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Article

Andrews, KA; Frost, C; Modat, M; Cardoso, MJ; Rowe, CC; Villemagne, V; Fox, NC; ... Schott, JM; + view all (2015) Acceleration of hippocampal atrophy rates in asymptomatic amyloidosis. Neurobiology of Aging , 39 pp. 99-107. 10.1016/j.neurobiolaging.2015.10.013. Green open access
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Andrews, KA; Modat, M; Macdonald, KE; Yeatman, T; Cardoso, MJ; Leung, KK; Barnes, J; ... Lifestyle Flagship Study of Ageing; + view all (2013) Atrophy rates in asymptomatic amyloidosis: implications for Alzheimer prevention trials. PLoS One , 8 (3) , Article e58816. 10.1371/journal.pone.0058816. Green open access
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Antonelli, M; Cardoso, MJ; Johnston, EW; Appayya, MB; Presles, B; Modat, M; Punwani, S; (2019) GAS: A genetic atlas selection strategy in multi-atlas segmentation framework. Medical Image Analysis , 52 pp. 97-108. 10.1016/j.media.2018.11.007. Green open access
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Bennett, OF; Kanber, B; Hoskote, C; Cardoso, MJ; Ourselin, S; Duncan, JS; Winston, GP; (2019) Learning to see the invisible: A data-driven approach to finding the underlying patterns of abnormality in visually normal brain magnetic resonance images in patients with temporal lobe epilepsy. Epilepsia 10.1111/epi.16380. (In press). Green open access
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Blaiotta, C; Cardoso, MJ; Ashburner, J; (2016) Variational inference for medical image segmentation. Computer Vision and Image Understanding , 151 pp. 14-28. 10.1016/j.cviu.2016.04.004. Green open access
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Blaiotta, C; Freund, P; Cardoso, MJ; Ashburner, J; (2017) Generative diffeomorphic modelling of large MRI data sets for probabilistic template construction. Neuroimage , 166 pp. 117-134. 10.1016/j.neuroimage.2017.10.060. Green open access
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Bocchetta, M; Cardoso, MJ; Cash, DM; Ourselin, S; Warren, JD; Rohrer, JD; (2016) Patterns of regional cerebellar atrophy in genetic frontotemporal dementia. NeuroImage: Clinical , 11 pp. 287-290. 10.1016/j.nicl.2016.02.008. Green open access
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Bocchetta, M; Gordon, E; Cardoso, MJ; Modat, M; Ourselin, S; Warren, J; Rohrer, J; (2018) Thalamic atrophy in frontotemporal dementia - not just a C9orf72 problem. NeuroImage: Clinical , 18 pp. 675-681. 10.1016/j.nicl.2018.02.019. Green open access
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Bocchetta, M; Gordon, E; Marshall, CR; Slattery, CF; Cardoso, MJ; Cash, DM; Espak, M; ... Rohrer, JD; + view all (2016) The habenula: an under-recognised area of importance in frontotemporal dementia? [Letter]. Journal of Neurology, Neurosurgery and Psychiatry , 87 (8) pp. 910-912. 10.1136/jnnp-2015-312067. Green open access
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Bocchetta, M; Iglesias, JE; Scelsi, M; Cash, D; Cardoso, MJ; Modat, M; Altmann, A; ... Rohrer, JD; + view all (2018) Hippocampal subfield volumetry: differential pattern of atrophy in different forms of genetic frontotemporal dementia. Journal of Alzheimer's Disease , 64 (2) pp. 497-504. 10.3233/JAD-180195. Green open access
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Bonkhoff, AK; Xu, T; Nelson, A; Gray, R; Jha, A; Cardoso, J; Ourselin, S; ... Nachev, P; + view all (2021) Reclassifying stroke lesion anatomy. Cortex 10.1016/j.cortex.2021.09.007. (In press). Green open access
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Brugulat-Serrat, A; Salvadó, G; Sudre, CH; Grau-Rivera, O; Suárez-Calvet, M; Falcon, C; Sánchez-Benavides, G; ... ALFA Study; + view all (2020) Patterns of white matter hyperintensities associated with cognition in middle-aged cognitively healthy individuals. Brain Imaging and Behavior , 14 pp. 2012-2023. 10.1007/s11682-019-00151-2. Green open access
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Burgos, N; Cardoso, MJ; Thielemans, K; Modat, M; Dickson, J; Schott, JM; Atkinson, D; ... Ourselin, S; + view all (2015) Multi-contrast attenuation map synthesis for PET/MR scanners: assessment on FDG and Florbetapir PET tracers. European Journal of Nuclear Medicine and Molecular Imaging , 42 (9) pp. 1447-1458. 10.1007/s00259-015-3082-x. Green open access
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Burgos, N; Cardoso, MJ; Thielemans, K; Modat, M; Pedemonte, S; Dickson, J; Barnes, A; ... Ourselin, S; + view all (2014) Attenuation correction synthesis for hybrid PET-MR scanners: application to brain studies. IEEE Trans Med Imaging , 33 (12) 2332 - 2341. 10.1109/TMI.2014.2340135. Green open access
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Burgos, N; Guerreiro, F; McClelland, J; Presles, B; Modat, M; Nill, S; Dearnaley, D; ... Cardoso, MJ; + view all (2017) Iterative framework for the joint segmentation and CT synthesis of MR images: application to MRI-only radiotherapy treatment planning. Physics in Medicine and Biology , 62 (11) , Article 4237. 10.1088/1361-6560/aa66bf. Green open access
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Canas, LS; Sudre, CH; De Vita, E; Nihat, A; Mok, TH; Slattery, CF; Paterson, RW; ... Modat, M; + view all (2019) Prion disease diagnosis using subject-specific imaging biomarkers within a multi-kernel Gaussian process. NeuroImage: Clinical , Article 102051. 10.1016/j.nicl.2019.102051. (In press). Green open access
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Carass, A; Roy, S; Jog, A; Cuzzocreo, JL; Magrath, E; Gherman, A; Button, J; ... Pham, DL; + view all (2017) Longitudinal multiple sclerosis lesion segmentation: resource & challenge. NeuroImage 10.1016/j.neuroimage.2016.12.064. (In press). Green open access
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Cardoso, MJ; Modat, M; Wolz, R; Melbourne, A; Cash, D; Rueckert, D; Ourselin, S; (2015) Geodesic Information Flows: Spatially-Variant Graphs and Their Application to Segmentation and Fusion. IEEE Transactions on Medical Imaging , 34 (9) pp. 1976-1988. 10.1109/TMI.2015.2418298. Green open access
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Cash, DM; Frost, C; Iheme, LO; Ünay, D; Kandemir, M; Fripp, J; Salvado, O; ... Ourselin, S; + view all (2015) Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge. Neuroimage , 123 pp. 149-164. 10.1016/j.neuroimage.2015.07.087. Green open access
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Chan, D; Binks, S; Nicholas, JM; Frost, C; Cardoso, MJ; Ourselin, S; Wilkie, D; ... Chataway, J; + view all (2017) Effect of high-dose simvastatin on cognitive, neuropsychiatric, and health-related quality-of-life measures in secondary progressive multiple sclerosis: secondary analyses from the MS-STAT randomised, placebo-controlled trial. The Lancet Neurology , 16 (8) pp. 591-600. 10.1016/S1474-4422(17)30113-8. Green open access
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Chung, KK; Altmann, D; Barkhof, F; Miszkiel, K; Brex, PA; O'Riordan, J; Ebner, M; ... Chard, DT; + view all (2020) A thirty year clinical and MRI observational study of multiple sclerosis and clinically isolated syndromes. Annals of Neurology , 87 (1) pp. 63-74. 10.1002/ana.25637. Green open access
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Clarkson, MJ; Cardoso, MJ; Ridgway, GR; Modat, M; Leung, KK; Rohrer, JD; Fox, NC; (2011) A comparison of voxel and surface based cortical thickness estimation methods. Neuroimage , 57 (3) pp. 856-865. 10.1016/j.neuroimage.2011.05.053. Green open access
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Convery, RS; Neason, MR; Cash, DM; Cardoso, MJ; Modat, M; Ourselin, S; Warren, JD; ... Bocchetta, M; + view all (2020) Basal forebrain atrophy in frontotemporal dementia. NeuroImage: Clinical , 26 , Article 102210. 10.1016/j.nicl.2020.102210. Green open access
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Cordeiro, MF; Normando, EM; Cardoso, MJ; Miodragovic, S; Jeylani, S; Davis, BM; Guo, L; ... Bloom, PA; + view all (2017) Real-time imaging of single neuronal cell apoptosis in patients with glaucoma. Brain , 140 (6) pp. 1757-1767. 10.1093/brain/awx088. Green open access
