2021) Deep Learning for Instrumented Ultrasonic Tracking: From synthetic training data to in vivo application. IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control 10.1109/tuffc.2021.3126530. (In press). Green open access
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Markiewicz, PJ; Ehrhardt, MJ; Atkinson, D; Arridge, SR; Hutton, BF; Ourselin, S; (2016) Uniform acquisition modelling across PET imaging systems: unified scatter modelling. (In press). Green open access
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Markiewicz, PJ; Ehrhardt, MJ; Erlandsson, K; Noonan, PJ; Barnes, A; Schott, JM; Atkinson, D; ... Ourselin, S; + view all (2017) NiftyPET: A high-throughput software platform for high quantitative accuracy and precision PET imaging and analysis. Neuroinformatics 10.1007/s12021-017-9352-y. (In press). Green open access
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Markiewicz, PJ; Thielemans, K; Schott, JM; Atkinson, D; Arridge, S; Hutton, B; Ourselin, S; (2016) Rapid processing of PET list-mode data for efficient uncertainty estimation and data analysis. Physics in Medicine and Biology , 61 (13) N322-N336. 10.1088/0031-9155/61/13/N322. Green open access
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McClelland, JR; Modat, M; Arridge, S; Grimes, H; D'Souza, D; Thomas, D; O'Connell, D; ... Hawkes, D; + view all (2017) A generalized framework unifying image registration and respiratory motion models and incorporating image reconstruction, for partial image data or full images. Physics in Medicine and Biology , 62 (11) , Article 4273. 10.1088/1361-6560/aa6070. Green open access
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Mozumder, M; Hauptmann, A; Nissilä, I; Arridge, SR; Tarvainen, T; (2021) A model-based iterative learning approach for diffuse optical tomography. IEEE Transactions on Medical Imaging 10.1109/TMI.2021.3136461. (In press). Green open access
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Mozumder, M; Tarvainen, T; Seppanen, A; Nissila, I; Arridge, SR; Kolehmainen, V; (2015) Nonlinear approach to difference imaging in diffuse optical tomography. Journal of Biomedical Optics , 20 (10) , Article 105001. 10.1117/1.JBO.20.10.105001. Green open access
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Pan, B; Arridge, SR; Lucka, F; Cox, BT; Huynh, N; Beard, PC; Zhang, EZ; (2021) Photoacoustic Reconstruction Using Sparsity in Curvelet Frame: Image Versus Data Domain. IEEE Transactions on Computational Imaging , 7 pp. 879-893. 10.1109/TCI.2021.3103606. Green open access
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Papadimitriou, K; Dempsey, LA; Hebden, JC; Arridge, SR; Powell, S; (2018) A spread spectrum approach to time-domain near-infrared diffuse optical imaging using inexpensive optical transceiver modules. Biomedical Optics Express , 9 (6) pp. 2648-2663. 10.1364/BOE.9.002648. Green open access
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Papadimitriou, K; Rosas, EEV; Zhang, E; Cooper, RJ; Hebden, JC; Arridge, SR; Powell, S; (2020) Dual wavelength spread-spectrum time-resolved diffuse optical instrument for the measurement of human brain functional responses. Biomedical Optics Express , 11 (7) pp. 3477-3490. 10.1364/BOE.393586. Green open access
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Powell, S; Arridge, SR; Leung, TS; (2016) Gradient-based quantitative image reconstruction in ultrasound-modulated optical tomography: first harmonic measurement type in a linearised diffusion formulation. IEEE Transactions on Medical Imaging , 35 (2) pp. 456-467. 10.1109/TMI.2015.2478742. Green open access
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Powell, S; Cox, BT; Arridge, SR; (2019) A pseudospectral method for solution of the radiative transport equation. Journal of Computational Physics , 384 pp. 376-382. 10.1016/j.jcp.2019.01.024. Green open access
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Pulkkinen, A; Cox, BT; Arridge, SR; Goh, H; Kaipio, JP; Tarvainen, T; (2016) Direct Estimation of Optical Parameters From Photoacoustic Time Series in Quantitative Photoacoustic Tomography. Transactions on Medical Imaging , 35 (11) pp. 2497-2508. 10.1109/TMI.2016.2581211. Green open access
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Pulkkinen, A; Cox, BT; Arridge, SR; Kaipio, JP; Tarvainen, T; (2015) Quantitative photoacoustic tomography using illuminations from a single direction. Journal of Biomedical Optics , 20 (3) , Article 036015. 10.1117/1.JBO.20.3.036015. Green open access
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Sari, H; Erlandsson, K; Law, I; Larsson, HB; Ourselin, S; Arridge, S; Atkinson, D; (2017) Estimation of an image derived input function with MR-defined carotid arteries in FDG-PET human studies using a novel partial volume correction method. Journal of Cerebral Blood Flow & Metabolism , 37 (4) pp. 1398-1409. 10.1177/0271678X16656197. Green open access
