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Number of items: 174.

Article

Abdelnabi, R; Foo, CS; Kaptein, SJF; Zhang, X; Do, TND; Langendries, L; Vangeel, L; ... Neyts, J; + view all Abdelnabi, R; Foo, CS; Kaptein, SJF; Zhang, X; Do, TND; Langendries, L; Vangeel, L; Breuer, J; Pang, J; Williams, R; Vergote, V; Heylen, E; Leyssen, P; Dallmeier, K; Coelmont, L; Chatterjee, AK; Mols, R; Augustijns, P; De Jonghe, S; Jochmans, D; Weynand, B; Neyts, J; - view fewer (2021) The combined treatment of Molnupiravir and Favipiravir results in a potentiation of antiviral efficacy in a SARS-CoV-2 hamster infection model. EBioMedicine , 72 , Article 103595. 10.1016/j.ebiom.2021.103595.

Ashford, F; Best, A; Dunn, SJ; Ahmed, Z; Siddiqui, H; Melville, J; Wilkinson, S; ... Jamrozy, D; + view all Ashford, F; Best, A; Dunn, SJ; Ahmed, Z; Siddiqui, H; Melville, J; Wilkinson, S; Mirza, J; Cumley, N; Stockton, J; Ferguson, J; Wheatley, L; Ratcliffe, E; Casey, A; Plant, T; Quick, J; Richter, A; Loman, N; McNally, A; Aggarwal, D; Blane, B; Brooks, E; Carabelli, AM; Churcher, CM; Galai, K; Girgis, ST; Gupta, RK; Hadjirin, NF; Leek, D; Ludden, C; McManus, GM; Palmer, S; Peacock, SJ; Smith, KS; Allara, E; Bibby, D; Bishop, C; Bosworth, A; Bradshaw, D; Chalker, V; Chand, M; Dabrera, G; Ellaby, N; Gallagher, E; Groves, N; Harrison, I; Hartman, H; Hopes, R; Hubb, J; Hutchings, S; Lackenby, A; Ledesma, J; Lee, D; Manesis, N; Manso, C; Mbisa, T; Miah, S; Muir, P; Myers, R; Osman, H; Patel, V; Pearson, C; Platt, S; Pymont, HM; Ramsay, M; Robinson, E; Schaefer, U; Thornton, A; Twohig, KA; Vipond, IB; Williams, D; Hamilton, WL; Warne, B; Aigrain, L; Alderton, A; Amato, R; Ariani, CV; Barrett, J; Bassett, AR; Beale, MA; Beaver, C; Bellis, KL; Betteridge, E; Bonfield, J; Bronner, IF; Chapman, MHS; Danesh, J; Davies, R; Dorman, MJ; Drury, E; Durham, J; Farr, BW; Foulser, L; Goncalves, S; Goodwin, S; Gourtovaia, M; Harrison, EM; Jackson, DK; James, K; Jamrozy, D; - view fewer (2022) SARS-CoV-2 Testing in the Community: Testing Positive Samples with the TaqMan SARS-CoV-2 Mutation Panel To Find Variants in Real Time. Journal of Clinical Microbiology , 60 (4) , Article e02408-21. 10.1128/jcm.02408-21.

Aswad, A; Aimola, G; Wight, D; Roychoudhury, P; Zimmermann, C; Hill, J; Lassner, D; ... Kaufer, BB; + view all Aswad, A; Aimola, G; Wight, D; Roychoudhury, P; Zimmermann, C; Hill, J; Lassner, D; Xie, H; Huang, M-L; Parrish, NF; Schultheiss, H-P; Venturini, C; Lager, S; Smith, GCS; Charnock-Jones, DS; Breuer, J; Greninger, AL; Kaufer, BB; - view fewer (2020) Evolutionary history of endogenous Human Herpesvirus 6 reflects human migration out of Africa. Molecular Biology and Evolution 10.1093/molbev/msaa190. (In press).

Atkinson, Laura; Lee, Jack CD; Lennon, Alexander; Shah, Divya; Storey, Nathaniel; Morfopoulou, Sofia; Harris, Kathryn A; ... Brown, Julianne R; + view all Atkinson, Laura; Lee, Jack CD; Lennon, Alexander; Shah, Divya; Storey, Nathaniel; Morfopoulou, Sofia; Harris, Kathryn A; Breuer, Judy; Brown, Julianne R; - view fewer (2023) Untargeted metagenomics protocol for the diagnosis of infection from CSF and tissue from sterile sites. Heliyon , 9 (9) , Article E19854. 10.1016/j.heliyon.2023.e19854.

Baltas, I; Boshier, FAT; Williams, CA; Bayzid, N; Cotic, M; Guerra-Assunção, JA; Irish-Tavares, D; ... Mahungu, TW; + view all Baltas, I; Boshier, FAT; Williams, CA; Bayzid, N; Cotic, M; Guerra-Assunção, JA; Irish-Tavares, D; Haque, T; Hart, J; Roy, S; Williams, R; Breuer, J; Mahungu, TW; - view fewer (2021) Post-vaccination COVID-19: A case-control study and genomic analysis of 119 breakthrough infections in partially vaccinated individuals. Clinical Infectious Diseases , Article ciab714. 10.1093/cid/ciab714. (In press).

Bate, J; Baker, S; Breuer, J; Chisholm, JC; Gray, J; Hambleton, S; Houlton, A; ... Heath, PT; + view all Bate, J; Baker, S; Breuer, J; Chisholm, JC; Gray, J; Hambleton, S; Houlton, A; Jit, M; Lowis, S; Makin, G; O'Sullivan, C; Patel, SR; Phillips, R; Ransinghe, N; Ramsay, ME; Skinner, R; Wheatley, K; Heath, PT; - view fewer (2019) PEPtalk2: Results of a pilot randomised controlled trial to compare VZIG and aciclovir as postexposure prophylaxis (PEP) against chickenpox in children with cancer. Archives of Disease in Childhood , 104 (1) pp. 25-29. 10.1136/archdischild-2017-314212.

Bekegnran, Cesar P; Driouich, Jean-Selim; Breuer, Judith; Barthelemy, Karine; Giocanti, Madeleine; de Lamballerie, Xavier; Kreins, Alexandra Y; ... Solas, Caroline; + view all Bekegnran, Cesar P; Driouich, Jean-Selim; Breuer, Judith; Barthelemy, Karine; Giocanti, Madeleine; de Lamballerie, Xavier; Kreins, Alexandra Y; Nougairede, Antoine; Solas, Caroline; - view fewer (2023) Simultaneous quantitation of favipiravir and its hydroxide metabolite in human plasma and hamster matrices using a UPLC-MS/MS method. Biomedical Chromatography 10.1002/bmc.5689. (In press).

Besbassi, Hajar; Garcia-Fogeda, Irene; Quinlivan, Mark; Breuer, Judy; Abrams, Steven; Hens, Niel; Ogunjimi, Benson; Besbassi, Hajar; Garcia-Fogeda, Irene; Quinlivan, Mark; Breuer, Judy; Abrams, Steven; Hens, Niel; Ogunjimi, Benson; Beutels, Philippe; - view fewer (2023) Modeling antibody dynamics following herpes zoster indicates that higher varicella-zoster virus viremia generates more VZV-specific antibodies. Frontiers in Immunology , 14 , Article 1104605. 10.3389/fimmu.2023.1104605.

Bharucha, T; Houlihan, CF; Breuer, J; (2019) Herpesvirus Infections of the Central Nervous System. Seminars in Neurology , 39 (3) pp. 369-382. 10.1055/s-0039-1687837.

Bharucha, T; Ming, D; Breuer, J; (2017) A critical appraisal of 'Shingrix', a novel herpes zoster subunit vaccine (HZ/Su or GSK1437173A) for varicella zoster virus. Human Vaccines & Immunotherapeutics , 13 (8) pp. 1789-1797. 10.1080/21645515.2017.1317410.

Bharucha, T; Oeser, C; Balloux, F; Brown, JR; Carbo, EC; Charlett, A; Chiu, CY; ... Field, N; + view all Bharucha, T; Oeser, C; Balloux, F; Brown, JR; Carbo, EC; Charlett, A; Chiu, CY; Claas, ECJ; de Goffau, MC; de Vries, JJC; Eloit, M; Hopkins, S; Huggett, JF; MacCannell, D; Morfopoulou, S; Nath, A; O'Sullivan, DM; Reoma, LB; Shaw, LP; Sidorov, I; Simner, PJ; Van Tan, L; Thomson, EC; van Dorp, L; Wilson, MR; Breuer, J; Field, N; - view fewer (2020) STROBE-metagenomics: a STROBE extension statement to guide the reporting of metagenomics studies. Lancet Infectious Diseases , 20 (10) E251-E260. 10.1016/S1473-3099(20)30199-7.

Bonanni, P; Breuer, J; Gershon, A; Gershon, M; Hryniewicz, W; Papaevangelou, V; Rentier, B; ... Wutzler, P; + view all Bonanni, P; Breuer, J; Gershon, A; Gershon, M; Hryniewicz, W; Papaevangelou, V; Rentier, B; Rumke, H; Sadzot-Delvaux, C; Senterre, J; Weil-Olivier, C; Wutzler, P; - view fewer (2009) Varicella vaccination in Europe - taking the practical approach. BMC Medicine , 7 , Article 26. 10.1186/1741-7015-7-26.

Boshier, FAT; Pang, J; Penner, J; Parker, M; Alders, N; Bamford, A; Grandjean, L; ... Breuer, J; + view all Boshier, FAT; Pang, J; Penner, J; Parker, M; Alders, N; Bamford, A; Grandjean, L; Grunewald, S; Hatcher, J; Best, T; Dalton, C; Bynoe, PD; Frauenfelder, C; Köeglmeier, J; Myerson, P; Roy, S; Williams, R; de Silva, TI; Goldstein, RA; Breuer, J; - view fewer (2021) Evolution of viral variants in remdesivir-treated and untreated SARS-CoV-2-infected pediatrics patients. Journal of Medical Virology 10.1002/jmv.27285. (In press).

Boshier, FAT; Venturini, C; Stirrup, O; Guerra-Assunção, JA; Alcolea-Medina, A; Becket, AH; Byott, M; ... COG-UK HOCI Variant Substudy consortium*, The COVID-19 Genomics; + view all Boshier, FAT; Venturini, C; Stirrup, O; Guerra-Assunção, JA; Alcolea-Medina, A; Becket, AH; Byott, M; Charalampous, T; Filipe, ADS; Frampton, D; Glaysher, S; Khan, T; Kulasegara-Shylini, R; Kele, B; Monahan, IM; Mollett, G; Parker, M; Pelosi, E; Randell, P; Roy, S; Taylor, JF; Weller, SJ; Wilson-Davies, E; Wade, P; Williams, R; Copas, AJ; Cutino-Moguel, T; Freemantle, N; Hayward, AC; Holmes, A; Hughes, J; Mahungu, TW; Nebbia, G; Nastouli, E; Partridge, DG; Pope, CF; Price, JR; Robson, SC; Saeed, K; Shin, GY; de Silva, TI; Snell, LB; Thomson, EC; Witney, AA; Breuer, J; COG-UK HOCI Variant Substudy consortium*, The COVID-19 Genomics; - view fewer (2021) The Alpha variant was not associated with excess nosocomial SARS-CoV-2 infection in a multi-centre UK hospital study. Journal of Infection , 83 (6) pp. 693-700. 10.1016/j.jinf.2021.09.022.

Bouwes Bavinck, JN; Feltkamp, MCW; Green, AC; Fiocco, M; Euvrard, S; Harwood, CA; Proby, CM; ... EPI-HPV-UV-CA group, .; + view all Bouwes Bavinck, JN; Feltkamp, MCW; Green, AC; Fiocco, M; Euvrard, S; Harwood, CA; Proby, CM; Naldi, L; Diphoorn, JCD; Venturuzzo, A; Tessari, G; Nindl, I; Sampogna, F; Abeni, D; Neale, RE; Goeman, JJ; Quint, KD; Halk, AB; Sneek, C; Genders, RE; de Koning, MNC; Quint, WGV; Wieland, U; Weissenborn, S; Waterboer, T; Pawlita, M; Pfister, H; EPI-HPV-UV-CA group, .; - view fewer (2018) Human papillomavirus and post-transplant cutaneous squamous-cell carcinoma: a multicenter, prospective cohort study. American Journal of Transplantation , 18 (5) pp. 1220-1230. 10.1111/ajt.14537.

