Browse by UCL people
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Number of items: 102.
Article
Alim-Marvasti, A;
Pérez-García, F;
Dahele, K;
Romagnoli, G;
Diehl, B;
Sparks, R;
Ourselin, S;
... Duncan, JS; + view all
(2021)
Machine Learning for Localizing Epileptogenic-Zone in the Temporal Lobe: Quantifying the Value of Multimodal Clinical-Semiology and Imaging Concordance.
Frontiers in Digital Health
, 3
, Article 559103. 10.3389/fdgth.2021.559103.
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Beaton, L;
Daly, M;
Tregidgo, HF;
Grimes, H;
Moinuddin, S;
Stacey, C;
Znati, S;
... Sharma, RA; + view all
(2022)
Radiopaque drug-eluting embolisation beads as fiducial markers for stereotactic liver radiotherapy.
The British Journal of Radiology
, 95
(1130)
, Article 20210594. 10.1259/bjr.20210594.
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Beaton, Laura;
Tregidgo, Henry Fj;
Znati, Sami A;
Forsyth, Sharon;
Counsell, Nicholas;
Clarkson, Matthew J;
Bandula, Steven;
... Sharma, Ricky A; + view all
(2022)
Phase 0 study of vandetanib-eluting radiopaque embolics as a pre-operative embolization treatment in patients with resectable liver malignancies.
Journal of Vascular and Interventional Radiology
, 33
(9)
1034-1044.e29.
10.1016/j.jvir.2022.04.033.
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Beaton, L;
Tregidgo, HFJ;
Znati, SA;
Forsyth, S;
Clarkson, MJ;
Bandula, S;
Chouhan, M;
... Sharma, RA; + view all
(2019)
VEROnA Protocol: A Pilot, Open-Label, Single-Arm, Phase 0, Window-of-Opportunity Study of Vandetanib-Eluting Radiopaque Embolic Beads (BTG-002814) in Patients With Resectable Liver Malignancies.
JMIR Research Protocols
, 8
(10)
, Article e13696. 10.2196/13696.
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Birlo, Manuel;
Edwards, PJ Eddie;
Clarkson, Matthew;
Stoyanov, Danail;
(2022)
Utility of optical see-through head mounted displays in augmented reality-assisted surgery: A systematic review.
Medical Image Analysis
, 77
, Article 102361. 10.1016/j.media.2022.102361.
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Bonmati, E;
Hu, Y;
Grimwood, A;
Johnson, GJ;
Goodchild, G;
Keane, MG;
Gurusamy, K;
... Barratt, DC; + view all
(2021)
Voice-assisted Image Labelling for Endoscopic Ultrasound Classification using Neural Networks.
IEEE Transactions on Medical Imaging
10.1109/TMI.2021.3139023.
(In press).
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Bonmati, E;
Hu, Y;
Gibson, E;
Uribarri, L;
Keane, G;
Gurusami, K;
Davidson, B;
... Barratt, DC; + view all
(2018)
Determination of optimal ultrasound planes for the initialisation of image registration during endoscopic ultrasound-guided procedures.
International Journal of Computer Assisted Radiology and Surgery
, 13
(6)
pp. 875-883.
10.1007/s11548-018-1762-2.
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Chegini, S;
Edwards, E;
McGurk, M;
Clarkson, M;
Schilling, C;
(2022)
Systematic review of techniques used to validate the registration of augmented-reality images using a head-mounted device to navigate surgery.
British Journal of Oral and Maxillofacial Surgery
, 61
(1)
pp. 19-27.
10.1016/j.bjoms.2022.08.007.
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Chegini, Soudeh;
Tahim, Arpan;
Liu, Mingjun;
Edwards, Eddie;
Chooi, Yean;
Clarkson, Matthew;
Schilling, Clare;
(2023)
A training tool for clinicians in segmenting medical images to make 3D models.
Annals of Surgery Open
, 4
(2)
, Article e275. 10.1097/AS9.0000000000000275.
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Chen, L;
Hoque, MI;
Min, Z;
Clarkson, M;
Dowrick, T;
(2025)
Controllable illumination invariant GAN for diverse temporally-consistent surgical video synthesis.
Medical Image Analysis
, 105
, Article 103731. 10.1016/j.media.2025.103731.