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Sari, H; Erlandsson, K; Marner, L; Law, I; Larsson, HBW; Thielemans, K; Ourselin, S; ... Hutton, BF; + view all (2018) Non-invasive kinetic modelling of PET tracers with radiometabolites using a constrained simultaneous estimation method: evaluation with 11C-SB201745. EJNMMI Res , 8 (1) , Article 58. 10.1186/s13550-018-0412-6. Green open access
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Sari, H; Erlandsson, K; Thielemans, K; Atkinson, D; Arridge, S; Ourselin, S; Hutton, B; (2014) Incorporation of MRI-AIF information for improved kinetic modelling of dynamic PET data. EJNMMI Phys , 1 (S1) , Article A43. 10.1186/2197-7364-1-S1-A43. Green open access
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Sari, H; Erlandsson, K; Thielemans, K; Atkinson, D; Ourselin, S; Arridge, S; Hutton, BF; (2015) Incorporation of MRI-AIF information for improved kinetic modeling of dynamic PET data. IEEE Transactions on Nuclear Science , 62 (3) pp. 612-618. 10.1109/TNS.2015.2426952. Green open access
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Schweiger, M; Arridge, S; (2017) Basis mapping methods for forward and inverse problems. International Journal for Numerical Methods in Engineering , 109 (1) pp. 3-28. 10.1002/nme.5271. Green open access
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Schweiger, M; Arridge, S; (2014) The Toast plus plus software suite for forward and inverse modeling in optical tomography. Journal of Biomedical Optics , 19 (4) , Article 040801. 10.1117/1.JBO.19.4.040801. Green open access
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Schweiger, M; Zhukov, L; Arridge, SR; Johnson, CR; (1999) Optical tomography using the SCIRun problem solving environment: Preliminary results for three-dimensional geometries and parallel processing. Optics express , 4 (8) 263 - 269. 10.1364/OE.4.000263. Green open access
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Singh, Imraj RD; Denker, Alexander; Barbano, Riccardo; Kereta, Željko; Jin, Bangti; Thielemans, Kris; Maass, Peter; (2024) Score-Based Generative Models for PET Image Reconstruction. Machine Learning for Biomedical Imaging , 2 pp. 547-585. 10.59275/j.melba.2024-5d51. Green open access
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Smigaj, W; Arridge, S; Betcke, T; Phillips, J; Schweiger, M; (2015) Solving Boundary Integral Problems with BEM++. ACM Transactions on Mathematical Software , 41 (2) , Article 6. 10.1145/2590830. Green open access
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Stanziola, A; Arridge, SR; Cox, BT; Treeby, BE; (2023) j-Wave: An open-source differentiable wave simulator. SoftwareX , 22 , Article 101338. 10.1016/j.softx.2023.101338. Green open access
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Stanziola, A; Arridge, SR; Cox, BT; Treeby, BE; (2021) A Helmholtz equation solver using unsupervised learning: Application to transcranial ultrasound. Journal of Computational Physics , 441 , Article 110430. 10.1016/j.jcp.2021.110430. Green open access
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Stanziola, Antonio; Arridge, Simon; Cox, Ben T; Treeby, Bradley E; (2023) A learned Born series for highly-scattering media. JASA Express Letters , 3 (5) , Article 052401. 10.1121/10.0017937. Green open access
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Steeden, JA; Quail, M; Gotschy, A; Mortensen, KH; Hauptmann, A; Arridge, S; Jones, R; (2020) Rapid whole-heart CMR with single volume super-resolution. Journal of Cardiovascular Magnetic Resonance , 22 (1) , Article 56. 10.1186/s12968-020-00651-x. Green open access
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Tick, J; Pulkkinen, A; Lucka, F; Ellwood, R; Cox, BT; Kaipio, JP; Arridge, SR; (2018) Three dimensional photoacoustic tomography in Bayesian framework. The Journal of the Acoustical Society of America , 144 (4) pp. 2061-2071. 10.1121/1.5057109. Green open access
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Tsai, Y-J; Bousse, A; Arridge, S; Stearns, CW; Hutton, BF; Thielemans, K; (2021) Penalized PET/CT Reconstruction Algorithms With Automatic Realignment for Anatomical Priors. IEEE Transactions on Radiation and Plasma Medical Sciences , 5 (3) pp. 362-372. 10.1109/trpms.2020.3025540. Green open access
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Tsai, Y-J; Schramm, G; Ahn, S; Bousse, A; Arridge, S; Nuyts, J; Hutton, BF; ... Thielemans, K; + view all (2019) Benefits of Using a Spatially-variant Penalty Strength with Anatomical Priors in PET Reconstruction. IEEE Transactions on Medical Imaging 10.1109/TMI.2019.2913889. (In press). Green open access
