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Brain Imaging Generation with Latent Diffusion Models

Pinaya, WHL; Tudosiu, PD; Dafflon, J; Da Costa, PF; Fernandez, V; Nachev, P; Ourselin, S; (2022) Brain Imaging Generation with Latent Diffusion Models. Lecture Notes in Computer Science , 13609 pp. 117-126. 10.1007/978-3-031-18576-2_12. Green open access

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Abstract

Deep neural networks have brought remarkable breakthroughs in medical image analysis. However, due to their data-hungry nature, the modest dataset sizes in medical imaging projects might be hindering their full potential. Generating synthetic data provides a promising alternative, allowing to complement training datasets and conducting medical image research at a larger scale. Diffusion models recently have caught the attention of the computer vision community by producing photorealistic synthetic images. In this study, we explore using Latent Diffusion Models to generate synthetic images from high-resolution 3D brain images. We used T1w MRI images from the UK Biobank dataset (N = 31,740) to train our models to learn about the probabilistic distribution of brain images, conditioned on covariates, such as age, sex, and brain structure volumes. We found that our models created realistic data, and we could use the conditioning variables to control the data generation effectively. Besides that, we created a synthetic dataset with 100,000 brain images and made it openly available to the scientific community.

Type: Article
Title: Brain Imaging Generation with Latent Diffusion Models
Open access status: An open access version is available from UCL Discovery
DOI: 10.1007/978-3-031-18576-2_12
Publisher version: https://doi.org/10.1007/978-3-031-18576-2_12
Language: English
Additional information: This version is the author accepted manuscript. For information on re-use, please refer to the publisher’s terms and conditions.
Keywords: Synthetic data, Diffusion models, Generative models, Brain imaging
UCL classification: UCL
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences
UCL > Provost and Vice Provost Offices > UCL BEAMS
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Brain Sciences
UCL > Provost and Vice Provost Offices > UCL BEAMS > Faculty of Engineering Science
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Brain Sciences > UCL Queen Square Institute of Neurology
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Brain Sciences > UCL Queen Square Institute of Neurology > Brain Repair and Rehabilitation
UCL > Provost and Vice Provost Offices > UCL BEAMS > Faculty of Engineering Science > Dept of Med Phys and Biomedical Eng
URI: https://discovery.ucl.ac.uk/id/eprint/10160383
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