Bramley, Alexandra; Crocker-Buque, Tim; Breuer, Judith; Mahungu, Tabitha W; (2021) Evidence of the reduction of acute circulating communicable viruses during the SARS-CoV-2 pandemic in London. [Letter]. Journal of Infection , 83 (4) pp. 496-522. 10.1016/j.jinf.2021.08.029.

Braspenning, SE; Sadaoka, T; Breuer, J; Verjans, GMGM; Ouwendijk, WJD; Depledge, DP; (2020) Decoding the Architecture of the Varicella-Zoster Virus Transcriptome. mBio , 11 (5) , Article e01568-20. 10.1128/mbio.01568-20.

Brenner, N; Mentzer, AJ; Butt, J; Michel, A; Prager, K; Brozy, J; Weissbrich, B; ... Waterboer, T; + view all Brenner, N; Mentzer, AJ; Butt, J; Michel, A; Prager, K; Brozy, J; Weissbrich, B; Aiello, AE; Meier, HCS; Breuer, J; Almond, R; Allen, N; Pawlita, M; Waterboer, T; - view fewer (2018) Validation of Multiplex Serology detecting human herpesviruses 1-5. PLoS One , 13 (12) , Article e0209379. 10.1371/journal.pone.0209379.

Breuer, J; (2018) Molecular Genetic Insights Into Varicella Zoster Virus (VZV), the vOka Vaccine Strain, and the Pathogenesis of Latency and Reactivation. The Journal of Infectious Diseases , 218 (suppl_2) S75-S80. 10.1093/infdis/jiy279.

Breuer, J; Pacou, M; Gauthier, A; Brown, MM; (2014) Herpes zoster as a risk factor for stroke and TIA: A retrospective cohort study in the UK. Neurology , 82 (3) pp. 206-212. 10.1212/WNL.0000000000000038.

Bridges, R; Correia, S; Wegner, F; Venturini, C; Palser, A; Whiter, RE; Kellam, P; ... Farrell, PJ; + view all Bridges, R; Correia, S; Wegner, F; Venturini, C; Palser, A; Whiter, RE; Kellam, P; Breuer, J; Farrell, PJ; - view fewer (2019) Essential role of inverted repeat in Epstein-Barr virus IR-1 in B cell transformation; geographical variation of the viral genome. Philosophical Transactions Of The Royal Society B-biological Sciences , 374 (1773) , Article 20180299. 10.1098/rstb.2018.0299.

Brown, AC; Bryant, JM; Einer-Jensen, K; Holdstock, J; Houniet, DT; Chan, JZ; Depledge, DP; ... Breuer, J; + view all Brown, AC; Bryant, JM; Einer-Jensen, K; Holdstock, J; Houniet, DT; Chan, JZ; Depledge, DP; Nikolayevskyy, V; Broda, A; Stone, MJ; Christiansen, MT; Williams, R; McAndrew, MB; Tutill, H; Brown, J; Melzer, M; Rosmarin, C; McHugh, TD; Shorten, RJ; Drobniewski, F; Speight, G; Breuer, J; - view fewer (2015) Rapid Whole-Genome Sequencing of Mycobacterium tuberculosis Isolates Directly from Clinical Samples. Journal of Clinical Microbiology , 53 (7) pp. 2230-2237. 10.1128/JCM.00486-15.

Brown, JR; Bharucha, T; Breuer, J; (2018) Encephalitis diagnosis using metagenomics: application of next generation sequencing for undiagnosed cases. Journal of Infection , 76 (3) pp. 225-240. 10.1016/j.jinf.2017.12.014.

Brown, JR; Morfopoulou, S; Hubb, J; Emmett, WA; Ip, W; Shah, D; Brooks, T; ... Breuer, J; + view all Brown, JR; Morfopoulou, S; Hubb, J; Emmett, WA; Ip, W; Shah, D; Brooks, T; Paine, SM; Anderson, G; Virasami, A; Tong, CY; Clark, DA; Plagnol, V; Jacques, TS; Qasim, W; Hubank, M; Breuer, J; - view fewer (2015) Astrovirus VA1/HMO-C: An Increasingly Recognized Neurotropic Pathogen in Immunocompromised Patients. Clin Infect Dis , 60 (6) 881 - 888. 10.1093/cid/ciu940.

Brown, JR; Roy, S; Ruis, C; Yara Romero, E; Shah, D; Williams, R; Breuer, J; (2016) Norovirus whole genome sequencing by SureSelect target enrichment: a robust and sensitive method. Journal of Clinical Microbiology , 54 (10) pp. 2530-2537. 10.1128/JCM.01052-16.

Brown, JR; Roy, S; Shah, D; Williams, CA; Williams, R; Dunn, H; Hartley, J; ... Breuer, J; + view all Brown, JR; Roy, S; Shah, D; Williams, CA; Williams, R; Dunn, H; Hartley, J; Harris, K; Breuer, J; - view fewer (2019) Norovirus transmission dynamics in a paediatric hospital using full genome sequences. Clinical Infectious Diseases , 68 (2) pp. 222-228. 10.1093/cid/ciy438.

Brown, JR; Roy, S; Tutill, H; Williams, R; Breuer, J; (2017) Super-infections and relapses occur in chronic norovirus infections. Journal of Clinical Virology , 96 pp. 44-48. 10.1016/j.jcv.2017.09.009.

Brown, JR; Shah, D; Breuer, J; (2016) Viral gastrointestinal infections and norovirus genotypes in a paediatric UK hospital, 2014-2015. Journal of Clinical Virology , 84 pp. 1-6. 10.1016/j.jcv.2016.08.298.

Brown, L-AK; Clark, I; Brown, JR; Breuer, J; Lowe, DM; (2017) Norovirus infection in primary immune deficiency. Reviews in Medical Virology , 27 (3) 10.1002/rmv.1926.

Brown, L-AK; Ruis, C; Clark, I; Roy, S; Brown, JR; Albuquerque, AS; Patel, SY; ... Lowe, DM; + view all Brown, L-AK; Ruis, C; Clark, I; Roy, S; Brown, JR; Albuquerque, AS; Patel, SY; Miller, J; Karim, MY; Dervisevic, S; Moore, J; Williams, CA; Cudini, J; Moreira, F; Neild, P; Seneviratne, SL; Workman, S; Toumpanakis, C; Atkinson, C; Burns, SO; Breuer, J; Lowe, DM; - view fewer (2019) A comprehensive characterization of chronic norovirus infection in immunodeficient hosts. Journal of Allergy and Clinical Immunology , 144 (5) pp. 1450-1453. 10.1016/j.jaci.2019.07.036.

Bucciol, G; Moens, L; Payne, K; Wollants, E; Mekahli, D; Levtchenko, E; Vermeulen, F; ... Meyts, I; + view all Bucciol, G; Moens, L; Payne, K; Wollants, E; Mekahli, D; Levtchenko, E; Vermeulen, F; Tousseyn, T; Gray, P; Ma, CS; Tangye, SG; Van Ranst, M; Brown, JR; Breuer, J; Meyts, I; - view fewer (2018) Chronic Aichi Virus Infection in a Patient with X-Linked Agammaglobulinemia. Journal of Clinical Immunology , 38 (7) pp. 748-752. 10.1007/s10875-018-0558-z.

Buddle, Sarah; Brown, Li-An K; Morfopoulou, Sofia; Torres Montaguth, Oscar Enrique; Scoto, Mariacristina; Herder, Vanessa; Dhawan, Anil; ... Breuer, Judith; + view all Buddle, Sarah; Brown, Li-An K; Morfopoulou, Sofia; Torres Montaguth, Oscar Enrique; Scoto, Mariacristina; Herder, Vanessa; Dhawan, Anil; Brown, Julianne R; Atkinson, Laura; Kopec, Angelika; Davis, Dee; Storey, Nathaniel; Campos, Luis; Sebire, Neil; Macpherson, Hannah; Lee, Jasmaine; Orton, Richard; Baranello, Giovanni; Asamaphan, Patawee; Ilia, Georgios; Karda, Rajvinder; Belfield, Holly; ISARIC4C Investigators; Counsell, John; Waddington, Simon N; Thomson, Emma C; Muntoni, Francesco; Breuer, Judith; - view fewer (2026) Contaminating plasmid sequences and disrupted vector genomes in the liver following adeno-associated virus gene therapy. Nature Medicine 10.1038/s41591-025-04073-z. (In press).

Buddle, Sarah; Torres, Oscar; Morfopoulou, Sofia; Breuer, Judith; Brown, Julianne R; (2025) The use of metagenomics to enhance diagnosis of encephalitis. Expert Review of Molecular Diagnostics pp. 1-18. 10.1080/14737159.2025.2500655. (In press).

Butcher, RMR; Sokana, O; Jack, K; Macleod, CK; Marks, M; Kalae, E; Sui, L; ... Roberts, CH; + view all Butcher, RMR; Sokana, O; Jack, K; Macleod, CK; Marks, M; Kalae, E; Sui, L; Russell, C; Tutill, HJ; Williams, RJ; Breuer, J; Willis, R; Le Mesurier, RT; Mabey, DCW; Solomon, AW; Roberts, CH; - view fewer (2016) Correction: Low Prevalence of Conjunctival Infection with Chlamydia trachomatis in a Treatment-Naïve Trachoma-Endemic Region of the Solomon Islands. [Corrigendum]. PLoS Negl Trop Dis , 10 (10) , Article e0005051. 10.1371/journal.pntd.0005051.

Butcher, RMR; Sokana, O; Jack, K; Macleod, CK; Marks, ME; Kalae, E; Sui, L; ... Roberts, CH; + view all Butcher, RMR; Sokana, O; Jack, K; Macleod, CK; Marks, ME; Kalae, E; Sui, L; Russell, C; Tutill, HJ; Williams, RJ; Breuer, J; Willis, R; Le Mesurier, RT; Mabey, DCW; Solomon, AW; Roberts, CH; - view fewer (2016) Low Prevalence of Conjunctival Infection with Chlamydia trachomatis in a Treatment-Naive Trachoma-Endemic Region of the Solomon Islands. PLoS Neglected Tropical Diseases , 10 (9) , Article e0004863. 10.1371/journal.pntd.0004863.

Butler, Christopher C; Hobbs, FD Richard; Gbinigie, Oghenekome A; Rahman, Najib M; Hayward, Gail; Richards, Duncan B; Dorward, Jienchi; ... PANORAMIC Trial Collaborative, Group; + view all Butler, Christopher C; Hobbs, FD Richard; Gbinigie, Oghenekome A; Rahman, Najib M; Hayward, Gail; Richards, Duncan B; Dorward, Jienchi; Lowe, David M; Standing, Joseph F; Breuer, Judith; Khoo, Saye; Petrou, Stavros; Hood, Kerenza; Nguyen-Van-Tam, Jonathan S; Patel, Mahendra G; Saville, Benjamin R; Marion, Joe; Ogburn, Emma; Allen, Julie; Rutter, Heather; Francis, Nick; Thomas, Nicholas PB; Evans, Philip; Dobson, Melissa; Madden, Tracie-Ann; Holmes, Jane; Harris, Victoria; Png, May Ee; Lown, Mark; van Hecke, Oliver; Detry, Michelle A; Saunders, Christina T; Fitzgerald, Mark; Berry, Nicholas S; Mwandigha, Lazaro; Galal, Ushma; Mort, Sam; Jani, Bhautesh D; Hart, Nigel D; Ahmed, Haroon; Butler, Daniel; McKenna, Micheal; Chalk, Jem; Lavallee, Layla; Hadley, Elizabeth; Cureton, Lucy; Benysek, Magdalena; Andersson, Monique; Coates, Maria; Barrett, Sarah; Bateman, Clare; Davies, Jennifer C; Raymundo-Wood, Ivy; Ustianowski, Andrew; Carson-Stevens, Andrew; Yu, Ly-Mee; Little, Paul; PANORAMIC Trial Collaborative, Group; - view fewer (2023) Molnupiravir plus usual care versus usual care alone as early treatment for adults with COVID-19 at increased risk of adverse outcomes (PANORAMIC): an open-label, platform-adaptive randomised controlled trial. Tha Lancet , 401 (10373) pp. 281-193. 10.1016/S0140-6736(22)02597-1.

Camiolo, Salvatore; Suarez, Nicolas M; Chalka, Antonia; Venturini, Cristina; Breuer, Judith; Davison, Andrew J; (2021) GRACy: A tool for analysing human cytomegalovirus sequence data. Virus Evolution , 7 (1) , Article veaa099. 10.1093/ve/veaa099.