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Clarkson, MJ;
Cardoso, MJ;
Ridgway, GR;
Modat, M;
Leung, KK;
Rohrer, JD;
Fox, NC;
(2011)
A comparison of voxel and surface based cortical thickness estimation methods.
Neuroimage
, 57
(3)
pp. 856-865.
10.1016/j.neuroimage.2011.05.053.
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Clarkson, MJ;
Zombori, G;
Thompson, S;
Totz, J;
Song, Y;
Espak, M;
Johnsen, S;
... Ourselin, S; + view all
(2015)
The NifTK software platform for image-guided interventions: platform overview and NiftyLink messaging.
International Journal of Computer Assisted Radiology and Surgery
, 10
(3)
pp. 301-316.
10.1007/s11548-014-1124-7.
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Dowrick, Thomas;
Davidson, Brian;
Gurusamy, Kurinchi;
Clarkson, Matthew J;
(2022)
Large scale simulation of labeled intraoperative scenes in unity.
International Journal of Computer Assisted Radiology and Surgery
10.1007/s11548-022-02598-z.
(In press).
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Dowrick, T;
Ahmed, M;
Thompson, S;
Hetherington, J;
Cooper, J;
Clarkson, M;
(2021)
CMakeCatchTemplate: A C++ template project.
Journal of Open Research Software
, 9
pp. 17-23.
10.5334/jors.319.
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Foti, S;
Koo, B;
Stoyanov, D;
Clarkson, MJ;
(2023)
3D Generative Model Latent Disentanglement via Local Eigenprojection.
Computer Graphics Forum
10.1111/cgf.14793.
(In press).
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Fu, Yunguan;
Li, Yiwen;
Saeed, Shaheer U;
Clarkson, Matthew J;
Hu, Yipeng;
(2023)
A Recycling Training Strategy for Medical Image Segmentation with Diffusion Denoising Models.
Machine Learning for Biomedical Imaging
, 2
(SI)
pp. 507-546.
10.59275/j.melba.2023-fbe4.
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Fu, Y;
Brown, NM;
Saeed, SU;
Casamitjana, A;
Baum, ZMC;
Delaunay, R;
Yang, Q;
... Hu, Y; + view all
(2020)
DeepReg: a deep learning toolkit for medical image registration.
The Journal of Open Source Software
, 5
(55)
, Article 2705. 10.21105/joss.02705.
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Gayo, Iani JMB;
Saeed, Shaheer U;
Bonmati, Ester;
Barratt, Dean C;
Clarkson, Matthew J;
Hu, Yipeng;
(2024)
The distinct roles of reinforcement learning between pre-procedure and intra-procedure planning for prostate biopsy.
International Journal of Computer Assisted Radiology and Surgery
10.1007/s11548-024-03084-4.
(In press).
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Gibson, E;
Giganti, F;
Hu, Y;
Bonmati, E;
Bandula, S;
Gurusamy, K;
Davidson, B;
... Barratt, DC; + view all
(2018)
Automatic Multi-organ Segmentation on Abdominal CT with Dense V-networks.
IEEE Transactions on Medical Imaging
, 37
(8)
pp. 1822-1834.
10.1109/TMI.2018.2806309.
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Granados, A;
Vakharia, V;
Rodionov, R;
Schweiger, M;
Vos, SB;
O'Keeffe, AG;
Li, K;
... Ourselin, S; + view all
(2018)
Automatic segmentation of stereoelectroencephalography (SEEG) electrodes post-implantation considering bending.
International Journal of Computer Assisted Radiology and Surgery
, 13
(6)
pp. 935-946.
10.1007/s11548-018-1740-8.
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Hill, ER;
Xia, W;
Clarkson, MJ;
Desjardins, AE;
(2017)
Identification and removal of laser-induced noise in photoacoustic imaging using singular value decomposition.
Biomedical Optics Express
, 8
(1)
pp. 68-77.
10.1364/BOE.8.000068.
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Hu, Y;
Kasivisvanathan, V;
Simmons, L;
Clarkson, M;
Thompson, S;
Shah, T;
Ahmed, H;
... Barratt, D; + view all
(2017)
Development and Phantom Validation of a 3D-Ultrasound-Guided System for Targeting MRI-visible Lesions during Transrectal Prostate Biopsy.