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Dingwall, N; Chalk, A; Martin, TI; Scott, CJ; Semedo, C; Le, Q; Orasanu, E; ... Ourselin, S; + view all (2016) T2 relaxometry in the extremely-preterm brain at adolescence. Magnetic Resonance Imaging , 34 (4) pp. 508-514. 10.1016/j.mri.2015.12.020. Green open access
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Dorent, R; Booth, T; Li, W; Sudre, CH; Kafiabadi, S; Cardoso, J; Ourselin, S; (2021) Learning joint segmentation of tissues and brain lesions from task-specific hetero-modal domain-shifted datasets. Medical Image Analysis , 67 , Article 101862. 10.1016/j.media.2020.101862. Green open access
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Drew, DA; Nguyen, LH; Steves, CJ; Menni, C; Freydin, M; Varsavsky, T; Sudre, CH; ... Chan, AT; + view all (2020) Rapid implementation of mobile technology for real-time epidemiology of COVID-19. Science , 368 (6497) pp. 1362-1367. 10.1126/science.abc0473. Green open access
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Eaton-Rosen, Z; Melbourne, A; Orasanu, E; Cardoso, MJ; Modat, M; Bainbridge, A; Kendall, GS; ... Ourselin, S; + view all (2015) Longitudinal measurement of the developing grey matter in preterm subjects using multi-modal MRI. Neuroimage , 111 580 - 589. 10.1016/j.neuroimage.2015.02.010. Green open access
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Ebner, M; Chung, K; Prados Carrasco, F; Cardoso, MJ; Chard, DT; Vercauteren, T; Ourselin, S; (2017) Volumetric reconstruction from printed films: Enabling 30 year longitudinal analysis in MR neuroimaging. NeuroImage 10.1016/j.neuroimage.2017.09.056. (In press). Green open access
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Eshaghi, A; Kievit, RA; Prados Carrasco, F; Sudre, C; Nicholas, J; Cardoso, MJ; Chan, D; ... Ciccarelli, O; + view all (2019) Applying causal models to explore the mechanism of action of simvastatin in progressive multiple sclerosis. Proceedings of the National Academy of Sciences of The United States of America (PNAS) , 116 (22) 10.1073/pnas.1818978116. Green open access
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Eshaghi, A; Marinescu, RV; Young, AL; Firth, NC; Prados Carrasco, F; Cardoso, MJ; Tur Gomez, C; ... MAGNIMS Study Group, .; + view all (2018) Progression of regional grey matter atrophy in multiple sclerosis. Brain , 141 (6) pp. 1665-1677. 10.1093/brain/awy088. Green open access
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Eshaghi, A; Prados Carrasco, F; Brownlee, W; Altmann, DR; Tur Gomez, C; Cardoso, MJ; de Angelis, F; ... Ciccarelli, O; + view all (2018) Deep grey matter volume loss drives disability worsening in multiple sclerosis. Annals of Neurology , 83 (2) pp. 210-222. 10.1002/ana.25145. Green open access
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Fiford, C; Sudre, C; Pemberton, H; Walsh, P; Manning, E; Malone, I; Nicholas, J; ... Barnes, J; + view all (2020) Automated white matter hyperintensity segmentation using Bayesian Model Selection: assessment and correlations with cognitive change. NeuroInformatics 10.1007/s12021-019-09439-6. (In press). Green open access
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Fiford, CM; Manning, EN; Bartlett, JW; Cash, DM; Malone, IB; Ridgway, GR; Lehmann, M; ... Alzheimer's Disease Neuroimaging Initiative; + view all (2017) White matter hyperintensities are associated with disproportionate progressive hippocampal atrophy. Hippocampus , 27 (3) pp. 249-262. 10.1002/hipo.22690. Green open access
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Fiford, CM; Ridgway, GR; Cash, DM; Modat, M; Nicholas, J; Manning, EN; Malone, IB; ... Alzheimer's Disease Neuroimaging Initiative, .; + view all (2018) Patterns of progressive atrophy vary with age in Alzheimer's disease patients. Neurobiology of Aging , 63 pp. 22-32. 10.1016/j.neurobiolaging.2017.11.002. Green open access
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Firth, NC; Primativo, S; Marinescu, R-V; Shakespeare, TJ; Suarez-Gonzalez, A; Lehmann, M; Carton, A; ... Crutch, SJ; + view all (2019) Longitudinal neuroanatomical and cognitive progression of posterior cortical atrophy. Brain , 142 (7) pp. 2082-2095. 10.1093/brain/awz136. Green open access
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Gibson, E; Li, W; Sudre, C; Fidon, L; Shakir, DI; Wang, G; Eaton-Rosen, Z; ... Vercauteren, T; + view all (2018) NiftyNet: a deep-learning platform for medical imaging. Computer Methods and Programs in Biomedicine , 158 pp. 113-122. 10.1016/j.cmpb.2018.01.025. Green open access
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Goodkin, O; Prados, F; Vos, SB; Pemberton, H; Collorone, S; Hagens, MHJ; Cardoso, MJ; ... Barkhof, F; + view all (2021) FLAIR-only joint volumetric analysis of brain lesions and atrophy in clinically isolated syndrome (CIS) suggestive of multiple sclerosis. NeuroImage: Clinical , 29 , Article 102542. 10.1016/j.nicl.2020.102542. Green open access
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Graham, Mark S; May, Anna; Varsavsky, Thomas; Sudre, Carole H; Murray, Benjamin; Kläser, Kerstin; Antonelli, Michela; ... Astley, Christina M; + view all (2022) Knowledge barriers in a national symptomatic-COVID-19 testing programme. PLoS Global Public Health , 2 (1) , Article e0000028. 10.1371/journal.pgph.0000028. Green open access
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Groot, C; Sudre, CH; Barkhof, F; Teunissen, CE; van Berckel, BNM; Seo, SW; Ourselin, S; ... Ossenkoppele, R; + view all (2018) Clinical Phenotype, Atrophy, and Small Vessel Disease in APOEε2 Carriers With Alzheimer Disease. Neurology 10.1212/WNL.0000000000006503. (In press).

Guerreiro, F; Burgos, N; Dunlop, A; Wong, K; Petkar, I; Nutting, C; Harrington, K; ... Knopf, AC; + view all (2017) Evaluation of a multi-atlas CT synthesis approach for MRI-only radiotherapy treatment planning. Physica Medica , 35 pp. 7-17. 10.1016/j.ejmp.2017.02.017. Green open access
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Haddow, L; Sudre, CH; Sokolska, M; Gilson, RC; Williams, I; Golay, X; Ourselin, S; ... Jäger, R; + view all (2019) Magnetic resonance imaging of cerebral small vessel disease in men living with HIV and HIV negative men aged 50 and above. AIDS Research and Human Retroviruses , 35 (5) pp. 453-460. 10.1089/AID.2018.0249. Green open access
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Harding, SR; Bocchetta, M; Gordon, E; Cash, DM; Cardoso, MJ; Druyeh, R; Ourselin, S; ... Rohrer, JD; + view all (2017) The TMEM106B risk allele is associated with lower cortical volumes in a clinically diagnosed frontotemporal dementia cohort. Journal of Neurology, Neurosurgery & Psychiatry , 88 pp. 997-998. 10.1136/jnnp-2017-315641. Green open access
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Hoang Duc, AK; Eminowicz, G; Mendes, R; Wong, SL; McClelland, J; Modat, M; Cardoso, MJ; ... Ourselin, S; + view all (2015) Validation of clinical acceptability of an atlas-based segmentation algorithm for the delineation of organs at risk in head and neck cancer. Medical Physics , 42 (9) pp. 5027-5034. 10.1118/1.4927567. Green open access
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Hoang Duc, AK; Modat, M; Leung, KK; Cardoso, MJ; Barnes, J; Kadir, T; Ourselin, S; (2013) Using manifold learning for atlas selection in multi-atlas segmentation. PLoS One , 8 (8) , Article e70059. 10.1371/journal.pone.0070059. Green open access
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Holmes, HE; Colgan, N; Ismail, O; Ma, D; Powell, NM; O'Callaghan, JM; Harrison, IF; ... Lythgoe, MF; + view all (2016) Imaging the accumulation and suppression of tau pathology using multiparametric MRI. Neurobiology of Aging , 39 pp. 184-194. 10.1016/j.neurobiolaging.2015.12.001. Green open access
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Holmes, HE; Powell, NM; Ma, D; Ismail, O; Harrison, IF; Wells, JA; Colgan, N; ... Lythgoe, MF; + view all (2017) Comparison of In Vivo and Ex Vivo MRI for the Detection of Structural Abnormalities in a Mouse Model of Tauopathy. Frontiers in Neuroinformatics , 11 , Article 20. 10.3389/fninf.2017.00020. Green open access
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Jorge Cardoso, M; Leung, K; Modat, M; Keihaninejad, S; Cash, D; Barnes, J; Fox, NC; ... Alzheimer’s Disease Neuroimaging Initiative; + view all (2013) STEPS: Similarity and Truth Estimation for Propagated Segmentations and its application to hippocampal segmentation and brain parcelation. Med Image Anal , 17 (6) 671 - 684. 10.1016/j.media.2013.02.006. Green open access