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Tsai, YJ; Bousse, A; Ehrhardt, MJ; Stearns, CW; Ahn, S; Hutton, B; Arridge, S; (2017) Fast Quasi-Newton Algorithms for Penalized Reconstruction in Emission Tomography and Further Improvements via Preconditioning. IEEE Transactions on Medical Imaging , 37 (4) pp. 1000-1010. 10.1109/TMI.2017.2786865. Green open access
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Usman, M; Kakkar, L; Matakos, A; KIRKHAM, A; Arridge, S; Atkinson, D; (2020) Joint B0 and image estimation integrated with model based reconstruction for field map update and distortion correction in prostate diffusion MRI. Magnetic Resonance Imaging , 65 pp. 90-99. 10.1016/j.mri.2019.09.008. Green open access
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Usman, M; Kakkar, LS; Kirkham, APS; Arridge, SR; Atkinson, D; (2019) Model‐based reconstruction framework for correction of signal pile‐up and geometric distortions in prostate diffusion MRI. Magnetic Resonance in Medicine , 81 (3) pp. 1973-1992. 10.1002/mrm.27547. Green open access
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van 't Wout, E; Gélat, P; Betcke, T; Arridge, S; (2015) A fast boundary element method for the scattering analysis of high-intensity focused ultrasound. Journal of the Acoustical Society of America , 138 (5) pp. 2726-2737. 10.1121/1.4932166. Green open access
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Yang, G; Yu, S; Dong, H; Slabaugh, G; Dragotti, PL; Ye, X; Liu, F; ... Firmin, D; + view all (2017) DAGAN: Deep De-Aliasing Generative Adversarial Networks for Fast Compressed Sensing MRI Reconstruction. IEEE Transactions on Medical Imaging 10.1109/TMI.2017.2785879. (In press). Green open access
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Zacharopoulos, A; Schweiger, M; Kolehmainen, V; Arridge, S; (2009) 3D shape based reconstruction of experimental data in Diffuse Optical Tomography. Optics express , 17 (21) 18940 - 18956. 10.1364/OE.17.018940. Green open access
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Zacharopoulos, AD; Svenmarker, P; Axelsson, J; Schweiger, M; Arridge, SR; Andersson-Engels, S; (2009) A matrix-free algorithm for multiple wavelength fluorescence tomography. Optics express , 17 (5) 3025 - 3035. 10.1364/OE.17.003025. Green open access
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Book chapter

Jin, B; Barbano, R; Arridge, S; Tanno, R; (2022) Uncertainty quantification in medical image synthesis. In: Burgos, N and Svoboda, D, (eds.) Biomedical Image Synthesis Simulation: Methods and Applications. Elsevier: Amsterdam, Netherlands. Green open access
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Proceedings paper

(2018) Spatially-variant Strength for Anatomical Priors in PET Reconstruction. In: Proceedings of the 2017 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC). IEEE: New York, USA. Green open access
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Abascal, J; Ducros, N; Pronina, V; Bussod, S; Hauptmannz, A; Arridge, S; Douek, P; (2020) Material Decomposition Problem in Spectral CT: A Transfer Deep Learning Approach. In: Proceedings of the 2020 IEEE 17th International Symposium on Biomedical Imaging Workshops (ISBI Workshops). IEEE: Iowa City, IA, USA. Green open access
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Barbano, R; Zhang, C; Arridge, SR; Jin, B; (2020) Quantifying Model Uncertainty in Inverse Problems via Bayesian Deep Gradient Descent. In: Proceedings of the 25th International Conference on Pattern Recognition (ICPR). (pp. pp. 1392-1399). IEEE: Milan, Italy. Green open access
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Barbano, R; Kereta, Z; Zhang, C; Hauptmann, A; Arridge, SR; Jin, B; (2020) Quantifying Sources of Uncertainty in Deep Learning-Based Image Reconstruction. In: Proceedings of the NeurIPS 2020 Workshop on Deep Learning and Inverse Problems. (pp. pp. 1-13). NeurIPS Green open access
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Bertolli, O; Arridge, S; Stearns, CW; Wollenweber, SD; Hutton, BF; Thielemans, K; (2017) Improvement of the Sign Determination Method for Data-Driven respiratory signal in TOF-PET. In: 2017 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2017 - Conference Proceedings. IEEE Green open access
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Bertolli, O; Arridge, S; Stearns, CW; Wollenweber, SD; Hutton, BF; Thielemans, K; (2016) Sign determination methods for the respiratory signal in data-driven PET gating. In: 2015 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC). (pp. pp. 1411-1413). Institute of Electrical and Electronics Engineers (IEEE) Green open access
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Bertolli, O; Arridge, S; Stearns, CW; Wollenweher, SD; Hutton, BF; Thielemans, K; (2017) Data Driven Respiratory Signal Detection in PET Taking Advantage of Time-of-Flight Data. In: Proceedings of the 2016 IEEE Nuclear Science Symposium, Medical Imaging Conference and Room-Temperature Semiconductor Detector Workshop (NSS/MIC/RTSD). IEEE: Strasbourg, France. Green open access