IEEE Transactions on Biomedical Engineering
, 64
(4)
pp. 946-958.
10.1109/TBME.2016.2582734.
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Johnsen, SF;
Taylor, ZA;
Clarkson, MJ;
Hipwell, J;
Modat, M;
Eiben, B;
Han, L;
... Ourselin, S; + view all
(2014)
NiftySim: A GPU-based nonlinear finite element package for simulation of soft tissue biomechanics.
International Journal of Computer Assisted Radiology and Surgery
10.1007/s11548-014-1118-5.
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Johnsen, SF;
Taylor, ZA;
Han, L;
Hu, Y;
Clarkson, MJ;
Hawkes, DJ;
Ourselin, S;
(2015)
Detection and modelling of contacts in explicit finite-element simulation of soft tissue biomechanics.
International Journal of Computer Assisted Radiology and Surgery
, 10
pp. 1873-1891.
10.1007/s11548-014-1142-5.
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Koo, B;
Robu, MR;
Allam, M;
Pfeiffer, M;
Thompson, S;
Gurusamy, K;
Davidson, B;
... Clarkson, MJ; + view all
(2021)
Automatic, global registration in laparoscopic liver surgery.
International Journal of Computer Assisted Radiology and Surgery
10.1007/s11548-021-02518-7.
(In press).
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Lee, Dannielle;
Mennillo, Laurent;
Burrows, Emalee;
Chen, Jia-En;
Khan, Danyal Z;
Starup-Hansen, Joachim;
Stoyanov, Danail;
... Bano, Sophia; + view all
(2025)
3D reconstruction in endonasal pituitary surgery.
International Journal of Computer Assisted Radiology and Surgery
10.1007/s11548-025-03362-9.
(In press).
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Lehmann, M;
Rohrer, JD;
Clarkson, MJ;
Ridgway, GR;
Scahill, RI;
Modat, M;
Warren, JD;
... Fox, NC; + view all
(2010)
Reduced Cortical Thickness in the Posterior Cingulate Gyrus is Characteristic of Both Typical and Atypical Alzheimer's Disease.
J ALZHEIMERS DIS
, 20
(2)
587 - 598.
10.3233/JAD-2010-1401.
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Li, Yiwen;
Fu, Yunguan;
Gayo, Iani JMB;
Yang, Qianye;
Min, Zhe;
Saeed, Shaheer U;
Yan, Wen;
... Hu, Yipeng; + view all
(2023)
Prototypical few-shot segmentation for cross-institution male pelvic structures with spatial registration.
Medical Image Analysis
, Article 102935. 10.1016/j.media.2023.102935.
(In press).
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Montaña-Brown, N;
Ramalhinho, J;
Allam, M;
Davidson, B;
Hu, Y;
Clarkson, MJ;
(2021)
Vessel segmentation for automatic registration of untracked laparoscopic ultrasound to CT of the liver.
International Journal of Computer Assisted Radiology and Surgery
10.1007/s11548-021-02400-6.
(In press).
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Mota, Ana M;
Clarkson, Matthew J;
Almeida, Pedro;
Matela, Nuno;
(2022)
Automatic Classification of Simulated Breast Tomosynthesis Whole Images for the Presence of Microcalcification Clusters Using Deep CNNs.
Journal of Imaging
, 8
(9)
, Article 231. 10.3390/jimaging8090231.
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Mota, AM;
Clarkson, MJ;
Almeida, P;
Matela, N;
(2020)
An Enhanced Visualization of DBT Imaging Using Blind Deconvolution and Total Variation Minimization Regularization.
IEEE Transactions on Medical Imaging
, 39
(12)
pp. 4094-4101.
10.1109/TMI.2020.3013107.
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Mota, AM;
Clarkson, MJ;
Almeida, P;
Matela, N;
(2020)
Optimization of Breast Tomosynthesis Visualization through 3D Volume Rendering.
Journal of Imaging
, 6
(7)
, Article 64. 10.3390/JIMAGING6070064.
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Mota, AM;
Clarkson, MJ;
Almeida, P;
Peralta, L;
Matela, N;
(2020)
Impact of total variation minimization in volume rendering visualization of breast tomosynthesis data.
Computer Methods and Programs in Biomedicine
, 195
, Article 105534. 10.1016/j.cmpb.2020.105534.