Chan, Michele; Linn, Me Me Nay; O'Hagan, Thomas; Guerra-Assunção, José Afonso; Lackenby, Angie; Workman, Sarita; Dacre, Anna; ... Lowe, David M; + view all Chan, Michele; Linn, Me Me Nay; O'Hagan, Thomas; Guerra-Assunção, José Afonso; Lackenby, Angie; Workman, Sarita; Dacre, Anna; Burns, Siobhan O; Breuer, Judith; Hart, Jennifer; Tadros, Susan; Lowe, David M; - view fewer (2023) Persistent SARS-CoV-2 PCR Positivity Despite Anti-viral Treatment in Immunodeficient Patients. Journal of Clinical Immunology , 43 pp. 1083-1092. 10.1007/s10875-023-01504-9.

Charles, Oscar J; Venturini, Cristina; Gantt, Soren; Atkinson, Claire; Griffiths, Paul; Goldstein, Richard A; Breuer, Judith; (2023) Genomic and geographical structure of human cytomegalovirus. Proceedings of the National Academy of Sciences (PNAS) , 120 (30) , Article e2221797120. 10.1073/pnas.2221797120.

Chetty, Kritika; Cheng, Iek; Kaliakatsos, Marios; Gonzalez-Granado, Luis Ignacio; Klapsa, Dimitra; Martin, Javier; Bamford, Alasdair; ... Booth, Claire; + view all Chetty, Kritika; Cheng, Iek; Kaliakatsos, Marios; Gonzalez-Granado, Luis Ignacio; Klapsa, Dimitra; Martin, Javier; Bamford, Alasdair; Breuer, Judith; Booth, Claire; - view fewer (2022) Case report: Novel treatment regimen for enterovirus encephalitis in SCID. Frontiers in Immunology , 13 , Article 930031. 10.3389/fimmu.2022.930031.

Chhabra, Preeti; Tully, Damien C; Mans, Janet; Niendorf, Sandra; Barclay, Leslie; Cannon, Jennifer L; Montmayeur, Anna M; ... Vinjé, Jan; + view all Chhabra, Preeti; Tully, Damien C; Mans, Janet; Niendorf, Sandra; Barclay, Leslie; Cannon, Jennifer L; Montmayeur, Anna M; Pan, Chao-Yang; Page, Nicola; Williams, Rachel; Tutill, Helena; Roy, Sunando; Celma, Cristina; Beard, Stuart; Mallory, Michael L; Manouana, Gédéon Prince; Velavan, Thirumalaisamy P; Adegnika, Ayola Akim; Kremsner, Peter G; Lindesmith, Lisa C; Hué, Stéphane; Baric, Ralph S; Breuer, Judith; Vinjé, Jan; - view fewer (2024) Emergence of Novel Norovirus GII.4 Variant. Emerging Infectious Diseases , 30 (1) pp. 163-167. 10.3201/eid3001.231003.

Christiansen, MT; Brown, AC; Kundu, S; Tutill, HJ; Williams, R; Brown, JR; Holdstock, J; ... Breuer, J; + view all Christiansen, MT; Brown, AC; Kundu, S; Tutill, HJ; Williams, R; Brown, JR; Holdstock, J; Holland, MJ; Stevenson, S; Dave, J; Tong, CY; Einer-Jensen, K; Depledge, DP; Breuer, J; - view fewer (2014) Whole-genome enrichment and sequencing of Chlamydia trachomatis directly from clinical samples. BMC Infect Dis , 14 (1) , Article 591. 10.1186/s12879-014-0591-3.

Christiansen, MT; Hullegie, SJ; Schutten, M; Einer-Jensen, K; Tutill, HJ; Breuer, J; Rijnders, BJA; (2017) Use of whole genome sequencing in the Dutch Acute HCV in HIV study: focus on transmitted antiviral resistance. Clinical Microbiology and Infection , 23 (2) 123.e1-123.e4. 10.1016/j.cmi.2016.09.018.

Clark, SA; Doyle, R; Lucidarme, J; Borrow, R; Breuer, J; (2018) Targeted DNA enrichment and whole genome sequencing of Neisseria meningitidis directly from clinical specimens. International Journal of Medical Microbiology , 308 (2) pp. 256-262. 10.1016/j.ijmm.2017.11.004.

Correia, S; Bridges, R; Wegner, F; Venturini, C; Palser, A; Middeldorp, JM; Cohen, JI; ... Farrell, PJ; + view all Correia, S; Bridges, R; Wegner, F; Venturini, C; Palser, A; Middeldorp, JM; Cohen, JI; Lorenzetti, MA; Bassano, I; White, RE; Kellam, P; Breuer, J; Farrell, PJ; - view fewer (2018) Sequence Variation of Epstein-Barr Virus: Viral Types, Geography, Codon Usage, and Diseases. Journal of Virology , 92 (22) , Article e01132-18. 10.1128/JVI.01132-18.

Costa, E; Buxton, J; Brown, J; Templeton, KE; Breuer, J; Johannessen, I; (2016) Fatal disseminated varicella zoster infection following zoster vaccination in an immunocompromised patient. BMJ Case Reports , 2016 10.1136/bcr-2015-212688. (In press).

Cudini, J; Roy, S; Houldcroft, CJ; Bryant, JM; Depledge, DP; Tutill, H; Veys, P; ... Breuer, J; + view all Cudini, J; Roy, S; Houldcroft, CJ; Bryant, JM; Depledge, DP; Tutill, H; Veys, P; Williams, R; Worth, AJJ; Tamuri, AU; Goldstein, RA; Breuer, J; - view fewer (2019) Human cytomegalovirus haplotype reconstruction reveals high diversity due to superinfection and evidence of within-host recombination. Proceedings of the National Academy of Sciences of the United States of America , 116 (12) pp. 5693-5698. 10.1073/pnas.1818130116.

Datir, R; Kemp, S; El Bouzidi, K; Mlchocova, P; Goldstein, R; Breuer, J; Towers, GJ; ... Gupta, RK; + view all Datir, R; Kemp, S; El Bouzidi, K; Mlchocova, P; Goldstein, R; Breuer, J; Towers, GJ; Jolly, C; Quiñones-Mateu, ME; Dakum, PS; Ndembi, N; Gupta, RK; - view fewer (2020) In Vivo Emergence of a Novel Protease Inhibitor Resistance Signature in HIV-1 Matrix. mBio , 11 (6) 10.1128/mBio.02036-20.

Davidson, Jennifer A; Banerjee, Amitava; Strongman, Helen; Herrett, Emily; Smeeth, Liam; Breuer, Judith; Warren-Gash, Charlotte; (2023) Acute Cardiovascular Events After COVID-19 in England in 2020: A Self-Controlled Case Series Study. Clinical Epidemiology , 15 pp. 911-921. 10.2147/CLEP.S421062.

de Vries, JJC; Brown, JR; Fischer, N; Sidorov, IA; Morfopoulou, S; Huang, J; Munnink, BBO; ... Claas, ECJ; + view all de Vries, JJC; Brown, JR; Fischer, N; Sidorov, IA; Morfopoulou, S; Huang, J; Munnink, BBO; Sayiner, A; Bulgurcu, A; Rodriguez, C; Gricourt, G; Keyaerts, E; Beller, L; Bachofen, C; Kubacki, J; Samuel, C; Florian, L; Dennis, S; Beer, M; Hoeper, D; Huber, M; Kufner, V; Zaheri, M; Lebrand, A; Papa, A; van Boheemen, S; Kroes, ACM; Breuer, J; Lopez-Labrador, FX; Claas, ECJ; - view fewer (2021) Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples. Journal of Clinical Virology , 141 , Article 104908. 10.1016/j.jcv.2021.104908.

Depledge, D; Gray, E; Kundu, S; Cooray, S; Poulsen, A; Aaby, P; Breuer, J; (2014) Evolution of Cocirculating Varicella-Zoster Virus Genotypes during a Chickenpox Outbreak in Guinea-Bissau. Journal of Virology , 88 (24) pp. 13936-13946. 10.1128/JVI.02337-14.

Depledge, DP; Brown, J; Macanovic, J; Underhill, G; Breuer, J; (2016) Viral genome sequencing proves nosocomial transmission of fatal varicella. Journal of Infectious Diseases , 214 (9) pp. 1399-1402. 10.1093/infdis/jiw398.

Depledge, DP; Cudini, J; Kundu, S; Atkinson, C; Brown, JR; Haque, T; Houldcroft, CJ; ... Breuer, J; + view all Depledge, DP; Cudini, J; Kundu, S; Atkinson, C; Brown, JR; Haque, T; Houldcroft, CJ; Koay, ES; McGill, F; Milne, R; Whitfield, T; Tang, JW; Underhill, G; Bergstrom, T; Norberg, P; Goldstein, R; Solomon, T; Breuer, J; - view fewer (2018) High Viral Diversity and Mixed Infections in Cerebral Spinal Fluid From Cases of Varicella Zoster Virus Encephalitis. The Journal of Infectious Diseases 10.1093/infdis/jiy358.

Depledge, DP; Kundu, S; Jensen, NJ; Gray, ER; Jones, M; Steinberg, S; Gershon, A; ... Breuer, J; + view all Depledge, DP; Kundu, S; Jensen, NJ; Gray, ER; Jones, M; Steinberg, S; Gershon, A; Kinchington, PR; Schmid, DS; Balloux, F; Nichols, RA; Breuer, J; - view fewer (2014) Deep Sequencing of Viral Genomes Provides Insight into the Evolution and Pathogenesis of Varicella Zoster Virus and Its Vaccine in Humans. Molecular Biology and Evolution , 31 (2) pp. 397-409. 10.1093/molbev/mst210.

Depledge, DP; Ouwendijk, WJD; Sadaoka, T; Braspenning, SE; Mori, Y; Cohrs, RJ; Verjans, GMGM; Depledge, DP; Ouwendijk, WJD; Sadaoka, T; Braspenning, SE; Mori, Y; Cohrs, RJ; Verjans, GMGM; Breuer, J; - view fewer (2018) A spliced latency-associated VZV transcript maps antisense to the viral transactivator gene 61. Nature Communications , 9 (1) , Article 1167. 10.1038/s41467-018-03569-2.

Depledge, DP; Palser, AL; Watson, SJ; Lai, IY; Gray, ER; Grant, P; Kanda, RK; ... Breuer, J; + view all Depledge, DP; Palser, AL; Watson, SJ; Lai, IY; Gray, ER; Grant, P; Kanda, RK; Leproust, E; Kellam, P; Breuer, J; - view fewer (2011) Correction: specific capture and whole-genome sequencing of viruses from clinical samples. PLOS One , 7 (1) , Article e27805. 10.1371/annotation/3f1444bc-ab9d-4112-958a-2e068792f26f.

Depledge, DP; Palser, AL; Watson, SJ; Lai, IY; Gray, ER; Grant, P; Kanda, RK; ... Breuer, J; + view all Depledge, DP; Palser, AL; Watson, SJ; Lai, IY; Gray, ER; Grant, P; Kanda, RK; Leproust, E; Kellam, P; Breuer, J; - view fewer (2011) Specific capture and whole-genome sequencing of viruses from clinical samples. PLOS One , 6 (11) , Article e27805. 10.1371/journal.pone.0027805.

Depledge, DP; Yamanishi, K; Gomi, Y; Gershon, AA; Breuer, J; (2016) Deep Sequencing of Distinct Preparations of the Live Attenuated Varicella-Zoster Virus Vaccine Reveals a Conserved Core of Attenuating Single-Nucleotide Polymorphisms. Journal of Virology , 90 (19) pp. 8698-8704. 10.1128/JVI.00998-16.

Devakumar, D; Bamford, A; Ferreira, MU; Broad, J; Rosch, RE; Groce, N; Breuer, J; ... Abubakar, I; + view all Devakumar, D; Bamford, A; Ferreira, MU; Broad, J; Rosch, RE; Groce, N; Breuer, J; Cardoso, MA; Copp, A; Alexandre, P; Rodrigues, LC; Abubakar, I; - view fewer (2018) Infectious causes of microcephaly: epidemiology, pathogenesis, diagnosis, and management. The Lancet Infectious Diseases , 18 (1) e13-e13. 10.1016/S1473-3099(17)30398-5.

Doyle, RM; Burgess, C; Williams, R; Gorton, R; Booth, H; Brown, J; Bryant, JM; ... Breuer, J; + view all Doyle, RM; Burgess, C; Williams, R; Gorton, R; Booth, H; Brown, J; Bryant, JM; Chan, J; Creer, D; Holdstock, J; Kunst, H; Lozewicz, S; Platt, G; Yara Romero, E; Speight, G; Tiberi, S; Abubakar, I; Lipman, M; McHugh, TD; Breuer, J; - view fewer (2018) Direct whole genome sequencing of sputum accurately identifies drug resistant Mycobacterium tuberculosis faster than MGIT culture sequencing. Journal of Clinical Microbiology 10.1128/JCM.00666-18. (In press).