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Bertolli, O; Cuplov, V; Arridge, S; Stearns, CW; Wollenweber, SD; Hutton, BF; Thielemans, K; (2017) Detection of Lung Density Variations With Principal Component Analysis in PET. In: 2017 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2017 - Conference Proceedings. IEEE Green open access
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Bewick, JAJ; Munro, PRT; Arridge, SR; Guggenheim, JA; (2023) Simulating optical memory effects and the scanning of foci using wavefront shaping in tissue-like scattering media. In: Proceedings Volume 12632, Optical Coherence Imaging Techniques and Imaging in Scattering Media V; 126321H (2023). SPIE: Munich, Germany. Green open access
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Bewick, JAJ; Munro, PRT; Arridge, SR; Guggenheim, JA; (2023) A computational framework for investigating the feasibility of focusing light in biological tissue via photoacoustic wavefront shaping. In: Photons Plus Ultrasound: Imaging and Sensing 2023. SPIE: San Francisco, CA, US. Green open access
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Brusaferri, L; Bousse, A; Efthimiou, N; Emond, E; Atkinson, D; Ourselin, S; Hutton, BF; ... Thielemans, K; + view all (2018) Potential benefits of incorporating energy information when estimating attenuation from PET data. In: 2017 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC). IEEE Xplore: New York, NY, USA. Green open access
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Brusaferri, L; Bousse, A; Tsai, YJ; Atkinson, D; Ourselin, S; Hutton, BF; Arridge, S; (2019) Maximum-likelihood estimation of emission and attenuation images in 3D PET from multiple energy window measurements. In: Rozenfeld, A and Engels, R, (eds.) Proceedings of the 2018 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC). IEEE Xplore: New York, NY, USA. Green open access
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Brusaferri, L; Emond, EC; Atkinson, D; Ourselin, S; Hutton, BF; Arridge, S; Thielemans, K; (2020) Joint reconstruction of activity and attenuation in non-TOF PET using a synergistic prior to enforce structural similarities. In: Proceedings of the 2019 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC). IEEE: Manchester, UK. Green open access
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Burgos, N; Cardoso, MJ; Guerreiro, F; Veiga, C; Modat, M; McClelland, J; Knopf, A-C; ... Ourselin, S; + view all (2015) Robust CT Synthesis for Radiotherapy Planning: Application to the Head and Neck Region. In: Navab, N and Hornegger, J and Wells, WM and Frangi, AF, (eds.) Proceedings of the 18th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI). (pp. pp. 476-484). Springer, Mach: Munich, Germany. Green open access
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Burgos, N; Cardoso, MJ; Mendelson, AF; Schott, JM; Atkinson, D; Arridge, SR; Hutton, BF; (2015) Subject-specific Models for the Analysis of Pathological FDG PET Data. In: Navab, N and Hornegger, J and Wells, WM and Frangi, AF, (eds.) Proceedings of the 18th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI). (pp. pp. 651-658). Springer, Cham: Munich, Germany. Green open access
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Burgos, N; Thielemans, K; Cardoso, MJ; Markiewicz, P; Jiao, J; Dickson, J; Duncan, JS; ... Ourselin, S; + view all (2014) Effect of scatter correction when comparing attenuation maps: Application to brain PET/MR. In: Proceedings of the 2014 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC). IEEE: Seattle, WA, USA. Green open access
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Bussod, S; Abascal, JFPJ; Arridge, SR; Hauptmann, A; Chappard, C; Ducros, N; Peyrin, F; (2020) Convolutional Neural Network for Material Decomposition in Spectral CT Scans. In: 2020 28th European Signal Processing Conference (EUSIPCO). (pp. pp. 1259-1263). IEEE: Amsterdam, Netherlands. Green open access
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Calvert, N; Helo, Y; Mertzanidou, T; Tuch, DS; Arridge, S; Stoyanov, D; (2017) A Simulation Study of Spectral Cerenkov Luminescence Imaging for Tumour Margin Estimation. In: Krol, A and Gimi, B, (eds.) Medical Imaging 2017: Biomedical Applications in Molecular, Structural, and Functional Imaging. Society of Photo-Optical Instrumentation Engineers (SPIE): Orlando, FL, USA. Green open access
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Denker, A; Hertrich, J; Kereta, Z; Cipiccia, S; Erin, E; Arridge, S; (2025) Plug-and-Play Half-Quadratic Splitting for Ptychography. In: Bubba, TA and Gaburro, R and Gazzola, S and Papafitsoros, K and Pereyra, M and Schönlieb, CB, (eds.) Scale Space and Variational Methods in Computer Vision. SSVM 2025. (pp. pp. 269-281). Springer Nature: Cham, Switzerland.