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Pérez-García, Fernando;
Alim-Marvasti, Ali;
Romagnoli, Gloria;
Clarkson, Matthew J;
Sparks, Rachel;
Duncan, John S;
Ourselin, Sébastien;
(2022)
Software tool for visualization of a probabilistic map of the epileptogenic zone from seizure semiologies.
Frontiers in Neuroinformatics
, 16
, Article 990859. 10.3389/fninf.2022.990859.
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Ramalhinho, João;
Dowrick, Thomas;
Bonmati, Ester;
Clarkson, Matthew J;
(2023)
Fan-Slicer: A Pycuda Package for Fast Reslicing of Ultrasound Shaped Planes.
Journal of Open Research Software
, 11
(1)
, Article 3. 10.5334/jors.422.
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Ramalhinho, João;
Koo, Bongjin;
Montaña-Brown, Nina;
Saeed, Shaheer U;
Bonmati, Ester;
Gurusamy, Kurinchi;
Pereira, Stephen P;
... Clarkson, Matthew J; + view all
(2022)
Deep hashing for global registration of untracked 2D laparoscopic ultrasound to CT.
International Journal of Computer Assisted Radiology and Surgery
10.1007/s11548-022-02605-3.
(In press).
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Ramalhinho, J;
Robu, MR;
Thompson, S;
Gurusamy, K;
Davidson, B;
Hawkes, D;
Barratt, D;
(2018)
A pre-operative planning framework for global registration of laparoscopic ultrasound to CT images.
International Journal of Computer Assisted Radiology and Surgery
, 13
(8)
pp. 1177-1186.
10.1007/s11548-018-1799-2.
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Ramalhinho, J;
Tregidgo, HFJ;
Gurusamy, K;
Hawkes, DJ;
Davidson, B;
Clarkson, MJ;
(2020)
Registration of Untracked 2D Laparoscopic Ultrasound to CT Images of the Liver using Multi-Labelled Content-Based Image Retrieval.
IEEE Transactions on Medical Imaging
10.1109/TMI.2020.3045348.
(In press).
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Robu, MR;
Edwards, P;
Ramalhinho, J;
Thompson, S;
Davidson, B;
Hawkes, D;
Stoyanov, D;
(2017)
Intelligent viewpoint selection for efficient CT to video registration in laparoscopic liver surgery.
International Journal of Computer Assisted Radiology and Surgery
, 12
(7)
pp. 1079-1088.
10.1007/s11548-017-1584-7.
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Robu, MR;
Ramalhinho, J;
Thompson, S;
Gurusamy, K;
Davidson, B;
Hawkes, D;
Stoyanov, D;
(2018)
Global rigid registration of CT to video in laparoscopic liver surgery.
International Journal of Computer Assisted Radiology and Surgery
, 13
(6)
pp. 947-956.
10.1007/s11548-018-1781-z.
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Saeed, Shaheer U;
Ramalhinho, João;
Montaña-Brown, Nina;
Bonmati, Ester;
Pereira, Stephen P;
Davidson, Brian;
Clarkson, Matthew J;
(2025)
Guided ultrasound acquisition for nonrigid image registration using reinforcement learning.
Medical Image Analysis
, 102
, Article 103555. 10.1016/j.media.2025.103555.
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Saeed, Shaheer U;
Ramalhinho, João;
Pinnock, Mark;
Shen, Ziyi;
Fu, Yunguan;
Montaña-Brown, Nina;
Bonmati, Ester;
... Hu, Yipeng; + view all
(2024)
Active learning using adaptable task-based prioritisation.
Medical Image Analysis
, 95
, Article 103181. 10.1016/j.media.2024.103181.
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Schneider, C;
Johnson, SP;
Walker-Samuel, S;
Gurusamy, K;
Clarkson, MJ;
Thompson, S;
Song, Y;
... Davidson, BR; + view all
(2016)
Utilizing confocal laser endomicroscopy for evaluating the adequacy of laparoscopic liver ablation.
Lasers in Surgery and Medicine
, 48
(3)
pp. 299-310.
10.1002/lsm.22464.
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Schneider, C;
Thompson, S;
Totz, J;
Song, Y;
Allam, M;
Sodergren, MH;
Desjardins, AE;
... Davidson, BR; + view all
(2020)
Comparison of manual and semi-automatic registration in augmented reality image-guided liver surgery: a clinical feasibility study.