Eckert, SE; Chan, JZ-M; Houniet, D; PATHSEEK consortium, .; Breuer, J; Speight, G; (2016) Enrichment by hybridisation of long DNA fragments for Nanopore sequencing. Microbial Genomics , 2 (9) , Article e000087. 10.1099/mgen.0.000087.

El Bouzidi, K; Kemp, SA; Datir, RP; Murtala-Ibrahim, F; Aliyu, A; Kwaghe, V; Frampton, D; ... Gupta, RK; + view all El Bouzidi, K; Kemp, SA; Datir, RP; Murtala-Ibrahim, F; Aliyu, A; Kwaghe, V; Frampton, D; Roy, S; Breuer, J; Sabin, CA; Ogbanufe, O; Charurat, ME; Bonsall, D; Golubchik, T; Fraser, C; Dakum, P; Ndembi, N; Gupta, RK; - view fewer (2020) High prevalence of integrase mutation L74I in West African HIV-1 subtypes prior to integrase inhibitor treatment. Journal of Antimicrobial Chemotherapy 10.1093/jac/dkaa033.

Eleftheriou, D; Moraitis, E; Hong, Y; Turmaine, M; Venturini, C; Ganesan, V; Breuer, J; ... Brogan, P; + view all Eleftheriou, D; Moraitis, E; Hong, Y; Turmaine, M; Venturini, C; Ganesan, V; Breuer, J; Klein, N; Brogan, P; - view fewer (2019) Microparticle-mediated VZV propagation and endothelial activation: Mechanism of VZV vasculopathy. Neurology 10.1212/WNL.0000000000008885. (In press).

Flowers, Paul; Leiser, Ruth; Mapp, Fiona; McLeod, Julie; Stirrup, Oliver; Illingworth, Christopher JR; Blackstone, James; Flowers, Paul; Leiser, Ruth; Mapp, Fiona; McLeod, Julie; Stirrup, Oliver; Illingworth, Christopher JR; Blackstone, James; Breuer, Judith; - view fewer (2023) A qualitative process evaluation using the behaviour change wheel approach: Did a whole genome sequence report form (SRF) used to reduce nosocomial SARS-CoV-2 within UK hospitals operate as anticipated? British Journal of Health Psychology 10.1111/bjhp.12666.

Forbes, H; Douglas, I; Finn, A; Breuer, J; Bhaskaran, K; Smeeth, L; Packer, S; ... Warren-Gash, C; + view all Forbes, H; Douglas, I; Finn, A; Breuer, J; Bhaskaran, K; Smeeth, L; Packer, S; Langan, SM; Mansfield, KE; Marlow, R; Whitaker, H; Warren-Gash, C; - view fewer (2020) Risk of herpes zoster after exposure to varicella to explore the exogenous boosting hypothesis: self controlled case series study using UK electronic healthcare data. The BMJ , 368 , Article l6987. 10.1136/bmj.l6987.

Forbes, HJ; Benjamin, L; Breuer, J; (2017) Correction: The association between human herpesvirus infections and stroke: a systematic review protocol. BMJ Open , 7 (7) , Article e016427. 10.1136/bmjopen-2017-016427corr1.

Forbes, HJ; Benjamin, L; Breuer, J; Brown, MM; Langan, SM; Minassian, C; Smeeth, L; ... Warren-Gash, C; + view all Forbes, HJ; Benjamin, L; Breuer, J; Brown, MM; Langan, SM; Minassian, C; Smeeth, L; Thomas, SL; Warren-Gash, C; - view fewer (2017) The association between human herpesvirus infections and stroke: a systematic review protocol. BMJ Open , 7 (5) , Article e016427. 10.1136/bmjopen-2017-016427.

Forbes, HJ; Williamson, E; Benjamin, L; Breuer, J; Brown, MM; Langan, SM; Minassian, C; ... Warren-Gash, C; + view all Forbes, HJ; Williamson, E; Benjamin, L; Breuer, J; Brown, MM; Langan, SM; Minassian, C; Smeeth, L; Thomas, SL; Warren-Gash, C; - view fewer (2018) Association of herpesviruses and stroke: Systematic review and meta-analysis. PLoS One , 13 (11) , Article e0206163. 10.1371/journal.pone.0206163.

Fragaszy, EB; Quinlivan, M; Breuer, J; Craig, R; Hutchings, S; Kidd, M; Mindell, J; Fragaszy, EB; Quinlivan, M; Breuer, J; Craig, R; Hutchings, S; Kidd, M; Mindell, J; Hayward, AC; - view fewer (2015) Population-level susceptibility, severity and spread of pandemic influenza: design of, and initial results from, a pre-pandemic and hibernating pandemic phase study using cross-sectional data from the Health Survey for England (HSE). Public Health Research , 3 (6) 10.3310/phr03060.

Fu, Michael X; Ingram, Jennifer; Roberts, Courtney; Nurmi, Visa; Watkins, Emma; Dempsey, Nina; Golubchik, Tanya; ... Harvala, Heli; + view all Fu, Michael X; Ingram, Jennifer; Roberts, Courtney; Nurmi, Visa; Watkins, Emma; Dempsey, Nina; Golubchik, Tanya; Breuer, Judith; Brailsford, Su; Irving, William L; Andersson, Monique; Simmonds, Peter; Harvala, Heli; - view fewer (2024) Blood donation screening for hepatitis B virus core antibodies: The importance of confirmatory testing and initial implication for rare blood donor groups. Vox Sanguinis 10.1111/vox.13608. (In press).

Fu, MX; Simmonds, P; Andreani, J; Baklan, H; Webster, M; Asadi, R; Golubchik, T; ... Harvala, H; + view all Fu, MX; Simmonds, P; Andreani, J; Baklan, H; Webster, M; Asadi, R; Golubchik, T; Breuer, J; Ijaz, S; Ushiro-Lumb, I; Brailsford, S; Irving, WL; Andersson, M; Harvala, H; - view fewer (2023) Ultrasensitive PCR system for HBV DNA detection: Risk stratification for occult hepatitis B virus infection in English blood donors. Journal of Medical Virology , 95 (10) , Article e29144. 10.1002/jmv.29144.

Gaiottino, J; Giovannoni, G; Breuer, J; Tang, JW; (2019) Chronic-relapsing varicella zoster meningitis – Successfully treated with varicella vaccine. Journal of Infection , 79 (1) pp. 61-74. 10.1016/j.jinf.2019.04.009.

Gates, S; Andreani, J; Dewar, R; Smith, DB; Templeton, K; Child, HT; Breuer, J; ... Harvala, H; + view all Gates, S; Andreani, J; Dewar, R; Smith, DB; Templeton, K; Child, HT; Breuer, J; Golubchik, T; Bassano, I; Wade, MJ; Jeffries, AR; Simmonds, P; Harvala, H; - view fewer (2023) Postpandemic rebound of adeno-associated virus type 2 (AAV2) infections temporally associated with an outbreak of unexplained severe acute hepatitis in children in the United Kingdom. Journal of Medical Virology , 95 (7) , Article e28921. 10.1002/jmv.28921.

Gbinigie, Oghenekome; Ogburn, Emma; Allen, Julie; Dorward, Jienchi; Dobson, Melissa; Madden, Tracie-Ann; Yu, Ly-Mee; ... Butler, Christopher C; + view all Gbinigie, Oghenekome; Ogburn, Emma; Allen, Julie; Dorward, Jienchi; Dobson, Melissa; Madden, Tracie-Ann; Yu, Ly-Mee; Lowe, David M; Rahman, Najib; Petrou, Stavros; Richards, Duncan; Hood, Kerenza; Patel, Mahendra; Saville, Benjamin R; Marion, Joe; Holmes, Jane; Png, May Ee; Hayward, Gail; Lown, Mark; Harris, Victoria; Jani, Bhautesh; Hart, Nigel; Khoo, Saye; Rutter, Heather; Chalk, Jem; Standing, Joseph F; Breuer, Judith; Lavallee, Layla; Hadley, Elizabeth; Cureton, Lucy; Benysek, Magdalena; Andersson, Monique I; Francis, Nick; Thomas, Nicholas PB; Evans, Philip; van Hecke, Oliver; Koshkouei, Mona; Coates, Maria; Barrett, Sarah; Bateman, Clare; Davies, Jennifer; Raymundo-Wood, Ivy; Ustianowski, Andrew; Nguyen-Van-Tam, Jonathan; Carson-Stevens, Andrew; Hobbs, Richard; Little, Paul; Butler, Christopher C; - view fewer (2023) Platform adaptive trial of novel antivirals for early treatment of COVID-19 In the community (PANORAMIC): protocol for a randomised, controlled, open-label, adaptive platform trial of community novel antiviral treatment of COVID-19 in people at increased risk of more severe disease. BMJ Open , 13 (8) , Article e069176. 10.1136/bmjopen-2022-069176.

Ghasemian, Ehsan; Faal, Nkoyo; Pickering, Harry; Sillah, Ansumana; Breuer, Judith; Bailey, Robin L; Mabey, David; Ghasemian, Ehsan; Faal, Nkoyo; Pickering, Harry; Sillah, Ansumana; Breuer, Judith; Bailey, Robin L; Mabey, David; Holland, Martin J; - view fewer (2024) Genomic insights into local-scale evolution of ocular Chlamydia trachomatis strains within and between individuals in Gambian trachoma-endemic villages. Microbial Genomics , 10 (3) , Article 001210. 10.1099/mgen.0.001210.

Gil, E; Roy, S; Best, T; Hatcher, J; Breuer, J; (2023) Increasing rhinovirus prevalence in paediatric intensive care patients since the SARS-CoV2 pandemic. Journal of Clinical Virology , 166 , Article 105555. 10.1016/j.jcv.2023.105555.

Göbel, K; Pankratz, S; Asaridou, C-M; Herrmann, AM; Bittner, S; Merker, M; Ruck, T; ... Meuth, SG; + view all Göbel, K; Pankratz, S; Asaridou, C-M; Herrmann, AM; Bittner, S; Merker, M; Ruck, T; Glumm, S; Langhauser, F; Kraft, P; Krug, TF; Breuer, J; Herold, M; Gross, CC; Beckmann, D; Korb-Pap, A; Schuhmann, MK; Kuerten, S; Mitroulis, I; Ruppert, C; Nolte, MW; Panousis, C; Klotz, L; Kehrel, B; Korn, T; Langer, HF; Pap, T; Nieswandt, B; Wiendl, H; Chavakis, T; Kleinschnitz, C; Meuth, SG; - view fewer (2016) Blood coagulation factor XII drives adaptive immunity during neuroinflammation via CD87-mediated modulation of dendritic cells. Nature Communications , 7 , Article 11626. 10.1038/ncomms11626.

Grant, HE; Roy, S; Williams, R; Tutill, H; Ferns, B; Cane, PA; Carswell, JW; ... Leigh Brown, AJ; + view all Grant, HE; Roy, S; Williams, R; Tutill, H; Ferns, B; Cane, PA; Carswell, JW; Ssemwanga, D; Kaleebu, P; Breuer, J; Leigh Brown, AJ; - view fewer (2022) A large population sample of African HIV genomes from the 1980s reveals a reduction in subtype D over time associated with propensity for CXCR4 tropism. Retrovirology , 19 , Article 28. 10.1186/s12977-022-00612-5.

Gray, ER; Garson, JA; Breuer, J; Edwards, S; Kellam, P; Pillay, D; Towers, GJ; (2011) No Evidence of XMRV or Related Retroviruses in a London HIV-1-Positive Patient Cohort. PLOS ONE , 6 (3) , Article e18096. 10.1371/journal.pone.0018096.

Groom, HCT; Boucherit, VC; Makinson, K; Randal, E; Baptista, S; Hagan, S; Gow, JW; ... Bishop, KN; + view all Groom, HCT; Boucherit, VC; Makinson, K; Randal, E; Baptista, S; Hagan, S; Gow, JW; Mattes, FM; Breuer, J; Kerr, JR; Stoye, JP; Bishop, KN; - view fewer (2010) Absence of xenotropic murine leukaemia virus-related virus in UK patients with chronic fatigue syndrome. Retrovirology , 7 , Article 10. 10.1186/1742-4690-7-10.