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Kanber, B; Ruffle, J; Cardoso, J; Ourselin, S; Ciccarelli, O; (2020) Neurosense: deep sensing of full or near-full coverage head/brain scans in human magnetic resonance imaging. Neuroinformatics , 18 pp. 333-336. 10.1007/s12021-019-09442-x. Green open access
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Kinnunen, KM; Cash, DM; Poole, T; Frost, C; Benzinger, TLS; Ahsan, RL; Leung, KK; ... Dominantly Inherited Alzheimer Network (DIAN), .; + view all (2017) Presymptomatic atrophy in autosomal dominant Alzheimer's disease: A serial MRI study. Alzheimer's & Dementia , 14 (1) pp. 43-53. 10.1016/j.jalz.2017.06.2268. Green open access
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Klaser, K; Borges, P; Shaw, R; Ranzini, M; Modat, M; Atkinson, D; Thielemans, K; ... Ourselin, S; + view all (2021) A Multi-Channel Uncertainty-Aware Multi-Resolution Network for MR to CT Synthesis. Applied Sciences , 11 (4) p. 1667. 10.3390/app11041667. Green open access
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Kochan, M; Daga, P; Burgos, N; White, M; Cardoso, MJ; Mancini, L; Winston, GP; ... Ourselin, S; + view all (2015) Simulated field maps for susceptibility artefact correction in interventional MRI. International Journal of Computer Assisted Radiology and Surgery , 10 (9) pp. 1405-1416. 10.1007/s11548-015-1253-7. Green open access
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Kuijf, HJ; Biesbroek, JM; de Bresser, J; Heinen, R; Andermatt, S; Bento, M; Berseth, M; ... Biessels, GJ; + view all (2019) Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities; Results of the WMH Segmentation Challenge. IEEE Transactions on Medical Imaging , 38 (11) pp. 2556-2568. 10.1109/TMI.2019.2905770. Green open access
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Ladefoged, CN; Law, I; Anazodo, U; St Lawrence, K; Izquierdo-Garcia, D; Catana, C; Burgos, N; ... Andersen, FL; + view all (2017) A multi-centre evaluation of eleven clinically feasible brain PET/MRI attenuation correction techniques using a large cohort of patients. NeuroImage , 147 pp. 346-359. 10.1016/j.neuroimage.2016.12.010. Green open access
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Lane, CA; Parker, TD; Cash, DM; Macpherson, K; Donnachie, E; Murray-Smith, H; Barnes, A; ... Schott, JM; + view all (2017) Study protocol: Insight 46 - a neuroscience sub-study of the MRC National Survey of Health and Development. BMC Neurology , 17 , Article 75. 10.1186/s12883-017-0846-x. Green open access
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Lehmann, M; Melbourne, A; Dickson, JC; Ahmed, RM; Modat, M; Cardoso, MJ; Thomas, DL; ... Schott, JM; + view all (2016) A novel use of arterial spin labelling MRI to demonstrate focal hypoperfusion in individuals with posterior cortical atrophy: a multimodal imaging study. Journal of Neurology, Neurosurgery and Psychiatry , 87 (9) pp. 1032-1034. 10.1136/jnnp-2015-312782. Green open access
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Leijenaar, JF; Groot, C; Sudre, CH; Bergeron, D; Leeuwis, AE; Cardoso, MJ; Carrasco, FP; ... Ossenkoppele, R; + view all (2020) Comorbid amyloid-β pathology affects clinical and imaging features in VCD. Alzheimer's & Dementia , 16 (2) pp. 354-364. 10.1016/j.jalz.2019.08.190. Green open access
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Liang, Y; Gordon, E; Rohrer, J; Downey, L; de Silva, R; Jäger, HR; Nicholas, J; ... Caine, D; + view all (2013) A cognitive chameleon: Lessons from a novel MAPT mutation case. Neurocase 10.1080/13554794.2013.826697. Green open access
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Lillington, J; Brusaferri, L; Kläser, K; Shmueli, K; Neji, R; Hutton, BF; Fraioli, F; ... Atkinson, D; + view all (2020) PET/MRI Attenuation Estimation in the Lung: A Review of Past, Present, and Potential Techniques. Medical Physics , 47 (2) pp. 790-811. 10.1002/mp.13943. Green open access
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Lorenzi, M; Simpson, IJ; Mendelson, AF; Vos, SB; Cardoso, MJ; Modat, M; Schott, JM; (2016) Multimodal Image Analysis in Alzheimer's Disease via Statistical Modelling of Non-local Intensity Correlations. Scientific Reports , 6 , Article 22161. 10.1038/srep22161. Green open access
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Ma, D; Cardoso, MJ; Modat, M; Powell, N; Wells, J; Holmes, H; Wiseman, F; ... Ourselin, S; + view all (2014) Automatic structural parcellation of mouse brain MRI using multi-atlas label fusion. PLoS One , 9 (1) , Article e86576. 10.1371/journal.pone.0086576. Green open access
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Ma, D; Cardoso, MJ; Zuluaga, MA; Modat, M; Powell, NM; Wiseman, FK; Cleary, JO; ... Ourselin, SE; + view all (2020) Substantially thinner internal granular layer and reduced molecular layer surface in the cerebellar cortex of the Tc1 mouse model of down syndrome – a comprehensive morphometric analysis with active staining contrast-enhanced MRI. NeuroImage , 223 , Article 117271. 10.1016/j.neuroimage.2020.117271. Green open access
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Ma, D; Holmes, HE; Cardoso, MJ; Modat, M; Harrison, IF; Powell, NM; O'Callaghan, JM; ... Ourselin, S; + view all (2019) Study the Longitudinal in vivo and Cross-Sectional ex vivo Brain Volume Difference for Disease Progression and Treatment Effect on Mouse Model of Tauopathy Using Automated MRI Structural Parcellation. Frontiers in Neuroscience , 13 , Article 11. 10.3389/fnins.2019.00011. Green open access
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Manning, EN; Leung, KK; Nicholas, JM; Malone, IB; Cardoso, MJ; Schott, JM; Fox, NC; (2017) A Comparison of Accelerated and Non-accelerated MRI Scans for Brain Volume and Boundary Shift Integral Measures of Volume Change: Evidence from the ADNI Dataset. NEUROINFORMATICS , 15 (2) pp. 215-226. 10.1007/s12021-017-9326-0. Green open access
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Manning, EN; Macdonald, KE; Leung, KK; Young, J; Pepple, T; Lehmann, M; Zuluaga, MA; ... Barnes, J; + view all (2015) Differential hippocampal shapes in posterior cortical atrophy patients: A comparison with control and typical AD subjects. Human Brain Mapping , 36 (12) pp. 5123-5136. 10.1002/hbm.22999. Green open access
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Markiewicz, P; Matthews, JC; Ashburner, J; Cash, D; Thomas, D; De Vita, E; Barnes, A; ... Barkhof, F; + view all (2021) Uncertainty analysis of MR-PET image registration for precision neuro-PET imaging. NeuroImage , 232 , Article 117821. 10.1016/j.neuroimage.2021.117821. Green open access
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Meeter, LH; Dopper, EG; Jiskoot, LC; Sanchez-Valle, R; Graff, C; Benussi, L; Ghidoni, R; ... van Swieten, JC; + view all (2016) Neurofilament light chain: a biomarker for genetic frontotemporal dementia. Annals of Clinical and Translational Neurology , 3 (8) pp. 623-636. 10.1002/acn3.325. Green open access
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Melbourne, A; Eaton-Rosen, Z; Orasanu, E; Price, D; Bainbridge, A; Cardoso, MJ; Kendall, GS; ... Ourselin, S; + view all (2016) Longitudinal development in the preterm thalamus and posterior white matter: MRI correlations between diffusion weighted imaging and T2 relaxometry. Human Brain Mapping , 37 (7) pp. 2479-2492. 10.1002/hbm.23188. Green open access
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Menni, C; Valdes, AM; Freidin, MB; Sudre, CH; Nguyen, LH; Drew, DA; Ganesh, S; ... Spector, TD; + view all (2020) Real-time tracking of self-reported symptoms to predict potential COVID-19. Nature Medicine , 26 pp. 1037-1040. 10.1038/s41591-020-0916-2. Green open access
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Moriconi, S; Rehwald, R; Zuluaga, MA; Jäger, HR; Nachev, P; Ourselin, S; Cardoso, MJ; (2019) Towards Quantifying Neurovascular Resilience. Lecture Notes in Computer Science , 11794 pp. 149-157. 10.1007/978-3-030-33327-0_18. Green open access