Di Sciacca, G; Ferocino, E; Farina, A; Pifferi, A; Taroni, P; Arridge, S; (2019) Fitting a spectral model for component analysis in diffuse optical tomography. In: Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE Green open access
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Farina, A; Betcke, M; Bassi, A; Valentini, G; Arridge, S; D'Andrea, C; (2019) An adaptive scheme for diffuse-optical tomography based on combined structured-light illumination and single-pixel camera detection. In: Dehghani, H and Wabnitz, H, (eds.) Diffuse Optical Spectroscopy and Imaging VII. SPIE: Munich, Germany. Green open access
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Farina, A; Betcke, M; Bassi, A; Valentini, G; Arridge, S; D'Andrea, C; (2018) Time-resolved diffuse optical tomography system based on adaptive structured light illumination and compressive sensing detection. In: Fournier, C and Georges, MP and Popescu, G, (eds.) Unconventional Optical Imaging. (pp. 106770D). Society of Photo-Optical Instrumentation Engineers (SPIE) Green open access
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Farina, A; Betcke, M; Di Sieno, L; Bassi, A; Ducros, N; Pifferi, A; Valentini, G; ... D 'Andrea, C; + view all (2017) Diffuse Optical Tomography based on time-resolved compressive sensing. In: Tromberg, BJ and Yodh, AG and SevickMuraca, EM and Alfano, RR, (eds.) Proceedings of SPIE Volume 10059. (pp. 100590I-1-100590I-6). SPIE Green open access
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Farina, A; Betcke, M; Ducros, N; di Sieno, L; Bassi, A; Pifferi, A; Valentini, G; ... D'Andrea, C; + view all (2017) Multiple-view time-resolved diffuse optical tomography based on structured illumination and compressive detection. In: Dehghani, H and Wabnitz, H, (eds.) Diffuse Optical Spectroscopy and Imaging VI. (pp. 1041203:1-1041203:3). Society of Photo-Optical Instrumentation Engineers (SPIE) Green open access
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Ferocino, E; Di Sciacca, G; Di Sieno, L; Dalla Mora, A; Pifferi, A; Arridge, S; Martelli, F; ... Farina, A; + view all (2019) Multi-wavelength time domain diffuse optical tomography for breast cancer: Initial results on silicone phantoms. In: Optical Tomography and Spectroscopy of Tissue XIII. SPIE BIOS: San Francisco, CA, United States. Green open access
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Hänninen, N; Pulkkinen, A; Arridge, S; Tarvainen, T; (2023) Image reconstruction in quantitative photoacoustic tomography using adaptive optical Monte Carlo. In: Photons Plus Ultrasound: Imaging and Sensing. SPIE: San Francisco, CA, US. Green open access
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Hauptmann, A; Cox, B; Lucka, F; Huynh, N; Betcke, M; Beard, P; Arridge, S; (2018) Approximate k-space models and deep learning for fast photoacoustic reconstruction. In: MLMIR 2018: Machine Learning for Medical Image Reconstruction. (pp. pp. 103-111). Springer: Cham, Switzerland. Green open access
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Hochuli, R; Powell, S; Arridge, S; Cox, B; (2015) Forward and Adjoint Radiance Monte Carlo Models for Quantitative Photoacoustic Imaging. In: Photons Plus Ultrasound: Imaging and Sensing 2015. SPIE Green open access
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Huynh, N; Lucka, F; Zhang, E; Betcke, M; Arridge, S; Beard, P; Cox, B; (2017) Sub-sampled Fabry-Perot photoacoustic scanner for fast 3D imaging. In: Oraevsky, AA and Wang, LV, (eds.) Photons Plus Ultrasound: Imaging and Sensing 2017: Proceedings. (pp. 100641Y-1-100641Y-5). Society of Photo-Optical Instrumentation Engineers (SPIE) Green open access
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Huynh, N; Zhang, E; Betcke, M; Arridge, S; Beard, P; Cox, B; (2015) A real-time ultrasonic field mapping system using a Fabry Perot single pixel camera for 3D photoacoustic imaging. In: Oraevsky, AA and Wang, LV, (eds.) Proc. SPIE 9323, Photons Plus Ultrasound: Imaging and Sensing 2015. SPIE Green open access
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Jones, G; Clancy, NT; Arridge, S; Elson, DS; Stoyanov, D; (2016) Inference of tissue haemoglobin concentration from Stereo RGB. In: Zheng, G and Liao, H and Jannin, P and Cattin, P and Lee, SL, (eds.) Medical Imaging and Augmented Reality. MIAR 2016. (pp. pp. 50-58). Springer: Cham. Green open access
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Jones, G; Clancy, NT; Du, X; Robu, M; Arridge, S; Elson, DS; Stoyanov, D; (2017) Fast estimation of haemoglobin concentration in tissue via wavelet decomposition. In: Descoteaux, M and Maier-Hein, L and Franz, A and Jannin, P and Collins, D and Duchesne, S, (eds.) Medical Image Computing and Computer-Assisted Intervention − MICCAI 2017. (pp. pp. 100-108). Springer: Cham, Switzerland. Green open access