Guerra-Assunção, José Afonso; van Kampen, Jeroen JA; Roy, Sunando; Remeijer, Lies; Breuer, Judy; Verjans, Georges MGM; (2021) Cluster of Symptomatic Graft-to-Host Transmission of Herpes Simplex Virus Type 1 in an Endothelial Keratoplasty Setting. Ophthalmology Science , 1 (3) , Article 100051. 10.1016/j.xops.2021.100051.

Harbecke, R; Jensen, NJ; Depledge, DP; Johnson, GR; Ashbaugh, ME; Schmid, DS; Breuer, J; ... Oxman, MN; + view all Harbecke, R; Jensen, NJ; Depledge, DP; Johnson, GR; Ashbaugh, ME; Schmid, DS; Breuer, J; Levin, MJ; Oxman, MN; - view fewer (2020) Recurrent herpes zoster in the Shingles Prevention Study: Are second episodes caused by the same varicella-zoster virus strain? Vaccine , 38 (2) pp. 150-157. 10.1016/j.vaccine.2019.10.038.

Heath, G; Depledge, DP; Brown, JR; Hale, AD; Tutil, H; Williams, R; Breuer, J; (2017) Acute Retinal Necrosis Caused by the Zoster Vaccine Virus. Clinical Infectious Diseases , 65 (12) pp. 2122-2125. 10.1093/cid/cix683.

Herberg, U; Linden, K; Dewald, O; Gatzweiler, E; Seehase, M; Duerr, GD; Doerner, J; ... Breuer, J; + view all Herberg, U; Linden, K; Dewald, O; Gatzweiler, E; Seehase, M; Duerr, GD; Doerner, J; Kleppe, S; Ladage, D; Breuer, J; - view fewer (2016) 3D Real-Time Echocardiography Combined with Mini Pressure Wire Generate Reliable Pressure-Volume Loops in Small Hearts. PLoS One , 11 (10) , Article e0165397. 10.1371/journal.pone.0165397.

Ho, Antonia; Orton, Richard; Tayler, Rachel; Asamaphan, Patawee; Herder, Vanessa; Davis, Chris; Tong, Lily; ... Thomson, Emma C; + view all Ho, Antonia; Orton, Richard; Tayler, Rachel; Asamaphan, Patawee; Herder, Vanessa; Davis, Chris; Tong, Lily; Smollett, Katherine; Manali, Maria; Allan, Jay; Rawlik, Konrad; McDonald, Sarah E; Vink, Elen; Pollock, Louisa; Gannon, Louise; Evans, Clair; McMenamin, Jim; Roy, Kirsty; Marsh, Kimberly; Divala, Titus; Holden, Matthew TG; Lockhart, Michael; Yirrell, David; Currie, Sandra; O'Leary, Maureen; Henderson, David; Shepherd, Samantha J; Jackson, Celia; Gunson, Rory; MacLean, Alasdair; McInnes, Neil; Bradley-Stewart, Amanda; Battle, Richard; Hollenbach, Jill; Henderson, Paul; Odam, Miranda; Chikowore, Primrose; Oosthuyzen, Wilna; Chand, Meera; Hamilton, Melissa Shea; Estrada-Rivadeneyra, Diego; Levin, Michael; Avramidis, Nikos; Pairo-Castineira, Erola; Vitart, Veronique; Wilkie, Craig; DIAMONDS consortium, .; ISARIC4C investigators, .; Palmarini, Massimo; Ray, Surajit; Robertson, David L; da Silva Filipe, Ana; Willett, Brian J; Breuer, Judith; Semple, Malcolm G; Turner, David; Baillie, J Kenneth; Thomson, Emma C; - view fewer (2023) Adeno-associated virus 2 infection in children with non-A-E hepatitis. Nature 10.1038/s41586-023-05948-2. (In press).

Houldcroft, CJ; Beale, MA; Breuer, J; (2017) Clinical and biological insights from viral genome sequencing. [Review]. Nature Reviews Microbiology , 15 (3) pp. 183-192. 10.1038/nrmicro.2016.182.

Houldcroft, CJ; Breuer, J; (2015) Tales from the crypt and coral reef: the successes and challenges of identifying new herpesviruses using metagenomics. Front Microbiol , 6 , Article 188. 10.3389/fmicb.2015.00188.

Houldcroft, CJ; Breuer, J; Bryant, J; Depledge, D; Margetts, B; Simmonds, J; Nicolaou, S; ... PATHSEEK, .; + view all Houldcroft, CJ; Breuer, J; Bryant, J; Depledge, D; Margetts, B; Simmonds, J; Nicolaou, S; Tutill, H; Williams, R; Worth, A; Marks, S; Veys, P; Whitttaker, E; PATHSEEK, .; - view fewer (2016) Detection of low frequency multi-drug resistance and novel putative maribavir resistance in immunocompromised paediatric patients with cytomegalovirus. Frontiers in Microbiology , 7 , Article 1317. 10.3389/fmicb.2016.01317.

Houldcroft, CJ; Roy, S; Morfopoulou, S; Margetts, BK; Depledge, DP; Cudini, J; Shah, D; ... Breuer, J; + view all Houldcroft, CJ; Roy, S; Morfopoulou, S; Margetts, BK; Depledge, DP; Cudini, J; Shah, D; Brown, JR; Yara Romero, E; Williams, R; Cloutman-Green, E; Rao, K; Standing, JF; Hartley, J; Breuer, J; - view fewer (2018) Use of Whole-genome Sequencing of Adenovirus in Immunocompromised Paediatric Patients to Identify Nosocomial Transmission and Mixed-genotype Infection. The Journal of Infectious Diseases , 218 (8) pp. 1261-1271. 10.1093/infdis/jiy323.

Houlihan, CF; Bharucha, T; Breuer, J; (2019) Advances in molecular diagnostic testing for central nervous system infections. Current Opinion in Infectious Diseases , 32 (3) pp. 244-250. 10.1097/QCO.0000000000000548.

Hu, M; Depledge, DP; Flores Cortes, E; Breuer, J; Schang, LM; (2019) Chromatin dynamics and the transcriptional competence of HSV-1 genomes during lytic infections. PLoS Pathogens , 15 (11) , Article e1008076. 10.1371/journal.ppat.1008076.

Illingworth, Christopher JR; Guerra-Assuncao, Jose A; Gregg, Samuel; Charles, Oscar; Pang, Juanita; Roy, Sunando; Abdelnabi, Rana; ... Breuer, Judith; + view all Illingworth, Christopher JR; Guerra-Assuncao, Jose A; Gregg, Samuel; Charles, Oscar; Pang, Juanita; Roy, Sunando; Abdelnabi, Rana; Neyts, Johan; Breuer, Judith; - view fewer (2024) Genetic consequences of effective and suboptimal dosing with mutagenic drugs in a hamster model of SARS-CoV-2 infection. Virus Evolution , 10 (1) , Article veae001. 10.1093/ve/veae001.

Illingworth, CJR; Roy, S; Beale, MA; Tutill, H; Williams, R; Breuer, J; (2017) On the effective depth of viral sequence data. Virus Evolution , 3 (2) , Article vex030. 10.1093/ve/vex030.

Jackson, Susan; Marshall, Julia L; Mawer, Andrew; Lopez-Ramon, Raquel; Harris, Stephanie A; Satti, Iman; Hughes, Eileen; ... COV-CHIM01 study team; + view all Jackson, Susan; Marshall, Julia L; Mawer, Andrew; Lopez-Ramon, Raquel; Harris, Stephanie A; Satti, Iman; Hughes, Eileen; Preston-Jones, Hannah; Cabrera Puig, Ingrid; Longet, Stephanie; Tipton, Tom; Laidlaw, Stephen; Doherty, Rebecca Powell; Morrison, Hazel; Mitchell, Robert; Tanner, Rachel; Ateere, Alberta; Stylianou, Elena; Wu, Meng-San; Fredsgaard-Jones, Timothy PW; Breuer, Judith; Rapeport, Garth; Ferreira, Vanessa M; Gleeson, Fergus; Pollard, Andrew J; Carroll, Miles; Catchpole, Andrew; Chiu, Christopher; McShane, Helen; COV-CHIM01 study team; - view fewer (2024) Safety, tolerability, viral kinetics, and immune correlates of protection in healthy, seropositive UK adults inoculated with SARS-CoV-2: a single-centre, open-label, phase 1 controlled human infection study. The Lancet Microbe 10.1016/S2666-5247(24)00025-9. (In press).

Johnson, Sarah May; Hassell, Jane; Manning, Gerard Leslie Peter; Sudhakar, Sniya; Brierley, Joe; Grandjean, Louis; Breuer, Judith; Johnson, Sarah May; Hassell, Jane; Manning, Gerard Leslie Peter; Sudhakar, Sniya; Brierley, Joe; Grandjean, Louis; Breuer, Judith; Kadambari, Seilesh; - view fewer (2024) Acute Post‐Measles Encephalitis in a Returning Traveller: Highlighting the Need for MMR Vaccination. Reviews in Medical Virology , 34 (6) , Article e2588. 10.1002/rmv.2588.

Jones, J; Depledge, DP; Breuer, J; Ebert-Keel, K; Elliott, G; (2019) Genetic and phenotypic intrastrain variation in herpes simplex virus type 1 Glasgow strain 17 syn+-derived viruses. Journal of General Virology , 100 (12) pp. 1701-1713. 10.1099/jgv.0.001343.

Jones, M; Dry, IR; Frampton, D; Singh, M; Kanda, RK; Yee, MB; Kellam, P; ... Breuer, J; + view all Jones, M; Dry, IR; Frampton, D; Singh, M; Kanda, RK; Yee, MB; Kellam, P; Hollinshead, M; Kinchington, PR; O'Toole, EA; Breuer, J; - view fewer (2014) RNA-seq Analysis of Host and Viral Gene Expression Highlights Interaction between Varicella Zoster Virus and Keratinocyte Differentiation. PLoS Pathogens , 10 (1) , Article e1003896. 10.1371/journal.ppat.1003896.

Jones, TPW; Buckland, M; Breuer, J; Lowe, DM; (2019) Viral infection in primary antibody deficiency syndromes. Reviews in Medical Virology , 29 (4) , Article e2049. 10.1002/rmv.2049.

Kaptein, SJF; Jacobs, S; Langendries, L; Seldeslachts, L; Ter Horst, S; Liesenborghs, L; Hens, B; ... Delang, L; + view all Kaptein, SJF; Jacobs, S; Langendries, L; Seldeslachts, L; Ter Horst, S; Liesenborghs, L; Hens, B; Vergote, V; Heylen, E; Barthelemy, K; Maas, E; De Keyzer, C; Bervoets, L; Rymenants, J; Van Buyten, T; Zhang, X; Abdelnabi, R; Pang, J; Williams, R; Thibaut, HJ; Dallmeier, K; Boudewijns, R; Wouters, J; Augustijns, P; Verougstraete, N; Cawthorne, C; Breuer, J; Solas, C; Weynand, B; Annaert, P; Spriet, I; Vande Velde, G; Neyts, J; Rocha-Pereira, J; Delang, L; - view fewer (2020) Favipiravir at high doses has potent antiviral activity in SARS-CoV-2-infected hamsters, whereas hydroxychloroquine lacks activity. Proceedings of the National Academy of Sciences (PNAS) 10.1073/pnas.2014441117. (In press).

Kembou-Ringert, Japhette E; Readman, John; Smith, Claire M; Breuer, Judith; Standing, Joseph F; (2022) Applications of the hollow-fibre infection model (HFIM) in viral infection studies. Journal of Antimicrobial Chemotherapy 10.1093/jac/dkac394. (In press).

Kennedy, PGE; Montague, P; Scott, F; Grinfeld, E; Ashrafi, GH; Breuer, J; Rowan, EG; (2013) Varicella-Zoster Viruses Associated with Post-Herpetic Neuralgia Induce Sodium Current Density Increases in the ND7-23 Nav-1.8 Neuroblastoma Cell Line. PLoS ONE , 8 (1) , Article e51570. 10.1371/journal.pone.0051570.

Knight, Chanice; Andreani, Julien; Garrett, Neil; Winter, Mark; Golubchik, Tanya; Breuer, Judy; Reynolds, Claire; ... Simmonds, Peter; + view all Knight, Chanice; Andreani, Julien; Garrett, Neil; Winter, Mark; Golubchik, Tanya; Breuer, Judy; Reynolds, Claire; Brailsford, Susan R; Harvala, Heli; Simmonds, Peter; - view fewer (2023) Absence of detectable monkeypox virus DNA in 11,000 English blood donations during the 2022 outbreak. Transfusion , 63 (4) pp. 690-695. 10.1111/trf.17266.