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Moriconi, S; Zuluaga, MA; Jager, HR; Nachev, P; Ourselin, S; Cardoso, MJ; (2019) Inference of Cerebrovascular Topology with Geodesic Minimum Spanning Trees. IEEE Transactions on Medical Imaging , 38 (1) pp. 225-239. 10.1109/TMI.2018.2860239. Green open access
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Nguyen, LH; Drew, DA; Graham, MS; Joshi, AD; Guo, C-G; Ma, W; Mehta, RS; ... COronavirus Pandemic Epidemiology Consortium; + view all (2020) Risk of COVID-19 among front-line health-care workers and the general community: a prospective cohort study. The Lancet Public Health , 5 (9) e475-e483. 10.1016/S2468-2667(20)30164-X. Green open access
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Niedworok, CJ; Brown, APY; Cardoso, MJ; Osten, P; Ourselin, S; Modat, M; Margrie, TW; (2016) aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data. NATURE COMMUNICATIONS , 7 , Article 11879. 10.1038/ncomms11879. Green open access
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Orasanu, E; Melbourne, A; Cardoso, MJ; Modat, M; Taylor, AM; Thayyil, S; Ourselin, S; (2014) Brain volume estimation from post-mortem newborn and fetal MRI. Neuroimage Clin , 6 438 - 444. 10.1016/j.nicl.2014.10.007. Green open access
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Orasanu, ET; Melbourne, A; Cardoso, MJ; Lomabert, H; Kendall, GS; Robertson, NJ; Marlow, N; (2016) Cortical folding of the preterm brain : a longitudinal analysis of extremely preterm born neonates using spectral matching. Brain and Behavior , 6 (8) , Article e00488. 10.1002/brb3.488. Green open access
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Pardini, M; Sudre, CH; Prados, F; Yaldizli, Ö; Sethi, V; Muhlert, N; Samson, RS; ... Chard, DT; + view all (2016) Relationship of grey and white matter abnormalities with distance from the surface of the brain in multiple sclerosis. Journal of Neurology, Neurosurgery and Psychiatry , 87 (11) pp. 1212-1217. 10.1136/jnnp-2016-313979. Green open access
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Parker, C; Clayden, J; Cardoso, M; Rodionov, R; Duncan, J; Scott, C; Diehl, B; (2018) Structural and effective connectivity in focal epilepsy. NeuroImage: Clinical , 17 pp. 943-952. 10.1016/j.nicl.2017.12.020. Green open access
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Parker, CS; Deligianni, F; Cardoso, MJ; Daga, P; Modat, M; Dayan, M; Clark, CA; ... Clayden, JD; + view all (2014) Consensus between pipelines in structural brain networks. PLoS One , 9 (10) , Article e111262. 10.1371/journal.pone.0111262. Green open access
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Pemberton, HG; Goodkin, O; Prados, F; Das, RK; Vos, SB; Moggridge, J; Coath, W; ... Alzheimer’s Disease Neuroimaging Initiative; + view all (2021) Automated quantitative MRI volumetry reports support diagnostic interpretation in dementia: a multi-rater, clinical accuracy study. European Radiology 10.1007/s00330-020-07455-8. (In press). Green open access
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Pinaya, Walter HL; Tudosiu, Petru-Daniel; Gray, Robert; Rees, Geraint; Nachev, Parashkev; Ourselin, Sebastien; Cardoso, M Jorge; (2022) Unsupervised brain imaging 3D anomaly detection and segmentation with transformers. Medical Image Analysis , 79 , Article 102475. 10.1016/j.media.2022.102475. Green open access
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Pinaya, WHL; Tudosiu, PD; Dafflon, J; Da Costa, PF; Fernandez, V; Nachev, P; Ourselin, S; (2022) Brain Imaging Generation with Latent Diffusion Models. Lecture Notes in Computer Science , 13609 pp. 117-126. 10.1007/978-3-031-18576-2_12. Green open access
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Pissas, T; Bloch, E; Cardoso, MJ; Flores, B; Georgiadis, O; Jalali, S; Ravasio, C; ... Bergeles, C; + view all (2020) Deep iterative vessel segmentation in OCT angiography. Biomedical Optics Express , 11 (5) pp. 2490-2510. 10.1364/BOE.384919. Green open access
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Powell, NM; Modat, M; Cardoso, MJ; Ma, D; Holmes, HE; Yu, Y; O'Callaghan, J; ... Ourselin, S; + view all (2016) Fully-Automated mu MRI Morphometric Phenotyping of the Tc1 Mouse Model of Down Syndrome. PLoS ONE , 11 (9) , Article e0162974. 10.1371/journal.pone.0162974. Green open access
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Prados, F; Cardoso, MJ; Kanber, B; Ciccarelli, O; Kapoor, R; Gandini Wheeler-Kingshott, CA; Ourselin, S; (2016) A multi-time-point modality-agnostic patch-based method for lesion filling in multiple sclerosis. Neuroimage , 139 pp. 376-384. 10.1016/j.neuroimage.2016.06.053. Green open access
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Prados, F; Cardoso, MJ; Leung, KK; Cash, DM; Modat, M; Fox, NC; Wheeler-Kingshott, CA; ... Alzheimer's Disease Neuroimaging Initiative, .; + view all (2015) Measuring brain atrophy with a generalized formulation of the boundary shift integral. Neurobiol Aging , 36 (1) S81 - S90. 10.1016/j.neurobiolaging.2014.04.035. Green open access
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Prados, F; Moccia, M; Johnson, A; Yiannakas, M; Grussu, F; Cardoso, MJ; Ciccarelli, O; ... Wheeler-Kingshott, C; + view all (2020) Generalised boundary shift integral for longitudinal assessment of spinal cord atrophy. Neuroimage , 209 , Article 116489. 10.1016/j.neuroimage.2019.116489. Green open access
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Prados Carrasco, F; Ashburner, J; Blaiotta, C; Brosch, T; Carballido-Gamio, J; Cardoso, MJ; Conrad, BN; ... Cohen-Adad, J; + view all (2017) Spinal cord grey matter segmentation challenge. Neuroimage , 152 pp. 312-329. 10.1016/j.neuroimage.2017.03.010. Green open access
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Prados Carrasco, F; Cardoso, MJ; Yiannakas, MC; Hoy, LR; Tebaldi, E; Kearney, H; Liechti, MD; ... Ourselin, S; + view all (2016) Fully automated grey and white matter spinal cord segmentation. Scientific Reports , 6 , Article 36151. 10.1038/srep36151. Green open access
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Premi, E; Grassi, M; van Swieten, J; Galimberti, D; Graff, C; Masellis, M; Tartaglia, C; ... Genetic FTD Initiative (GENFI), .; + view all (2017) Cognitive reserve and TMEM106B genotype modulate brain damage in presymptomatic frontotemporal dementia: a GENFI study. Brain , 140 (6) pp. 1784-1791. 10.1093/brain/awx103. Green open access
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Ranzini, MBM; Henckel, J; Ebner, M; Cardoso, MJ; Isaac, A; Vercauteren, T; Ourselin, S; ... Modat, M; + view all (2020) Automated postoperative muscle assessment of hip arthroplasty patients using multimodal imaging joint segmentation. Computer Methods and Programs in Biomedicine , 183 , Article 105062. 10.1016/j.cmpb.2019.105062. (In press). Green open access
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Rohrer, JD; Nicholas, JM; Cash, DM; van Swieten, J; Dopper, E; Jiskoot, L; van Minkelen, R; ... Rossor, MN; + view all (2015) Presymptomatic cognitive and neuroanatomical changes in genetic frontotemporal dementia in the Genetic Frontotemporal dementia Initiative (GENFI) study: a cross-sectional analysis. Lancet Neurol , 14 (3) 253 - 262. 10.1016/S1474-4422(14)70324-2. Green open access
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Rohrer, JD; Woollacott, IOC; Dick, KM; Brotherhood, E; Gordon, E; Fellows, A; Toombs, J; ... Zetterberg, H; + view all (2016) Serum neurofilament light chain protein is a measure of disease intensity in frontotemporal dementia. NEUROLOGY , 87 (13) pp. 1329-1336. 10.1212/WNL.0000000000003154. Green open access
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Roth, HR; McClelland, JR; Boone, DJ; Modat, M; Cardoso, MJ; Hampshire, TE; Hu, MX; ... Hawkes, DJ; + view all (2011) Registration of the endoluminal surfaces of the colon derived from prone and supine CT colonography. Medical Physics , 38 (6) pp. 3077-3089. 10.1118/1.3577603. Green open access
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Salvado, G; Brugulat-Serrat, A; Sudre, CH; Grau-Rivera, O; Suarez-Calvet, M; Falcon, C; Fauria, K; ... Huget, J; + view all (2019) Spatial patterns of white matter hyperintensities associated with Alzheimer's disease risk factors in a cognitively healthy middle-aged cohort. Alzheimer's Research and Therapy , 11 , Article 12. 10.1186/s13195-018-0460-1. Green open access