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Macdonald, CM; Arridge, SR; Munro, PRT; (2019) Solving the inverse problem in OCT using full-wave adjoint models. In: 2019 IEEE Photonics Conference (IPC). IEEE: San Antonio, TX, USA. Green open access
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Maffeis, G; Pifferi, A; Dalla Mora, A; Di Sieno, L; Cubeddu, R; Tosi, A; Conca, E; ... Taroni, P; + view all (2023) SOLUS: A Smart OpticaL and UltraSound device for the diagnostics of breast cancer. In: Il Nuovo Cimento C - Colloquia on Physics. Società Italiana di Fisica: Bologna, Italy. Green open access
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Maffeis, G; Pifferi, A; Dalla Mora, A; Di Sieno, L; Cubeddu, R; Tosi, A; Conca, E; ... Taroni, P; + view all (2023) Initial examples of the SOLUS multimodal potential. In: Contini, Davide and Hoshi, Yoko and O'Sullivan, Thomas D, (eds.) Proceedings Volume 12628, Diffuse Optical Spectroscopy and Imaging IX. (pp. p. 1262807). SPIE: Munich, Germany. Green open access
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Maffeis, G; Pifferi, A; Dalla Mora, A; Di Sieno, L; Cubeddu, R; Tosi, A; Conca, E; ... Taroni, Paola; + view all (2023) Breast lesion classification based on absorption and composition parameters: a look at SOLUS first outcomes. In: Fantini, Sergio and Taroni, Paola, (eds.) Optical Tomography and Spectroscopy of Tissue XV. SPIE BIOS: San Francisco, California, United States. Green open access
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Malone, E; Cox, B; Arridge, S; (2016) Multispectral reconstruction methods for quantitative photoacoustic tomography. In: Oraevsky, AA and Wang, LV, (eds.) Photons Plus Ultrasound: Imaging and Sensing 2016. SPIE: San Francisco, CA, USA. Green open access
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Mertzanidou, T; Calvert, N; Tuch, DS; Stoyanov, D; Arridge, SR; (2019) Tomosynthesis method for depth resolution of beta emitters. In: Proceedings of SPIE: Medical Imaging 2019: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE Green open access
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Papadimitriou, K; Hebden, J; Arridge, S; Powell, S; (2019) A dual-wavelength spread spectrum-based spectroscopic system For time-domain near-infrared diffuse optical imaging. In: Fantini, S and Tromberg, BJ and Sevick-Muraca, E and Taroni, P, (eds.) Proceedings of SPIE. Optical Tomography and Spectroscopy of Tissue XIII. SPIE: San Francisco (CA), USA. Green open access
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Pifferi, A; Dalla Mora, A; Di Sieno, L; Maffeis, G; Tosi, A; Conca, E; Sesta, V; ... Taroni, P; + view all (2021) SOLUS: a novel multimodal approach to ultrasound and diffuse optics imaging of breast cancer. In: Proceedings of SPIE, vol 11920, Diffuse Optical Spectroscopy and Imaging VIII, 1192003. (pp. p. 1192003). SPIE: Online. Green open access
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Pifferi, A; Dalla Mora, A; Di Sieno, L; Ferocino, E; Tosi, A; Conca, E; Sesta, V; ... Taroni, P; + view all (2021) SOLUS: An innovative multimodal imaging system to improve breast cancer diagnosis through diffuse optics and ultrasounds. In: Proceedings of Optical Tomography and Spectroscopy of Tissue XIV. (pp. 116390C). SPIE: Online Only. Green open access
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Porter, S; Deidda, D; Arridge, S; Thielemans, K; (2024) EFFECT of PRIOR SMOOTHING on the CONVERGENCE of PROXIMAL ALGORITHMS for PET and SPECT RECONSTRUCTION. In: Proceedings of the 2022 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC). IEEE: Italy. Green open access
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Powell, S; Hochuli, R; Arridge, S; (2017) Radiance Monte-Carlo for application of the radiative transport equation in the inverse problem of diffuse optical tomography. In: Proceedings of Optical Tomography and Spectroscopy of Tissue XII. SPIE Green open access
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Pulkkinen, A; Cox, BT; Arridge, SR; Kaipio, JP; Tarvainen, T; (2017) Estimation and uncertainty quantification of optical properties directly from the photoacoustic time series. In: Photons Plus Ultrasound: Imaging and Sensing 2017. (pp. 100643N-1). SPIE Green open access
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Pulkkinen, A; Cox, BT; Arridge, SR; Kaipio, JP; Tarvainen, T; (2016) Bayesian parameter estimation in spectral quantitative photoacoustic tomography. In: Oraevsky, AA and Wang, LV, (eds.) Photons Plus Ultrasound: Imaging and Sensing 2016. SPIE: San Francisco, CA, USA. Green open access