Kreins, Alexandra Y; Roux, Emma; Pang, Juanita; Cheng, Iek; Charles, Oscar; Roy, Sunando; Mohammed, Reem; ... Breuer, Judith; + view all Kreins, Alexandra Y; Roux, Emma; Pang, Juanita; Cheng, Iek; Charles, Oscar; Roy, Sunando; Mohammed, Reem; Owens, Stephen; Lowe, David M; Brugha, Rossa; Williams, Rachel; Howley, Evey; Best, Timothy; Davies, E Graham; Worth, Austen; Solas, Caroline; Standing, Joseph F; Goldstein, Richard A; Rocha-Pereira, Joana; Breuer, Judith; - view fewer (2024) Favipiravir induces HuNoV viral mutagenesis and infectivity loss with clinical improvement in immunocompromised patients. Clinical Immunology , Article 109901. 10.1016/j.clim.2024.109901.

Lassalle, F; Beale, MA; Bharucha, T; Williams, CA; Williams, RJ; Cudini, J; Goldstein, R; ... Breuer, J; + view all Lassalle, F; Beale, MA; Bharucha, T; Williams, CA; Williams, RJ; Cudini, J; Goldstein, R; Haque, T; Depledge, DP; Breuer, J; - view fewer (2020) Whole genome sequencing of Herpes Simplex Virus 1 directly from human cerebrospinal fluid reveals selective constraints in neurotropic viruses. Virus Evolution , 6 (1) , Article veaa012. 10.1093/ve/veaa012.

Lassalle, F; Depledge, DP; Reeves, MB; Brown, AC; Christiansen, MT; Tutill, HJ; Williams, RJ; ... Breuer, J; + view all Lassalle, F; Depledge, DP; Reeves, MB; Brown, AC; Christiansen, MT; Tutill, HJ; Williams, RJ; Einer-Jensen, K; Holdstock, J; Atkinson, C; Brown, JR; van Loenen, FB; Clark, DA; Griffiths, PD; Verjans, GMGM; Schutten, M; Milne, RSB; Balloux, F; Breuer, J; - view fewer (2016) Islands of linkage in an ocean of pervasive recombination reveals two-speed evolution of human cytomegalovirus genomes. Virus Evolution , 2 (1) , Article vew017. 10.1093/ve/vew017.

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Low, N; Unemo, M; Skov Jensen, J; Breuer, J; Stephenson, JM; (2014) Molecular Diagnostics for Gonorrhoea: Implications for Antimicrobial Resistance and the Threat of Untreatable Gonorrhoea. PLoS Med , 11 (2) , Article e1001598. 10.1371/journal.pmed.1001598.

Lum, SH; Turner, A; Guiver, M; Bonney, D; Martland, T; Davies, E; Newbould, M; ... Wynn, R; + view all Lum, SH; Turner, A; Guiver, M; Bonney, D; Martland, T; Davies, E; Newbould, M; Brown, J; Morfopoulou, S; Breuer, J; Wynn, R; - view fewer (2016) An emerging opportunistic infection: fatal astrovirus (VA1/HMO-C) encephalitis in a pediatric stem cell transplant recipient. Transplant Infectious Disease , 18 (6) pp. 960-964. 10.1111/tid.12607.

Lumby, CK; Zhao, L; Breuer, J; Illingworth, CJR; (2020) A large effective population size for established within-host influenza virus infection. eLife , 9 , Article e56915. 10.7554/eLife.56915.

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Manouchehrinia, A; Tanasescu, R; Kareem, H; Jerca, OP; Jabeen, F; Shafei, R; Breuer, J; ... Constantinescu, CS; + view all Manouchehrinia, A; Tanasescu, R; Kareem, H; Jerca, OP; Jabeen, F; Shafei, R; Breuer, J; Neal, K; Irving, W; Constantinescu, CS; - view fewer (2017) Prevalence of a history of prior varicella/herpes zoster infection in multiple sclerosis. Journal of NeuroVirology , 23 (6) pp. 839-844. 10.1007/s13365-017-0569-1.

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Meyts, I; Bucciol, G; Jansen, K; Wollants, E; Breuer, J; (2023) Aichivirus: an Emerging Pathogen in Patients with Primary and Secondary B-Cell Deficiency. Journal of Clinical Immunology , 43 pp. 532-535. 10.1007/s10875-022-01410-6.

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Nimmo, C; Brien, K; Millard, J; Grant, AD; Padayatchi, N; Pym, AS; O'Donnell, M; ... Balloux, F; + view all Nimmo, C; Brien, K; Millard, J; Grant, AD; Padayatchi, N; Pym, AS; O'Donnell, M; Goldstein, R; Breuer, J; Balloux, F; - view fewer (2020) Dynamics of within-host Mycobacterium tuberculosis diversity and heteroresistance during treatment. EBioMedicine , 55 , Article 102747. 10.1016/j.ebiom.2020.102747.

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Ouwendijk, WJD; Depledge, DP; Rajbhandari, L; Lenac Rovis, T; Jonjic, S; Breuer, J; Venkatesan, A; ... Sadaoka, T; + view all Ouwendijk, WJD; Depledge, DP; Rajbhandari, L; Lenac Rovis, T; Jonjic, S; Breuer, J; Venkatesan, A; Verjans, GMGM; Sadaoka, T; - view fewer (2020) Varicella-zoster virus VLT-ORF63 fusion transcript induces broad viral gene expression during reactivation from neuronal latency. Nature Communications , 11 (1) , Article 6324. 10.1038/s41467-020-20031-4.

Pang, J; Slyker, JA; Roy, S; Bryant, J; Atkinson, C; Cudini, J; Farquhar, C; ... Breuer, J; + view all Pang, J; Slyker, JA; Roy, S; Bryant, J; Atkinson, C; Cudini, J; Farquhar, C; Griffiths, P; Kiarie, J; Morfopoulou, S; Roxby, AC; Tutil, H; Williams, R; Gantt, S; Goldstein, RA; Breuer, J; - view fewer (2020) Mixed cytomegalovirus genotypes in HIV positive mothers show compartmentalization and distinct patterns of transmission to infants. Elife , 9 , Article e63199. 10.7554/eLife.63199. (In press).

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Peters, RPH; Doyle, R; Redelinghuys, MJ; McIntyre, JA; Verjans, GM; Breuer, J; Kock, MM; (2017) Chlamydia trachomatis Biovar L2 Infection in Women in South Africa. Emerg Infect Dis , 23 (11) pp. 1913-1915. 10.3201/eid2311.170758.

Pheasant, K; Moller-Levet, CS; Jones, J; Depledge, D; Breuer, J; Elliott, G; (2019) Nuclear-cytoplasmic compartmentalization of the herpes simplex virus 1 infected cell transcriptome is co-ordinated by the viral endoribonuclease vhs and cofactors to facilitate the translation of late proteins. PLoS Pathogens , 14 (11) , Article e1007331. 10.1371/journal.ppat.1007331. (In press).

Pickering, H; Chernet, A; Sata, E; Zerihun, M; Williams, CA; Breuer, J; Nute, AW; ... Nash, SD; + view all Pickering, H; Chernet, A; Sata, E; Zerihun, M; Williams, CA; Breuer, J; Nute, AW; Haile, M; Zeru, T; Tadesse, Z; Bailey, RL; Callahan, EK; Holland, MJ; Nash, SD; - view fewer (2020) Genomics of Ocular Chlamydia trachomatis after 5 years of SAFE interventions for trachoma in Amhara, Ethiopia. The Journal of Infectious Diseases 10.1093/infdis/jiaa615. (In press).

Pitt, Rachel; Doyle, Ronan; Theilgaard Christiansen, Mette; Horner, Paddy; Hathorn, Emma; Alexander, Sarah; Woodford, Neil; ... Breuer, Judith; + view all Pitt, Rachel; Doyle, Ronan; Theilgaard Christiansen, Mette; Horner, Paddy; Hathorn, Emma; Alexander, Sarah; Woodford, Neil; Cole, Michelle; Breuer, Judith; - view fewer (2022) Whole-genome sequencing of Chlamydia trachomatis isolates from persistently infected patients. International Journal of STD and AIDS 10.1177/09564624211048662. (In press).

Roy, S; Hartley, J; Dunn, H; Williams, R; Williams, CA; Breuer, J; (2019) Whole-genome Sequencing Provides Data for Stratifying Infection Prevention and Control Management of Nosocomial Influenza A. Clinical Infectious Diseases 10.1093/cid/ciz020. (In press).

Rueeger, Sina; Hammer, Christian; Loetscher, Alexis; McLaren, Paul J; Lawless, Dylan; Naret, Olivier; Depledge, Daniel P; ... Fellay, Jacques; + view all Rueeger, Sina; Hammer, Christian; Loetscher, Alexis; McLaren, Paul J; Lawless, Dylan; Naret, Olivier; Depledge, Daniel P; Morfopoulou, Sofia; Breuer, Judith; Zdobnov, Evgeny; Fellay, Jacques; - view fewer (2021) The influence of human genetic variation on Epstein–Barr virus sequence diversity. Scientific Reports , 11 , Article 4586. 10.1038/s41598-021-84070-7.

Ruis, C; Brown, L-AK; Roy, S; Atkinson, C; Williams, R; Burns, SO; Yara-Romero, E; ... Lowe, DM; + view all Ruis, C; Brown, L-AK; Roy, S; Atkinson, C; Williams, R; Burns, SO; Yara-Romero, E; Jacobs, M; Goldstein, R; Breuer, J; Lowe, DM; - view fewer (2018) Mutagenesis in Norovirus in Response to Favipiravir Treatment. New England Journal of Medicine , 379 (22) pp. 2173-2176. 10.1056/NEJMc1806941.

Ruis, C; Roy, S; Brown, JR; Allen, DJ; Goldstein, RA; Breuer, J; (2017) The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is circulating worldwide, arose by late-2014 and contains polymerase changes that may increase virus transmission. PLoS ONE , 12 (6) , Article e0179572. 10.1371/journal.pone.0179572.

Sadaoka, Tomohiko; Depledge, Daniel P; Rajbhandari, Labchan; Breuer, Judith; Venkatesan, Arun; Cohen, Jeffrey; (2022) A Variant Allele in Varicella-Zoster Virus Glycoprotein B Selected during Production of the Varicella Vaccine Contributes to Its Attenuation. Genetics and Molecular Biology , 13 (4) pp. 1-19. 10.1128/mbio.01864-22.

Sadaoka, T; Depledge, DP; Rajbhandari, L; Venkatesan, A; Breuer, J; Cohen, JI; (2016) In vitro system using human neurons demonstrates that varicella-zoster vaccine virus is impaired for reactivation, but not latency. Proceedings Of The National Academy Of Sciences Of The United States Of America , 113 (17) E2403-E2412. 10.1073/pnas.1522575113.

Sanchez Clemente, Nuria; Penner, Justin; Breuer, Judith; Ip, Winnie; Booth, Claire; (2022) Case Report: A Severe Paediatric Presentation of COVID-19 in APDS2 Immunodeficiency. Frontiers in Immunology , 13 , Article 881259. 10.3389/fimmu.2022.881259.

Schneider-Hohendorf, T; Mohan, H; Bien, CG; Breuer, J; Becker, A; Görlich, D; Kuhlmann, T; ... Schwab, N; + view all Schneider-Hohendorf, T; Mohan, H; Bien, CG; Breuer, J; Becker, A; Görlich, D; Kuhlmann, T; Widman, G; Herich, S; Elpers, C; Melzer, N; Dornmair, K; Kurlemann, G; Wiendl, H; Schwab, N; - view fewer (2016) CD8(+) T-cell pathogenicity in Rasmussen encephalitis elucidated by large-scale T-cell receptor sequencing. Nature Communications , 7 , Article 11153. 10.1038/ncomms11153.

Shah, D; Brown, JR; Lee, JCD; Carpenter, ML; Wall, G; Breuer, J; (2022) Use of a sample-to-result shotgun metagenomics platform for the detection and quantification of viral pathogens in paediatric immunocompromised patients. Journal of Clinical Virology Plus , 2 (2) , Article 100073. 10.1016/j.jcvp.2022.100073. (In press).