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Sekine, T; Burgos, N; Warnock, G; Huellner, MW; Buck, A; Ter Voert, EE; Cardoso, MJ; ... Delso, G; + view all (2016) Multi atlas-based attenuation correction for brain FDG-PET imaging using a TOF-PET/MR scanner- comparison with clinical single atlas- and CT-based attenuation correction. Journal of Nuclear Medicine , 57 (8) pp. 1258-1264. 10.2967/jnumed.115.169045. Green open access
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Simpson, IJ; Cardoso, MJ; Modat, M; Cash, DM; Woolrich, MW; Andersson, JL; Schnabel, JA; (2015) Probabilistic non-linear registration with spatially adaptive regularisation. Medical Image Analysis , 26 (1) pp. 203-216. 10.1016/j.media.2015.08.006. Green open access
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Singleton, EH; Pijnenburg, YAL; Sudre, CH; Groot, C; Kochova, E; Barkhof, F; La Joie, R; ... Ossenkoppele, R; + view all (2020) Investigating the clinico-anatomical dissociation in the behavioral variant of Alzheimer disease. Alzheimer's Research & Therapy , 12 (1) , Article 148. 10.1186/s13195-020-00717-z. Green open access
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Smith, LA; Melbourne, A; Owen, D; Cardoso, MJ; Sudre, CH; Tillin, T; Sokolska, M; ... Jäger, HR; + view all (2019) Cortical cerebral blood flow in ageing: effects of haematocrit, sex, ethnicity and diabetes. European Radiology , 29 (10) 5549 -5558. 10.1007/s00330-019-06096-w. Green open access
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Steventon, JJ; Trueman, RC; Ma, D; Yhnell, E; Bayram-Weston, Z; Modat, M; Cardoso, J; ... Jones, DK; + view all (2016) Longitudinal in vivo MRI in a Huntington's disease mouse model: Global atrophy in the absence of white matter microstructural damage. Scientific Reports , 6 , Article 32423. 10.1038/srep32423. Green open access
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Sudre, CH; Murray, B; Varsavsky, T; Graham, MS; Penfold, RS; Bowyer, RC; Pujol, JC; ... Steves, CJ; + view all (2021) Attributes and predictors of long COVID. Nature Medicine , 27 pp. 626-631. 10.1038/s41591-021-01292-y. Green open access
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Sudre, C; Cardoso, MJ; Bouvy, W; Biessels, G; Barnes, J; Ourselin, S; (2015) Bayesian model selection for pathological neuroimaging data applied to white matter lesion segmentation. IEEE Transactions on Medical Imaging , 34 (10) pp. 2079-2102. 10.1109/TMI.2015.2419072. Green open access
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Sudre, CH; Anson, BG; Davagnanamd, I; Schmitt, A; Mendelson, AF; Prados, F; Smith, L; ... Ourselin, S; + view all (2018) Bullseye's representation of cerebral white matter hyperintensities. Journal of Neuroradiology , 45 (2) pp. 114-122. 10.1016/j.neurad.2017.10.001. Green open access
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Sudre, CH; Anson, BG; Ingala, S; Lane, CD; Jimenez, D; Haider, L; Varsavsky, T; ... Cardoso, MJ; + view all (2019) 3D multirater RCNN for multimodal multiclass detection and characterisation of extremely small objects. Proceedings of Machine Learning Research , 102 pp. 447-456. Green open access
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Sudre, CH; Anson, BG; Ingala, S; Lane, CD; Jimenez, D; Haider, L; Varsavsky, T; ... Cardoso, MJ; + view all (2019) Let's Agree to Disagree: Learning Highly Debatable Multirater Labelling. Medical Image Computing and Computer Assisted Intervention – MICCAI 2019 , 11767 pp. 665-673. 10.1007/978-3-030-32251-9_73. Green open access
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Sudre, CH; Bocchetta, M; Cash, D; Thomas, DL; Woollacott, I; Dick, KM; van Swieten, J; ... Genetic FTD Initiative, GENFI, .; + view all (2017) White matter hyperintensities are seen only in GRN mutation carriers in the GENFI cohort. NeuroImage: Clinical , 15 pp. 171-180. 10.1016/j.nicl.2017.04.015. Green open access
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Sudre, CH; Bocchetta, M; Heller, C; Convery, R; Neason, M; Moore, KM; Cash, DM; ... Rohrer, JD; + view all (2019) White matter hyperintensities in progranulin-associated frontotemporal dementia – a longitudinal GENFI study. NeuroImage: Clinical , Article 102077. 10.1016/j.nicl.2019.102077. (In press). Green open access
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Sudre, CH; Cardoso, MJ; Frost, C; Barnes, J; Barkhof, F; Fox, N; Ourselin, S; (2017) APOE ε4 status is associated with white matter hyperintensities volume accumulation rate independent of AD diagnosis. Neurobiology of Aging , 53 pp. 67-75. 10.1016/j.neurobiolaging.2017.01.014. Green open access
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Sudre, CH; Cardoso, MJ; Ourselin, S; (2017) Longitudinal segmentation of age-related white matter hyperintensities. MEDICAL IMAGE ANALYSIS , 38 pp. 50-64. 10.1016/j.media.2017.02.007. Green open access
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Sudre, CH; Lee, KA; Lochlainn, MN; Varsavsky, T; Murray, B; Graham, MS; Menni, C; ... Ourselin, S; + view all (2021) Symptom clusters in COVID-19: A potential clinical prediction tool from the COVID Symptom Study app. Science Advances , 7 (12) , Article eabd4177. 10.1126/sciadv.abd4177. Green open access
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Sudre, CH; Panovska-Griffiths, J; Sanverdi, E; Brandner, S; Katsaros, VK; Stranjalis, G; Pizzini, FB; ... Bisdas, S; + view all (2020) Machine learning assisted DSC-MRI radiomics as a tool for glioma classification by grade and mutation status. BMC Medical Informatics and Decision Making , 20 , Article 149. 10.1186/s12911-020-01163-5. Green open access
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Sudre, CH; Smith, L; Atkinson, D; Chaturvedi, N; Ourselin, S; Barkhof, F; Hughes, AD; ... Cardoso, MJ; + view all (2018) Cardiovascular Risk Factors and White Matter Hyperintensities: Difference in Susceptibility in South Asians Compared With Europeans. Journal of the American Heart Association , 7 (21) , Article e010533. 10.1161/JAHA.118.010533. Green open access
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Ten Kate, M; Sudre, CH; den Braber, A; Konijnenberg, E; Nivard, MG; Cardoso, MJ; Scheltens, P; ... Visser, PJ; + view all (2018) White matter hyperintensities and vascular risk factors in monozygotic twins. Neurobiology of Aging , 66 pp. 40-48. 10.1016/j.neurobiolaging.2018.02.002. Green open access
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Varsavsky, T; Graham, MS; Canas, LS; Ganesh, S; Capdevila Pujol, J; Sudre, CH; Murray, B; ... Ourselin, S; + view all (2021) Detecting COVID-19 infection hotspots in England using large-scale self-reported data from a mobile application: a prospective, observational study. Lancet Public Health , 6 (1) e21-e29. 10.1016/S2468-2667(20)30269-3. Green open access
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Vonach, M; Marson, B; Yun, M; Cardoso, J; Modat, M; Ourselin, S; Holder, D; (2012) A method for rapid production of subject specific finite element meshes for electrical impedance tomography of the human head. Physiological Measurement , 33 (5) pp. 801-816. 10.1088/0967-3334/33/5/801. Green open access
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Vos, SB; Winston, GP; Goodkin, O; Pemberton, HG; Barkhof, F; Prados, F; Galovic, M; ... Duncan, JS; + view all (2020) Hippocampal profiling: Localized magnetic resonance imaging volumetry and T2 relaxometry for hippocampal sclerosis. Epilepsia , 61 (2) pp. 297-309. 10.1111/epi.16416. Green open access
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Wells, JA; O'Callaghan, JM; Holmes, HE; Powell, NM; Johnson, RA; Siow, B; Torrealdea, F; ... Lythgoe, MF; + view all (2015) In vivo imaging of tau pathology using multi-parametric quantitative MRI. Neuroimage , 111 pp. 369-378. 10.1016/j.neuroimage.2015.02.023. Green open access
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Weston, PS; Paterson, RW; Modat, M; Burgos, N; Cardoso, MJ; Magdalinou, N; Lehmann, M; ... Schott, JM; + view all (2015) Using florbetapir positron emission tomography to explore cerebrospinal fluid cut points and gray zones in small sample sizes. Alzheimer's & Dementia: Diagnosis, Assessment & Disease Monitoring , 1 (4) pp. 440-446. 10.1016/j.dadm.2015.10.001. Green open access