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Suhonen, M; Lucka, F; Pulkkinen, A; Arridge, S; Cox, B; Tarvainen, T; (2025) Joint reconstruction of multiple initial pressures and the speed of sound in photoacoustic tomography. In: Oraevsky, Alexander A and Wang, Lihong V, (eds.) Progress in Biomedical Optics and Imaging - Proceedings of SPIE. (pp. p. 118). SPIE: San Francisco, California, United States. Green open access
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Tarvainen, T; Pulkkinen, A; Cox, BT; Arridge, SR; (2017) Utilising the radiative transfer equation in quantitative photoacoustic tomography. In: Photons Plus Ultrasound: Imaging and Sensing 2017. (pp. 100643E-1-100643E-8). SPIE Green open access
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Tarvainen, T; Pulkkinen, A; Cox, BT; Kaipio, JP; Arridge, SR; (2016) Image reconstruction with noise and error modelling in quantitative photoacoustic tomography. In: Oraevsky, AA and Wang, LV, (eds.) Photons Plus Ultrasound: Imaging and Sensing 2016. SPIE: San Francisco, CA, USA. Green open access
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Thielemans, K; Arridge, S; (2016) Adaptive adjustment of the number of subsets during iterative image reconstruction. In: 2015 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC). IEEE Green open access
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Tick, J; Pulkkinen, A; Lucka, F; Ellwood, R; Cox, BT; Arridge, SR; Tarvainen, T; (2018) Photoacoustic image reconstruction in Bayesian framework. In: Oraevsky,, Alexander A. and Wang, Lihong V., (eds.) Proceedings Volume 10494, Photons Plus Ultrasound: Imaging and Sensing 2018; 1049450 (2018). SPIE: San Francisco, California, United States. Green open access
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Tremoulheac, B; Atkinson, D; Arridge, SR; (2012) Motion and contrast enhancement separation model reconstruction from partial measurements in dynamic MRI. In: Proceedings of the MICCAI Workshop on Sparsity Techniques in Medical Imaging. Green open access
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Tsai, YJ; Bousse, A; Ahn, S; Stearns, CW; Arridge, S; Hutton, BF; Thielemans, K; (2019) Algorithms for Solving Misalignment Issues in Penalized PET/CT Reconstruction Using Anatomical Priors. In: Proceedings of the 2018 IEEE Nuclear Science Symposium and Medical Imaging Conference Proceedings (NSS/MIC). IEEE: Sydney, Australia. Green open access
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Tsai, YJ; Bousse, A; Ehrhardt, MJ; Hutton, BF; Arridge, S; Thielemans, K; (2016) Performance evaluation of MAP algorithms with different penalties, object geometries and noise levels. In: 2015 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC). IEEE Green open access
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Tsai, YJ; Bousse, A; Stearns, CW; Ahn, S; Hutton, BF; Arridge, S; Thielemans, K; (2017) Performance improvement and validation of a new MAP reconstruction algorithm. In: 2016 IEEE Nuclear Science Symposium, Medical Imaging Conference and Room-Temperature Semiconductor Detector Workshop (NSS/MIC/RTSD 2016). (pp. pp. 290-292). IEEE Green open access
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Twyman, R; Brusaferri, L; Emond, EC; Leek, F; Arridge, S; Hutton, BF; Cuplov, V; (2021) A Demonstration of STIR-GATE-Connection. In: Proceedings of the IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC) 2021. (pp. pp. 1-2). Institute of Electrical and Electronics Engineers (IEEE) Green open access
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Twyman, R; Arridge, S; Hutton, BF; Emond, EC; Brusaferri, L; Ahn, S; Thielemans, K; (2020) Iterative PET Image Reconstruction using Adaptive Adjustment of Subset Size and Random Subset Sampling. In: Proceedings of the 2019 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC). IEEE: Manchester, UK. Green open access
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Usman, M; Kakkar, L; Shmueli, K; Arridge, S; Atkinson, D; (2018) An integrated model-based framework for the correction of signal pile-up and translational offsets in prostate diffusion MRI. In: Proceedings of the Joint Annual Meeting ISMRM-ESMRMB 2018. International Society for Magnetic Resonance in Medicine (ISMRM): Paris, France. Green open access
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Usman, M; Matakos, A; Kakkar, L; Arridge, S; Atkinson, D; (2019) Model based joint B0 and image estimation framework for dynamic field mapping and signal pile-up correction in prostate diffusion MRI. In: Proceedings of the ISMRM 27th Annual Meeting & Exhibition. International Society for Magnetic Resonance in Medicine (ISMRM): Montréal, Canada. Green open access