Standing, Joseph F; Buggiotti, Laura; Guerra-Assuncao, Jose Afonso; Woodall, Maximillian; Ellis, Samuel; Agyeman, Akosua A; Miller, Charles; ... PANORAMIC Virology Group; + view all Standing, Joseph F; Buggiotti, Laura; Guerra-Assuncao, Jose Afonso; Woodall, Maximillian; Ellis, Samuel; Agyeman, Akosua A; Miller, Charles; Okechukwu, Mercy; Kirkpatrick, Emily; Jacobs, Amy I; Williams, Charlotte A; Roy, Sunando; Martin-Bernal, Luz M; Williams, Rachel; Smith, Claire M; Sanderson, Theo; Ashford, Fiona B; Emmanuel, Beena; Afzal, Zaheer M; Shields, Adrian; Richter, Alex G; Dorward, Jienchi; Gbinigie, Oghenekome; Van Hecke, Oliver; Lown, Mark; Francis, Nick; Jani, Bhautesh; Richards, Duncan B; Rahman, Najib M; Yu, Ly-Mee; Thomas, Nicholas PB; Hart, Nigel D; Evans, Philip; Andersson, Monique; Hayward, Gail; Hood, Kerenza; Nguyen-Van-Tam, Jonathan S; Little, Paul; Hobbs, FD Richard; Khoo, Saye; Butler, Christopher; Lowe, David M; Breuer, Judith; PANORAMIC Virology Group; - view fewer (2024) Randomized controlled trial of molnupiravir SARS-CoV-2 viral and antibody response in at-risk adult outpatients. Nature Communications , 15 , Article 1652. 10.1038/s41467-024-45641-0.

Stirrup, O; Boshier, F; Venturini, C; Guerra-Assunção, JA; Alcolea-Medina, A; Beckett, A; Charalampous, T; ... Breuer, J; + view all Stirrup, O; Boshier, F; Venturini, C; Guerra-Assunção, JA; Alcolea-Medina, A; Beckett, A; Charalampous, T; da Silva Filipe, A; Glaysher, S; Khan, T; Kulasegaran Shylini, R; Kele, B; Monahan, I; Mollett, G; Parker, M; Pelosi, E; Randell, P; Roy, S; Taylor, J; Weller, S; Wilson-Davies, E; Wade, P; Williams, R; Copas, A; Cutino-Moguel, M-T; Freemantle, N; Hayward, AC; Holmes, A; Hughes, J; Mahungu, T; Nebbia, G; Partridge, D; Pope, C; Price, J; Robson, S; Saeed, K; de Silva, T; Snell, L; Thomson, E; Witney, AA; Breuer, J; - view fewer (2021) SARS-CoV-2 lineage B.1.1.7 is associated with greater disease severity among hospitalised women but not men: multicentre cohort study. BMJ Open Respiratory Research , 8 (1) , Article e001029. 10.1136/bmjresp-2021-001029.

Stirrup, Oliver; Blackstone, James; Mapp, Fiona; MacNeil, Alyson; Panca, Monica; Holmes, Alison; Machin, Nicholas; ... Breuer, Judith; + view all Stirrup, Oliver; Blackstone, James; Mapp, Fiona; MacNeil, Alyson; Panca, Monica; Holmes, Alison; Machin, Nicholas; Shin, Gee Yen; Mahungu, Tabitha; Saeed, Kordo; Saluja, Tranprit; Taha, Yusri; Mahida, Nikunj; Pope, Cassie; Chawla, Anu; Cutino-Moguel, Maria-Teresa; Tamuri, Asif; Williams, Rachel; Darby, Alistair; Robertson, David L; Flaviani, Flavia; Nastouli, Eleni; Robson, Samuel; Smith, Darren; Laing, Kenneth; Monahan, Irene; Kele, Beatrix; Haldenby, Sam; George, Ryan; Bashton, Matthew; Witney, Adam A; Byott, Matthew; Coll, Francesc; Chapman, Michael; Peacock, Sharon J; Hughes, Joseph; Nebbia, Gaia; Partridge, David G; Parker, Matthew; Price, James Richard; Peters, Christine; Roy, Sunando; Snell, Luke B; de Silva, Thushan I; Thomson, Emma; Flowers, Paul; Copas, Andrew; Breuer, Judith; - view fewer (2022) Effectiveness of rapid SARS-CoV-2 genome sequencing in supporting infection control for hospital-onset COVID-19 infection: multicenter, prospective study. eLife , 11 10.7554/elife.78427. (In press).

Stirrup, O; Hughes, J; Parker, M; Partridge, DG; Shepherd, JG; Blackstone, J; Coll, F; ... Breuer, J; + view all Stirrup, O; Hughes, J; Parker, M; Partridge, DG; Shepherd, JG; Blackstone, J; Coll, F; Keeley, A; Lindsey, BB; Marek, A; Peters, C; Singer, JB; COVID-19 Genomics UK (COG-UK) consortium, .; Tamuri, A; de Silva, TI; Thomson, EC; Breuer, J; - view fewer (2021) Rapid feedback on hospital onset SARS-CoV-2 infections combining epidemiological and sequencing data. e-Life , 10 10.7554/eLife.65828. (In press).

Storey, Nathaniel; Brown, Julianne R; Pereira, Rui PA; O'Sullivan, Denise M; Huggett, Jim F; Williams, Rachel; Breuer, Judith; Storey, Nathaniel; Brown, Julianne R; Pereira, Rui PA; O'Sullivan, Denise M; Huggett, Jim F; Williams, Rachel; Breuer, Judith; Harris, Kathryn A; - view fewer (2021) Single base mutations in the nucleocapsid gene of SARS-CoV-2 affects amplification efficiency of sequence variants and may lead to assay failure. Journal of Clinical Virology Plus , 1 (3) , Article 100037. 10.1016/j.jcvp.2021.100037.

Thomson, E; Ip, CLC; Badhan, A; Christiansen, MT; Adamson, W; Ansari, MA; Bibby, D; ... Simmonds, P; + view all Thomson, E; Ip, CLC; Badhan, A; Christiansen, MT; Adamson, W; Ansari, MA; Bibby, D; Breuer, J; Brown, A; Bowden, R; Bryant, J; Bonsall, D; Filipe, ADS; Hinds, C; Hudson, E; Klenerman, P; Lythgow, K; Mbisa, JL; McLauchlan, J; Myers, R; Piazza, P; Roy, S; Trebes, A; Sreenu, VB; Witteveldt, J; Barnes, E; Simmonds, P; - view fewer (2016) Comparison of Next-Generation Sequencing Technologies for Comprehensive Assessment of Full-Length Hepatitis C Viral Genomes. Journal Of Clinical Microbiology , 54 (10) pp. 2470-2484. 10.1128/JCM.00330-16.

Tommasi, C; Breuer, J; (2022) The Biology of Varicella-Zoster Virus Replication in the Skin. Viruses , 14 (5) , Article 982. 10.3390/v14050982.

Torres Montaguth, Oscar Enrique; Buddle, Sarah; Morfopoulou, Sofia; Breuer, Judith; (2025) Clinical metagenomics for diagnosis and surveillance of viral pathogens. Nature Reviews Microbiology 10.1038/s41579-025-01223-5. (In press).

Tunnicliffe, Louis; Weil, Rimona S; Breuer, Judith; Rodriguez-Barradas, Maria C; Smeeth, Liam; Rentsch, Christopher T; Warren-Gash, Charlotte; (2024) Herpes Zoster and Risk of Incident Parkinson's Disease in US Veterans: A Matched Cohort Study. Movement Disorders 10.1002/mds.29701. (In press).

Vandenberg, O; Kozlakidis, Z; Schrenzel, J; Struelens, MJ; Breuer, J; (2018) Control of Infectious Diseases in the Era of European Clinical Microbiology Laboratory Consolidation: New Challenges and Opportunities for the Patient and for Public Health Surveillance. Frontiers in Medicine , 5 , Article 15. 10.3389/fmed.2018.00015.

Venturini, C; Houldcroft, CJ; Lazareva, A; Wegner, F; Morfopoulou, S; Amrolia, PJ; Golwala, Z; ... Breuer, J; + view all Venturini, C; Houldcroft, CJ; Lazareva, A; Wegner, F; Morfopoulou, S; Amrolia, PJ; Golwala, Z; Rao, A; Marks, SD; Simmonds, J; Yoshikawa, T; Farrell, PJ; Cohen, J; Worth, AJ; Breuer, J; - view fewer (2021) Epstein-Barr virus (EBV) deletions as biomarkers of response to treatment of chronic active EBV. British Journal of Haematology 10.1111/bjh.17790. (In press).

Venturini, Cristina; Colston, Julia M; Charles, Oscar; Lankina, Anastasia; Best, Timothy; Atkinson, Claire; Forrest, Calum; ... Breuer, Judith; + view all Venturini, Cristina; Colston, Julia M; Charles, Oscar; Lankina, Anastasia; Best, Timothy; Atkinson, Claire; Forrest, Calum; Williams, Charlotte A; Rao, Kanchan; Worth, Austen; Thorburn, Doug; Harber, Mark; Griffiths, Paul; Breuer, Judith; - view fewer (2024) Persistent Low-Level Variants in a Subset of Viral Genes Are Highly Predictive of Poor Outcome in Immunocompromised Patients With Cytomegalovirus Infection. The Journal of Infectious Diseases 10.1093/infdis/jiae001. (In press).

Warren-Gash, C; Williamson, E; Shiekh, SI; Borjas-Howard, J; Pearce, N; Breuer, JM; Smeeth, L; (2022) No evidence that herpes zoster is associated with increased risk of dementia diagnosis. Annals of Clinical and Translational Neurology 10.1002/acn3.51525. (In press).

Warren-Gash, C; Breuer, J; (2019) Herpes zoster in people who are immunocompromised: what are the options for prevention? Lancet Infectious Diseases , 19 (9) pp. 922-924. 10.1016/S1473-3099(19)30399-8.

Warren-Gash, C; Breuer, J; (2016) A new herpes zoster subunit vaccine for older adults. Nature Reviews Neurology , 12 (12) pp. 682-683. 10.1038/nrneurol.2016.168.

Warren-Gash, C; Forbes, H; Breuer, J; (2017) Varicella and herpes zoster vaccine development: lessons learned. Expert Rev Vaccines , 16 (12) pp. 1191-1201. 10.1080/14760584.2017.1394843.

Warren-Gash, C; Forbes, H; Breuer, J; Hayward, AC; Mavrodaris, A; Ridha, BH; Rossor, M; ... Smeeth, L; + view all Warren-Gash, C; Forbes, H; Breuer, J; Hayward, AC; Mavrodaris, A; Ridha, BH; Rossor, M; Thomas, SL; Smeeth, L; - view fewer (2017) Association between human herpesvirus infections and dementia or mild cognitive impairment: a systematic review protocol. BMJ Open , 7 (6) , Article e016522. 10.1136/bmjopen-2017-016522.

Warren-Gash, C; Forbes, H; Maple, P; Quinlivan, M; Breuer, J; (2018) Viral load and antibody boosting following herpes zoster diagnosis. Journal of Clinical Virology , 103 pp. 12-15. 10.1016/j.jcv.2018.03.010.

Warren-Gash, C; Forbes, HJ; Williamson, E; Breuer, J; Hayward, AC; Mavrodaris, A; Ridha, BH; ... Smeeth, L; + view all Warren-Gash, C; Forbes, HJ; Williamson, E; Breuer, J; Hayward, AC; Mavrodaris, A; Ridha, BH; Rossor, MN; Thomas, SL; Smeeth, L; - view fewer (2019) Human herpesvirus infections and dementia or mild cognitive impairment: a systematic review and meta-analysis. Scientific Reports , 9 (1) , Article 4743. 10.1038/s41598-019-41218-w.

Watson, SJ; Welkers, MR; Depledge, DP; Coulter, E; Breuer, JM; de Jong, MD; Kellam, P; (2013) Viral population analysis and minority-variant detection using short read next-generation sequencing. Philosophical transactions of the Royal Society of London. Series B, Biological sciences , 368 (1614) , Article 20120205. 10.1098/rstb.2012.0205.

Wegner, F; Lassalle, F; Depledge, DP; Balloux, F; Breuer, J; (2019) Co-evolution of sites under immune selection shapes Epstein-Barr Virus population structure. Molecular Biology and Evolution 10.1093/molbev/msz152. (In press).

Weinert, LA; Depledge, DP; Kundu, S; Gershon, AA; Nichols, RA; Balloux, F; Welch, JJ; Weinert, LA; Depledge, DP; Kundu, S; Gershon, AA; Nichols, RA; Balloux, F; Welch, JJ; Breuer, J; - view fewer (2015) Rates of vaccine evolution show strong effects of latency: implications for varicella zoster virus epidemiology. Molecular Biology and Evolution , 32 (4) 1020 - 1028. 10.1093/molbev/msu406.