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Winston, GP; Cardoso, MJ; Williams, EJ; Burdett, JL; Bartlett, PA; Espak, M; Behr, C; ... Ourselin, S; + view all (2013) Automated hippocampal segmentation in patients with epilepsy: Available free online. Epilepsia , 54 (12) pp. 2166-2173. 10.1111/epi.12408. Green open access
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Winston, GP; Vos, SB; Burdett, JL; Cardoso, MJ; Ourselin, S; Duncan, JS; (2017) Automated T2 relaxometry of the hippocampus for temporal lobe epilepsy. Epilepsia , 58 (9) pp. 1645-1652. 10.1111/epi.13843. Green open access
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Woollacott, IOC; Bocchetta, M; Sudre, CH; Ridha, BH; Strand, C; Courtney, R; Ourselin, S; ... Rohrer, JD; + view all (2018) Pathological correlates of white matter hyperintensities in a case of progranulin mutation associated frontotemporal dementia. Neurocase , 24 (3) pp. 166-174. 10.1080/13554794.2018.1506039. Green open access
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Young, AL; Marinescu, RV; Oxtoby, NP; Bocchetta, M; Yong, K; Firth, NC; Cash, DM; ... Alzheimer’s Disease Neuroimaging Initiative (ADNI), .; + view all (2018) Uncovering the heterogeneity and temporal complexity of neurodegenerative diseases with Subtype and Stage Inference. Nature Communications , 9 , Article 4273. 10.1038/s41467-018-05892-0. Green open access
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Young, J; Modat, M; Cardoso, MJ; Mendelson, A; Cash, D; Ourselin, S; (2013) Accurate multimodal probabilistic prediction of conversion to Alzheimer's disease in patients with mild cognitive impairment. NeuroImage: Clinical , 2 (1) 735 - 745. 10.1016/j.nicl.2013.05.004. Green open access
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Zuluaga Valencia, MA; Rodionov, R; Nowell, M; Achhala, S; Zombori, G; Mendelson, AF; Cardoso, MJ; ... Ourselin, S; + view all (2015) Stability, Structure and Scale: Improvements in Multi-modal Vessel Extraction for SEEG Trajectory Planning. International Journal of Computer Assisted Radiology and Surgery , 10 (8) pp. 1227-1237. 10.1007/s11548-015-1174-5. Green open access
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Proceedings paper

Borges, P; Shaw, R; Varsavsky, T; Klaser, K; Thomas, D; Drobnjak, I; Ourselin, S; (2021) The Role of MRI Physics in Brain Segmentation CNNs: Achieving Acquisition Invariance and Instructive Uncertainties. In: Simulation and Synthesis in Medical Imaging. SASHIMI 2021. (pp. pp. 67-76). Springer: Cham, Switzerland. Green open access
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Borges, P; Sudre, C; Varsavsky, T; Thomas, D; Drobnjak, I; Ourselin, S; Cardoso, MJ; (2019) Physics-informed brain MRI segmentation. In: Burgos, N and Gooya, A and Svoboda, D, (eds.) SASHIMI 2019: Simulation and Synthesis in Medical Imaging. (pp. pp. 100-109). Springer: Shenzhen, China. Green open access
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Bragman, F; Tanno, R; Ourselin, S; Alexander, D; Cardoso, J; (2020) Stochastic filter groups for multi-task cnns: Learning specialist and generalist convolution kernels. In: Proceedings of 2019 IEEE/CVF International Conference on Computer Vision (ICCV). (pp. pp. 1385-1394). IEEE: Seoul, Korea. Green open access
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Bragman, FJS; Tanno, R; Eaton-Rosen, Z; Li, W; Hawkes, DJ; Ourselin, S; Alexander, DC; ... Cardoso, MJ; + view all (2018) Uncertainty in Multitask Learning: Joint Representations for Probabilistic MR-only Radiotherapy Planning. In: Frangi, AF and Schnabel, JA and Davatzikos, C and Alberola-López, C and Fichtinger, G, (eds.) Medical Image Computing and Computer Assisted Intervention: Proceedings, Part IV. (pp. pp. 3-11). Springer: Cham, Switzerland. Green open access
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Bragman, FJS; Tanno, R; Ourselin, S; Alexander, DC; Cardoso, MJ; (2019) Learning task-specific and shared representations in medical imaging. In: Medical Image Computing and Computer Assisted Intervention – MICCAI 2019. (pp. pp. 374-383). Springer Nature: Cham, Switzerland. Green open access
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Brudfors, M; Balbastre, Y; Ashburner, J; Rees, G; Nachev, P; Ourselin, S; Cardoso, MJ; (2021) An MRF-UNet Product of Experts for Image Segmentation. In: Proceedings of Machine Learning Research. (pp. pp. 48-59). Proceedings of Machine Learning Research (PMLR): Lübeck, Germany. Green open access
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Burgos, N; Cardoso, MJ; Guerreiro, F; Veiga, C; Modat, M; McClelland, J; Knopf, A-C; ... Ourselin, S; + view all (2015) Robust CT Synthesis for Radiotherapy Planning: Application to the Head and Neck Region. In: Navab, N and Hornegger, J and Wells, WM and Frangi, AF, (eds.) Proceedings of the 18th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI). (pp. pp. 476-484). Springer, Mach: Munich, Germany. Green open access
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Burgos, N; Cardoso, MJ; Mendelson, AF; Schott, JM; Atkinson, D; Arridge, SR; Hutton, BF; (2015) Subject-specific Models for the Analysis of Pathological FDG PET Data. In: Navab, N and Hornegger, J and Wells, WM and Frangi, AF, (eds.) Proceedings of the 18th International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI). (pp. pp. 651-658). Springer, Cham: Munich, Germany. Green open access
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Burgos, N; Guerreiro, F; McClelland, J; Nill, S; Dearnaley, D; Desouza, N; Oelfke, U; ... Cardoso, MJ; + view all (2016) Joint segmentation and CT synthesis for MRI-only radiotherapy treatment planning. In: Ourselin, S and Joskowicz, L and Sabuncu, M and Unal, G and Wells, W, (eds.) International Conference on Medical Image Computing and Computer-Assisted Intervention. (pp. pp. 547-555). Springer: Cham, Switzerland. Green open access
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Burgos, N; Thielemans, K; Cardoso, MJ; Markiewicz, P; Jiao, J; Dickson, J; Duncan, JS; ... Ourselin, S; + view all (2014) Effect of scatter correction when comparing attenuation maps: Application to brain PET/MR. In: Proceedings of the 2014 IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC). IEEE: Seattle, WA, USA. Green open access
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Canas, LS; Yvernault, BC; Sudre, CH; Vita, ED; Cardoso, MJ; Thornton, JS; Barkhof, F; ... Modat, M; + view all (2018) Imaging biomarkers for the diagnosis of Prion disease. In: Angelini, ED and Landman, BA, (eds.) Medical Imaging 2018: Image Processing. (pp. p. 1057405). SPIE: Houston, Texas, United States. Green open access
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Cardoso, MJ; Modat, M; Vercauteren, T; Ourselin, S; (2015) Scale factor point spread function matching: beyond aliasing in image resampling. In: Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015. (pp. pp. 675-683). Springer International Publishing Green open access
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Eaton-Rosen, Z; Melbourne, A; Jorge Cardoso, M; Marlow, N; Ourselin, S; (2016) Beyond the resolution limit: Diffusion parameter estimation in partial volume. In: Ourselin, S and Joskowicz, J and Sabuncu, MR and Unal, G and Wells, W, (eds.) Medical Image Computing and Computer-Assisted Intervention MICCAI 2016. (pp. pp. 605-612). Springer International Publishing AG Green open access
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Graham, MS; Sudre, CH; Varsavsky, T; Tudosiu, PD; Nachev, P; Ourselin, S; Cardoso, MJ; (2020) Hierarchical Brain Parcellation with Uncertainty. In: Sudre, C and Fehri, H and Arbel, T and Baumgartner, C and Dalca, A and Tanno, R and Van Leemput, K and Wells, W and Sotiras, A and Papiez, B and Ferrante, E and Parisot, S, (eds.) UNSURE 2020, GRAIL 2020: Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, and Graphs in Biomedical Image Analysis. (pp. pp. 23-31). Springer: Lima, Peru. Green open access
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Groothuis, I; Sudre, CH; Ingala, S; Barnes, J; Gispert, JD; Sørensen, L; Pai, A; ... Modat, M; + view all (2021) Lesion-wise evaluation for effective performance monitoring of small object segmentation. In: Proceedings SPIE 11596, Medical Imaging 2021: Image Processing. SPIE Green open access