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Vyas, KN; Grootendorst, M; Mertzanidou, T; MacHoll, S; Stoyanov, D; Arridge, SR; Tuch, DS; (2018) Flexible scintillator autoradiography for tumor margin inspection using 18F-FDG. In: (Proceedings) SPIE BiOS, 2018 - Molecular-Guided Surgery: Molecules, Devices, and Applications IV. SPIE Green open access
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Yang, G; Hipwell, JH; Clarkson, MJ; Tanner, C; Mertzanidou, T; Gunn, S; Ourselin, S; ... Arridge, SR; + view all (2010) Combined Reconstruction and Registration of Digital Breast Tomosynthesis: Sequential Method versus Iterative Method. In: Bhalerao, AH and Rajpoot, NM, (eds.) Proceedings of Medical Image Understanding and Analysis 2010. (pp. P27-1-P27-5). Department of Computer Science, University of Warwick: Warwick, UK. Green open access
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Yang, G; Hipwell, JH; Clarkson, MJ; Tanner, C; Mertzanidou, T; Gunn, S; Ourselin, S; ... Arridge, SR; + view all (2010) Combined Reconstruction and Registration of Digital Breast Tomosynthesis. In: Marti, J and Oliver, A and Freixenet, J and Marti, R, (eds.) Proceedings of the International Workshop on Digital Mammography: 10th International Workshop, IWDM 2010, Girona, Catalonia, Spain, June 16-18, 2010. (pp. 760 - 768). Springer: Germany: Berlin. Green open access
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Yang, G; Hipwell, JH; Hawkes, DJ; Arridge, SR; (2012) A Nonlinear Least Squares Method for Solving the Joint Reconstruction and Registration Problem in Digital Breast Tomosynthesis. In: Xie, JXH, (ed.) Proceedings of Medical Image Understanding and Analysis 2012. (pp. 87 - 92). Department of Computer Science, Swansea University: Swansea, UK. Green open access
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Yang, G; Hipwell, JH; Hawkes, DJ; Arridge, SR; (2011) Unconstrained Simultaneous Scheme to Fully Couple Reconstruction and Registration for Digital Breast Tomosynthesis: A Feasible Study. In: Schnabel, J and Tanner, C and Karssemeijer, N and Nielsen, M and Giger, M and Hawkes, C, (eds.) Proceedings of the Workshop on Breast Image Analysis: In conjunction with the 14th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2011). (pp. 25 - 32). Department of Computer Science (DIKU), University of Copenhagen: Copenhagen, Denmark. Green open access
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Yang, G; Hipwell, JH; Tanner, C; Hawkes, DJ; Arridge, SR; (2012) Joint Registration and Limited-Angle Reconstruction of Digital Breast Tomosynthesis. In: Maidment, ADA and Bakic, PR and Gavenonis, S, (eds.) Breast Imaging: 11th International Workshop, IWDM 2012, Philadelphia, PA, USA, July 8-11, 2012: Proceedings. (pp. 713 - 720). Springer-Verlag: Berlin / Heidelberg, Germany. Green open access
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Conference item

Atkinson, D; Usman, M; Kakkar, LS; Arridge, SR; (2018) Geometry in MR Reconstruction. Presented at: Joint Annual Meeting ISMRM-ESMRMB 2018, Paris, France. Green open access
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Cochran, JM; Busch, DR; Ban, HY; Kavuri, VC; Schweiger, MJ; Arridge, SR; Yodh, AG; (2017) Multi-modal diffuse optical techniques for breast cancer neoadjuvant chemotherapy monitoring (Conference Presentation). Presented at: Multimodal Biomedical Imaging XII, San Francisco, California, United States. Gold open access
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Fonseca, M; Malone, E; Lucka, F; Ellwood, R; An, L; Arridge, S; Beard, P; (2017) Three-dimensional photoacoustic imaging and inversion for accurate quantification of chromophore distributions. Presented at: Conference on Photons Plus Ultrasound - Imaging and Sensing, San Francisco, CA. Green open access
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Thesis

Lockwood, NJ; (2016) The Global Imaging of Physiological and Pathophysiological Angiogenesis in live zebrafish using Optical Projection Tomography. Doctoral thesis , UCL (University College London). Green open access
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Tremoulheac, BR; (2015) Low-rank and sparse reconstruction in dynamic magnetic resonance imaging via proximal splitting methods. Doctoral thesis , UCL (University College London). Green open access
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Yang, G; (2012) Numerical Approaches for Solving the Combined Reconstruction and Registration of Digital Breast Tomosynthesis. Doctoral thesis , UCL (University College London). Green open access
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This list was generated on Tue Jan 27 01:49:12 2026 GMT.