Werner, RN; Nikkels, AF; Marinovic, B; Schaefer, M; Czarnecka-Operacz, M; Agius, AM; Bata-Csorgo, Z; ... Nast, A; + view all Werner, RN; Nikkels, AF; Marinovic, B; Schaefer, M; Czarnecka-Operacz, M; Agius, AM; Bata-Csorgo, Z; Breuer, J; Girolomoni, G; Gross, GE; Langan, S; Lapid-Gortzak, R; Lesser, TH; Pleyer, U; Sellner, J; Verjans, GM; Wutzler, P; Dressler, C; Erdmann, R; Rosumeck, S; Nast, A; - view fewer (2016) European consensus-based (S2k) Guideline on the Management of Herpes Zoster - guided by the European Dermatology Forum (EDF) in cooperation with the European Academy of Dermatology and Venereology (EADV), Part 1: Diagnosis. Journal of the European Academy of Dermatology and Venereology , 31 (1) pp. 9-19. 10.1111/jdv.13995.

Werner, RN; Nikkels, AF; MarinoviC, B; Schaefer, M; Czarnecka-Operacz, M; Agius, AM; Bata-Csorgo, Z; ... Nast, A; + view all Werner, RN; Nikkels, AF; MarinoviC, B; Schaefer, M; Czarnecka-Operacz, M; Agius, AM; Bata-Csorgo, Z; Breuer, J; Girolomoni, G; Gross, GE; Langan, S; Lapid-Gortzak, R; Lesser, TH; Pleyer, U; Sellner, J; Verjans, GM; Wutzler, P; Dressler, C; Erdmann, R; Rosumeck, S; Nast, A; - view fewer (2016) European consensus-based (S2k) Guideline on the Management of Herpes Zoster - guided by the European Dermatology Forum (EDF) in cooperation with the European Academy of Dermatology and Venereology (EADV), Part 2: Treatment. Journal of the European Academy of Dermatology and Venereology , 31 (1) pp. 20-29. 10.1111/jdv.13957.

Wilkinson, SAJ; Sparks, N; Kele, B; Peacock, TP; Robson, SC; Connor, TR; Loman, NJ; ... Aigrain, L; + view all Wilkinson, SAJ; Sparks, N; Kele, B; Peacock, TP; Robson, SC; Connor, TR; Loman, NJ; Golubchik, T; Martinez Nunez, RT; Bonsall, D; Rambaut, A; Snell, LB; Livett, R; Ludden, C; Corden, S; Nastouli, E; Nebbia, G; Johnston, I; Lythgoe, K; Estee Torok, M; Goodfellow, IG; Prieto, JA; Saeed, K; Jackson, DK; Houlihan, C; Frampton, D; Hamilton, WL; Witney, AA; Bucca, G; Pope, CF; Moore, C; Thomson, EC; Harrison, EM; Smith, CP; Rogan, F; Beckwith, SM; Murray, A; Singleton, D; Eastick, K; Sheridan, LA; Randell, P; Jackson, LM; Ariani, CV; Gonçalves, S; Fairley, DJ; Loose, MW; Watkins, J; Moses, S; Nicholls, S; Bull, M; Amato, R; Smith, DL; Aanensen, DM; Barrett, JC; Aggarwal, D; Shepherd, JG; Curran, MD; Parmar, S; Parker, MD; Williams, C; Glaysher, S; Underwood, AP; Bashton, M; Pacchiarini, N; Loveson, KF; Byott, M; Carabelli, AM; Templeton, KE; de Silva, TI; Wang, D; Langford, CF; Sillitoe, J; Gunson, RN; Cottrell, S; O’Grady, J; Kwiatkowski, D; Lillie, PJ; Cortes, N; Moore, N; Thomas, C; Burns, PJ; Mahungu, TW; Liggett, S; Beckett, AH; Holden, MTG; Levett, LJ; Osman, H; Hassan-Ibrahim, MO; Simpson, DA; Chand, M; Gupta, RK; Darby, AC; Paterson, S; Pybus, OG; Volz, EM; de Angelis, D; Robertson, DL; Page, AJ; Martincorena, I; Aigrain, L; - view fewer (2022) Recurrent SARS-CoV-2 mutations in immunodeficient patients. Virus Evolution , 8 (2) 10.1093/ve/veac050.

Woodall, Maximillian; Ellis, Samuel; Zhang, Shengyuan; Kembou-Ringert, Japhette; Kite, Kerry-Anne; Buggiotti, Laura; Jacobs, Amy I; ... Smith, Claire M; + view all Woodall, Maximillian; Ellis, Samuel; Zhang, Shengyuan; Kembou-Ringert, Japhette; Kite, Kerry-Anne; Buggiotti, Laura; Jacobs, Amy I; Agyeman, Akosua Adom; Masonou, Tereza; Palor, Machaela; Mchugh, Timothy D; Breuer, Judith; Standing, Joseph F; Smith, Claire M; - view fewer (2025) Efficient in vitro assay for evaluating drug efficacy and synergy against emerging SARS-CoV-2 strains. Antimicrobial Agents and Chemotherapy , 69 (2) 10.1128/aac.01233-24.

Woodall, Maximillian NJ; Cujba, Ana-Maria; Worlock, Kaylee B; Case, Katie-Marie; Masonou, Tereza; Yoshida, Masahiro; Polanski, Krzysztof; ... Smith, Claire M; + view all Woodall, Maximillian NJ; Cujba, Ana-Maria; Worlock, Kaylee B; Case, Katie-Marie; Masonou, Tereza; Yoshida, Masahiro; Polanski, Krzysztof; Huang, Ni; Lindeboom, Rik GH; Mamanova, Lira; Bolt, Liam; Richardson, Laura; Cakir, Batuhan; Ellis, Samuel; Palor, Machaela; Burgoyne, Thomas; Pinto, Andreia; Moulding, Dale; Mchugh, Timothy D; Saleh, Aarash; Kilich, Eliz; Mehta, Puja; O'Callaghan, Chris; Zhou, Jie; Barclay, Wendy; De Coppi, Paolo; Butler, Colin R; Cortina-Borja, Mario; Vinette, Heloise; Roy, Sunando; Breuer, Judith; Chambers, Rachel C; Heywood, Wendy E; Mills, Kevin; Hynds, Robert E; Teichmann, Sarah A; Meyer, Kerstin B; Nikolic, Marko Z; Smith, Claire M; - view fewer (2024) Author Correction: Age-specific nasal epithelial responses to SARS-CoV-2 infection. Nature Microbiology , 9 (11) , Article 3076. 10.1038/s41564-024-01757-z.

Woodall, Maximillian NJ; Cujba, Ana-Maria; Worlock, Kaylee B; Case, Katie-Marie; Masonou, Tereza; Yoshida, Masahiro; Polanski, Krzysztof; ... Smith, Claire M; + view all Woodall, Maximillian NJ; Cujba, Ana-Maria; Worlock, Kaylee B; Case, Katie-Marie; Masonou, Tereza; Yoshida, Masahiro; Polanski, Krzysztof; Huang, Ni; Lindeboom, Rik GH; Mamanova, Lira; Bolt, Liam; Richardson, Laura; Cakir, Batuhan; Ellis, Samuel; Palor, Machaela; Burgoyne, Thomas; Pinto, Andreia; Moulding, Dale; McHugh, Timothy D; Saleh, Aarash; Kilich, Eliz; Mehta, Puja; O’Callaghan, Chris; Zhou, Jie; Barclay, Wendy; DeCoppi, Paolo; Butler, Colin R; Cortina-Borja, Mario; Vinette, Heloise; Roy, Sunando; Breuer, Judith; Chambers, Rachel C; Heywood, Wendy E; Mills, Kevin; Hynds, Robert E; Teichmann, Sarah A; Meyer, Kerstin B; Nikolić, Marko Z; Smith, Claire M; - view fewer (2024) Age-specific nasal epithelial responses to SARS-CoV-2 infection. Nature Microbiology 10.1038/s41564-024-01658-1. (In press).

Xavier Lopez-Labrador, F; Brown, JR; Fischer, N; Harvala, H; Van Boheemen, S; Cinek, O; Sayiner, A; ... de Vries, JJC; + view all Xavier Lopez-Labrador, F; Brown, JR; Fischer, N; Harvala, H; Van Boheemen, S; Cinek, O; Sayiner, A; Madsen, TV; Auvinen, E; Kufner, V; Huber, M; Rodriguez, C; Jonges, M; Hoenemann, M; Susi, P; Sousa, H; Klapper, PE; Perez-Cataluna, A; Hernandez, M; Molenkamp, R; van der Hoek, L; Schuurman, R; Couto, N; Leuzinger, K; Simmonds, P; Beer, M; Hoeper, D; Kamminga, S; Feltkamp, MCW; Rodriguez-Diaz, J; Keyaerts, E; Nielsen, XC; Puchhammer-Stockl, E; Kroes, ACM; Buesa, J; Breuer, J; Claas, ECJ; de Vries, JJC; - view fewer (2021) Recommendations for the introduction of metagenomic high-throughput sequencing in clinical virology, part I: Wet lab procedure. jJournal of Clinical Virology , 134 , Article 104691. 10.1016/j.jcv.2020.104691.

Working / discussion paper

Blackstone, J; Stirrup, O; Mapp, F; Panca, M; Copas, A; Flowers, P; Hockey, L; ... the COVID-19 Genomics UK (COG-UK) Consortium; + view all Blackstone, J; Stirrup, O; Mapp, F; Panca, M; Copas, A; Flowers, P; Hockey, L; Price, J; Partridge, D; Peters, C; de Silva, T; Nebbia, G; Snell, L; McComish, R; Breuer, J; the COVID-19 Genomics UK (COG-UK) Consortium; - view fewer (2021) Protocol for the COG-UK hospital onset COVID-19 infection (HOCI) multicentre interventional clinical study: evaluating the efficacy of rapid genome sequencing of SARS-CoV-2 in limiting the spread of COVID-19 in United Kingdom NHS hospitals. MedRxiv: Cold Spring Harbor, NY, USA.

Ortiz, Arturo Torres; Kendall, Michelle; Storey, Nathaniel; Hatcher, James; Dunn, Helen; Roy, Sunando; Williams, Rachel; ... Grandjean, Louis; + view all Ortiz, Arturo Torres; Kendall, Michelle; Storey, Nathaniel; Hatcher, James; Dunn, Helen; Roy, Sunando; Williams, Rachel; Williams, Charlotte; Goldstein, Richard A; Didelot, Xavier; Harris, Kathryn; Breuer, Judith; Grandjean, Louis; - view fewer (2022) Within-host diversity improves phylogenetic and transmission reconstruction of SARS-CoV-2 outbreaks. BioRxiv: Cold Spring Harbor, NY, USA.

Venturini, Cristina; Colston, Julia; Charles, Oscar; Best, Timothy; Atkinson, Claire; Forrest, Calum; Williams, Charlotte; ... Breuer, Judith; + view all Venturini, Cristina; Colston, Julia; Charles, Oscar; Best, Timothy; Atkinson, Claire; Forrest, Calum; Williams, Charlotte; Rao, Kanchan; Worth, Austen; Thorburn, Doug; Harber, Mark; Griffiths, Paul; Breuer, Judith; - view fewer (2022) Persistent low-level variants in a subset of HCMV genes are highly predictive of poor outcome in immunocompromised patients with cytomegalovirus infection. MedRxiv: Cold Spring Harbor, NY, USA.

Conference item

Higgins, Colin; Petrushkin, Harry; Solebo, Ameenat L; Moore, William; Boyle, Sheila; Arslan, Zainab; Stojanovic, Jelena; ... Marks, Stephen D; + view all Higgins, Colin; Petrushkin, Harry; Solebo, Ameenat L; Moore, William; Boyle, Sheila; Arslan, Zainab; Stojanovic, Jelena; Breuer, Judith; Marks, Stephen D; - view fewer (2023) Epstein-barr virus anterior uveitis in a paediatric kidney transplant recipient. Presented at: 55th ESPN Annual Meeting, Vilnius, Lithuania.

Lum, SH; Turner, A; Bonney, D; Guiver, M; Breuer, J; Wynn, R; (2016) An emerging opportunistic infection: fatal animal-astrovirus encephalitis in a paediatric stem cell transplant recipient. Presented at: 42nd Annual Meeting of the European Society for Blood and Marrow Transplantation, Valencia, Spain.

Thesis

Brown, JR; (2017) Next generation sequencing to understand norovirus in immunocompromised children. Doctoral thesis , UCL (University College London).

This list was generated on Sun Feb 1 07:17:58 2026 GMT.