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Klaser, K; Borges, P; Shaw, R; Ranzini, M; Modat, M; Atkinson, D; Thielemans, K; ... Ourselin, S; + view all (2020) Uncertainty-aware multi-resolution whole-body MR to CT synthesis. In: International Workshop on Simulation and Synthesis in Medical Imaging SASHIMI 2020: Simulation and Synthesis in Medical Imaging. (pp. pp. 110-119). Springer, Cham Green open access
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Kläser, K; Markiewicz, P; Ranzini, M; Li, W; Modat, M; Hutton, BF; Atkinson, D; ... Ourselin, S; + view all (2018) Deep Boosted Regression for MR to CT Synthesis. In: Gooya, A and Goksel, O and Oguz, I and Burgos, N, (eds.) SASHIMI 2018: Simulation and Synthesis in Medical Imaging: Proceedings. (pp. pp. 61-70). Springer: Cham, Switzerland. Green open access
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Klaser, K; Varsavsky, T; Markiewicz, P; Atkinson, D; Thielemans, K; Hutton, B; Cardoso, M; (2019) Improved MR to CT synthesis for PET/MR attenuation correction using Imitation Learning. In: Burgos, N and Gooya, A and Svoboda, D, (eds.) Simulation and Synthesis in Medical Imaging. SASHIMI 2019. Lecture Notes in Computer Science, vol 11827. Springer: Cham. Green open access
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Kochan, M; Daga, P; Burgos, N; Cardoso, MJ; Stoyanov, D; Ourselin, S; White, M; ... Duncan, JS; + view all (2014) Simulated field maps: Toward improved susceptibility artefact correction in interventional MRI. In: Stoyanov, D and Collins, DL and Sakuma, I and Abolmaesumi, P and Jannin, P, (eds.) Information Processing in Computer-Assisted Interventions: 5th International Conference, IPCAI 2014, Fukuoka, Japan, June 28, 2014. Proceedings. (pp. pp. 226-235). Springer International Publishing: Switzerland. Green open access
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Li, W; Wang, G; Fidon, L; Ourselin, S; Cardoso, MJ; Vercauteren, T; (2017) On the compactness, efficiency, and representation of 3D convolutional networks: Brain parcellation as a pretext task. In: Niethammer, M and Styner, M and Aylward, S and Zhu, H and Oguz, I and Yap, PT and Shen, D, (eds.) Information Processing in Medical Imaging: 25th International Conference, IPMI 2017, Boone, NC, USA, June 25-30, 2017, Proceedings. (pp. pp. 348-360). Springer: Cham, Switzerland. Green open access
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Ma, D; Cardoso, M; Modat, M; Powell, N; Holmes, H; Lythgoe, M; Ourselin, S; (2012) Multi Atlas Segmentation applied to in vivo mouse brain MRI. In: Landman, BA and Warfield, SK, (eds.) MICCAI 2012 Workshop on Multi-Atlas Labeling. (pp. 134 - 143). MICCAI 2012 Workshop on Multi-Atlas Labeling: Nice. Green open access
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Ma, D; Cardoso, MJ; Zuluaga, MA; Modat, M; Powell, N; Wiseman, F; Tybulewicz, V; ... Ourselin, S; + view all (2015) Grey matter sublayer thickness estimation in the mouse cerebellum. In: Navab, N and Hornegger, J and Wells, WM and Frangi, AF, (eds.) Proceedings of 18th International Conference in Medical Image Computing and Computer-Assisted Intervention – MICCAI 2015. (pp. pp. 644-651). Springer International Publishing Switzerland: Munich, Germany. Green open access
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Melbourne, A; Eaton-Rosen, Z; De Vita, E; Bainbridge, A; Cardoso, MJ; Price, D; Cady, E; ... Ourselin, S; + view all (2014) Multi-modal measurement of the myelin-to-axon diameter g-ratio in preterm-born neonates and adult controls. In: Golland, P and Hata, N and Barillot, C and Hornegger, J and Howe, R, (eds.) Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014: 17th International Conference, Boston, MA, USA, September 14-18, 2014, Proceedings, Part II. (pp. pp. 268-275). Springer International Publishing: Switzerland. Green open access
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Melbourne, A; Orasanu, E; Eaton-Rosen, Z; Cardoso, MJ; Beckmann, J; Smith, L; Atkinson, D; ... Ourselin, S; + view all (2016) Analysis of brain volume in a 19 year-old extremely-preterm born cohort. In: Proceedings of the ISMRM 24th Annual Meeting & Exhibition. (pp. p. 4082). International Society for Magnetic Resonance in Medicine (ISMRM): Singapore. Green open access
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Modat, M; Leung, KK; Cardoso, MJ; Fox, NC; (2012) Atrophy Measurement Based on Segmentation Propagation and the Boundary Shift Integral Technique. In: Wang, L and Yushkevich, P and Ourselin, S, (eds.) NIBAD'12: MICCAI 2012 Workshop on Novel Imaging Biomarkers for Alzheimer's Disease and Related Disorders, October 5, 2012, Acropolis Convention Center, Nice, France. (pp. 266 - 274). CreateSpace Independent Publishing Platform Green open access
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Moriconi, S; Zuluaga, MA; Jäger, HR; Nachev, P; Ourselin, S; Cardoso, MJ; (2018) Elastic registration of geodesic vascular graphs. In: Frangi, A and Schnabel, JA and Davatzikos, C and Alberola-López, C, (eds.) Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 21st International Conference, Granada, Spain, September 16-20, 2018, Proceedings, Part I. (pp. pp. 810-818). Springer: Cham, Switzerland. Green open access
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Moriconi, S; Zuluaga, MA; Jäger, HR; Nachev, P; Ourselin, S; Cardoso, MJ; (2017) VTrails: Inferring vessels with geodesic connectivity trees. In: Niethammer, M and Styner, M and Aylward, S and Zhu, H and Oguz, I and Yap, PT and Shen, D, (eds.) Information Processing in Medical Imaging. (pp. pp. 672-684). Springer: Cham, Switzerland. Green open access
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Orbes-Arteaga, M; Varsavsky, T; Sudre, CH; Eaton-Rosen, Z; Haddow, LJ; Sørensen, L; Nielsen, M; ... Cardoso, MJ; + view all (2019) Multi-domain adaptation in brain MRI through paired consistency and adversarial learning. In: Domain Adaptation and Representation Transfer and Medical Image Learning with Less Labels and Imperfect Data. (pp. pp. 54-62). Springer: Cham, Switzerland. Green open access
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Prados Carrasco, F; Cardoso, MJ; Burgos, N; Wheeler-Kingshott, CAM; Ourselin, S; (2016) NiftyWeb: web based platform for image processing on the cloud. In: Proceedings of the 24th Scientific Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine (ISMRM). International Society for Magnetic Resonance in Medicine (ISMRM): Singapore. Green open access
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Prados Carrasco, F; Cardoso, MJ; Yiannakas, MC; Hoy, LR; Tebaldi, E; Kearney, H; Liechti, MD; ... Ourselin, S; + view all (2016) Fully automated grey and white matter segmentation of the cervical cord in vivo. In: Proceedings of the 24th Scientific Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine (ISMRM). International Society for Magnetic Resonance in Medicine (ISMRM): Singapore. Green open access
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Prados Carrasco, F; Yiannakas, MC; Cardoso, MJ; Grussu, F; De Angelis, F; Plantone, D; Miller, DH; ... Ourselin, S; + view all (2016) Computing spinal cord atrophy using the Boundary Shift Integral: a more powerful outcome measure for clinical trials? In: ECTRIMS Online Library. (pp. P1605). European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS): Basel, Switzerland. Green open access
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Prados Carrasco, F; Yiannakas, MC; Cardoso, MJ; Grussu, F; De Angelis, F; Plantone, D; Miller, DH; ... Ourselin, S; + view all (2016) Atrophy computation in the spinal cord using the Boundary Shift Integral. In: Proceedings of the 24th Scientific Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine (ISMRM). International Society for Magnetic Resonance in Medicine (ISMRM): Singapore. Green open access
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Ranzini, MBM; Ebner, M; Cardoso, MJ; Fotiadou, A; Vercauteren, T; Henckel, J; Hart, A; ... Modat, M; + view all (2018) Joint Multimodal Segmentation of Clinical CT and MR from Hip Arthroplasty Patients. In: Glocker, B and Yao, J and Vrtovec, T and Frangi, A and Zheng, G, (eds.) Computational Methods and Clinical Applications in Musculoskeletal Imaging: 5th International Workshop, MSKI 2017, Held in Conjunction with MICCAI 2017, Quebec City, QC, Canada, September 10, 2017, Revised Selected Papers. Springer: Cham, Switzerland. Green open access
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Ranzini, MBM; Groothuis, I; Klaser, K; Cardoso, MJ; Henckel, J; Ourselin, S; Hart, A; (2020) Combining Multimodal Information for Metal Artefact Reduction: An Unsupervised Deep Learning Framework. In: Proceedings - International Symposium on Biomedical Imaging. (pp. pp. 600-604). IEEE: Iowa City, IA, USA. Green open access
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Samson, RS; Cardoso, MJ; Muhlert, N; Sethi, V; Yaldizli, Ö; Ron, MA; Prados Carrasco, F; ... Chard, DT; + view all (2017) Longitudinal outer and inner cortical MTR abnormalities in different MS clinical phenotypes. In: Proceedings of the ISMRM 25th Annual Meeting & Exhibition. International Society for Magnetic Resonance in Medicine (ISMRM): Honululu, HI, USA. Green open access
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Scott, CJ; Jiao, J; Cardoso, MJ; Kläser, K; Melbourne, A; Markiewicz, PJ; Schott, JM; ... Ourselin, S; + view all (2018) Short acquisition time PET/MR pharmacokinetic modelling using CNNs. In: Proceedings of the International Conference on Medical Image Computing and Computer-Assisted Intervention: MICCAI 2018. (pp. pp. 48-56). Springer, Cham: Granada, Spain. Green open access
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Scott, CJ; Jiao, J; Cardoso, MJ; Melbourne, A; De Vita, E; Thomas, DL; Burgos, N; ... Ourselin, S; + view all (2017) Short acquisition time PET quantification using MRI-based pharmacokinetic parameter synthesis. In: Descoteaux, M and Maier-Hein, L and Franz, A and Jannin, P and Collins, D and Duchesne, S, (eds.) MICCAI 2017: International Conference on Medical Image Computing and Computer-Assisted Intervention. (pp. pp. 737-744). Springer: Cham, Switzerland. Green open access
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Shaw, R; Sudre, CH; Ourselin, S; Cardoso, MJ; (2020) A Heteroscedastic Uncertainty Model for Decoupling Sources of MRI Image Quality. In: Proceedings of the Third Conference on Medical Imaging with Deep Learning. (pp. pp. 733-742). PMLR: Montreal, QC, Canada. Green open access
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Silva, MD; Sudre, CH; Garcia, K; Bass, C; Cardoso, MJ; Robinson, EC; (2021) Distinguishing Healthy Ageing from Dementia: A Biomechanical Simulation of Brain Atrophy Using Deep Networks. In: Machine Learning in Clinical Neuroimaging. (pp. pp. 13-22). Springer: Cham, Switzerland. Green open access
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Sudre, CH; Li, W; Vercauteren, T; Ourselin, S; Cardoso, MJ; (2017) Generalised Dice overlap as a deep learning loss function for highly unbalanced segmentations. In: Deep Learning in Medical Image Analysis and Multimodal Learning for Clinical Decision Support. (pp. pp. 240-248). Springer Nature: Cham, Switzerland. Green open access
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Tudosiu, Petru-Daniel; Pinaya, Walter Hugo Lopez; Graham, Mark S; Borges, Pedro; Fernandez, Virginia; Yang, Dai; Appleyard, Jeremy; ... Cardoso, Jorge; + view all (2022) Morphology-Preserving Autoregressive 3D Generative Modelling of the Brain. In: Zhao, C and Svoboda, D and Wolterink, JM and Escobar, M, (eds.) Simulation and Synthesis in Medical Imaging. SASHIMI 2022. (pp. pp. 66-78). Springer, Cham Green open access
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Varsavsky, T; Orbes-Arteaga, M; Sudre, CH; Graham, MS; Nachev, P; Cardoso, MJ; (2020) Test-time unsupervised domain adaptation. In: Medical Image Computing and Computer Assisted Intervention – MICCAI 2020. (pp. pp. 428-436). Springer: Peru. Green open access
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Varsavsky, T; Eaton-Rosen, Z; Sudre, CH; Nachev, P; Cardoso, MJ; (2018) Pimms: Permutation invariant multi-modal segmentation. In: Deep Learning in Medical Image Analysis and Multimodal Learning for Clinical Decision Support. (pp. pp. 201-209). Springer: Cham, Switzerland. Green open access
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Zuluaga, MA; Cardoso, MJ; Modat, M; Ourselin, S; (2013) Multi-atlas propagation whole heart segmentation from MRI and CTA using a local normalised correlation coefficient criterion. In: Ourselin, S and Rueckert, D and Smith, N, (eds.) Functional Imaging and Modeling of the Heart: 7th International Conference, FIMH 2013, London, UK, June 20-22, 2013. Proceedings. (pp. 174 - 181). Springer Berlin Heidelberg: Berlin, Germany. Green open access
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Zuluaga, MA; Rodionov, R; Nowell, M; Achhala, S; Zombori, G; Cardoso, MJ; Miserocchi, A; ... Ourselin, S; + view all (2014) SEEG trajectory planning: combining stability, structure and scale in vessel extraction. In: Golland, P and Hata, N and Barillot, C and Hornegger, J and Howe, R, (eds.) Medical Image Computing and Computer-Assisted Intervention – MICCAI 2014: 17th International Conference, Boston, MA, USA, September 14-18, 2014, Proceedings, Part II. (pp. pp. 651-658). Springer International Publishing: Switzerland. Green open access
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Working / discussion paper

Sudre, C; Murray, B; Varsavsky, T; Graham, M; Penfold, R; Bowyer, R; Pujol, JC; ... Steves, C; + view all (2020) Attributes and predictors of Long-COVID: analysis of COVID cases and their symptoms collected by the Covid Symptoms Study App. MedRxiv: Cold Spring Harbor, NY, USA. Green open access
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Conference item

Prados Carrasco, F; Solanky, BS; Alves da Mota, P; Cardoso, MJ; Brownlee, WJ; Riemer, F; Miller, DH; ... Wheeler-Kingshott, CAM; + view all (2016) Regional variation of total sodium concentration in the healthy human brain. Presented at: International Society for Magnetic Resonance in Medicine (ISMRM) 24th Scientific Meeting and Exhibition, Singapore. Green open access
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Prados Carrasco, F; Solanky, BS; Alves Da Mota, P; Cardoso, MJ; Brownlee, WJ; Riemer, F; Miller, DH; ... Ourselin, S; + view all (2016) Automatic sodium maps reconstruction using PatchMatch algorithm for phantom detection. Presented at: International Society for Magnetic Resonance in Medicine (ISMRM) 24th Scientific Meeting and Exhibition, Singapore. Green open access
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Samson, RS; Brownlee, WJ; Cardoso, MJ; Brown, WJL; Pardini, M; Prados Carrasco, F; Ourselin, S; ... Chard, DT; + view all (2016) Outer and inner cortical MTR abnormalities in clinically isolated syndromes. Presented at: ECTRIMS 2016: 32nd Congress of the European Committee for Treatment and Research in Multiple Sclerosis, London, UK. Green open access
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Samson, RS; Cardoso, MJ; Brownlee, WJ; Brown, WJL; Pardini, M; Ourselin, S; Wheeler-Kingshott, CAM; (2016) Outer and inner cortical MTR abnormalities observed in clinically isolated syndromes. Presented at: International Society for Magnetic Resonance in Medicine (ISMRM) 24th Annual Meeting & Exhibition 2016, Singapore, Malaysia. Green open access
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Smith, L; Melbourne, A; Owen, D; Cardoso, MJ; Sudre, C; Tillin, T; Sokolska, M; ... Jager, R; + view all (2018) Cortical Cerebral Blood Flow in Aging: Effects of Haematocrit, Sex and Ethnicity. Presented at: Joint Annual Meeting ISMRM-ESMRMB 2018, Paris, France. Green open access
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Thesis

Burgos, NF; (2016) Image synthesis for the attenuation correction and analysis of PET/MR data. Doctoral thesis , UCL (University College London). Green open access
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Machado Cardoso, MJ; (2012) Automated Morphometric Characterization of the Cerebral Cortex for the Developing and Ageing Brain. Doctoral thesis , UCL (University College London). Green open access
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Sudre, CH; (2016) Automated segmentation and characterisation of white matter hyperintensities. Doctoral thesis , UCL (University College London). Green open access
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This list was generated on Sun Jan 4 02:53:33 2026 GMT.