Surgical Endoscopy
10.1007/s00464-020-07807-x.
(In press).
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Shakir, DCS;
Garcia Peraza Herrera, LC;
Daga, P;
Doel, T;
Clarkson, MJ;
Ourselin, S;
Vercauteren, T;
(2017)
GIFT-Grab: Real-time C++ and Python multi-channel video capture, processing and encoding API.
Journal of Open Research Software
, 5
(1)
, Article 27. 10.5334/jors.169.
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Shapey, J;
Dowrick, T;
Delaunay, R;
Mackle, EC;
Thompson, S;
Janatka, M;
Guichard, R;
... Vercauteren, T; + view all
(2021)
Integrated multi-modality image-guided navigation for neurosurgery: open-source software platform using state-of-the-art clinical hardware.
International Journal of Computer Assisted Radiology and Surgery
10.1007/s11548-021-02374-5.
(In press).
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Song, Y;
Totz, J;
Thompson, S;
Johnsen, S;
Barratt, D;
Schneider, C;
Gurusamy, K;
... Clarkson, MJ; + view all
(2015)
Locally rigid, vessel-based registration for laparoscopic liver surgery.
International Journal of Computer Assisted Radiology and Surgery
, 10
(12)
pp. 1951-1961.
10.1007/s11548-015-1236-8.
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Szczotka, AB;
Shakir, DI;
Clarkson, MJ;
Pereira, SP;
Vercauteren, T;
(2021)
Zero-shot super-resolution with a physically-motivated downsampling kernel for endomicroscopy.
IEEE Transactions on Medical Imaging
10.1109/TMI.2021.3067512.
(In press).
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Szczotka, AB;
Shakir, DI;
Ravì, D;
Clarkson, MJ;
Pereira, SP;
Vercauteren, T;
(2020)
Learning from irregularly sampled data for endomicroscopy super-resolution: a comparative study of sparse and dense approaches.
International Journal of Computer Assisted Radiology and Surgery
10.1007/s11548-020-02170-7.
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Thompson, S;
Dowrick, T;
Ahmad, M;
Xiao, G;
Koo, B;
Bonmati, E;
Kahl, K;
(2020)
SciKit-Surgery: compact libraries for surgical navigation.
International Journal of Computer Assisted Radiology and Surgery
10.1007/s11548-020-02180-5.
(In press).
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Thompson, S;
Dowrick, T;
Xiao, G;
Ramalhinho, J;
Robu, M;
Ahmad, M;
Taylor, D;
(2020)
SnappySonic: An Ultrasound Acquisition Replay Simulator.
Journal of Open Research Software
, 8
(1)
, Article 8. 10.5334/jors.289.
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Thompson, S;
Schneider, C;
Bosi, M;
Gurusamy, K;
Ourselin, S;
Davidson, B;
Hawkes, D;
(2018)
In vivo estimation of target registration errors during augmented reality laparoscopic surgery.
International Journal of Computer Assisted Radiology and Surgery
, 13
(6)
pp. 865-874.
10.1007/s11548-018-1761-3.
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Thompson, S;
Stoyanov, D;
Schneider, C;
Gurusamy, K;
Ourselin, S;
Davidson, B;
Hawkes, D;
(2016)
Hand-eye calibration for rigid laparoscopes using an invariant point.
International Journal of Computer Assisted Radiology and Surgery
, 11
(6)
pp. 1071-1080.
10.1007/s11548-016-1364-9.
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Van Amsterdam, B;
Funke, I;
Edwards, E;
Speidel, S;
Collins, J;
Sridhar, A;
Kelly, J;
... Stoyanov, D; + view all
(2022)
Gesture Recognition in Robotic Surgery with Multimodal Attention.
IEEE Transactions on Medical Imaging
10.1109/TMI.2022.3147640.
(In press).
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van Amsterdam, B;
Clarkson, M;
Stoyanov, D;
(2021)
Gesture Recognition in Robotic Surgery: a Review.
IEEE Transactions on Biomedical Engineering
10.1109/TBME.2021.3054828.
(In press).
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van Berkel, N;
Clarkson, MJ;
Xiao, G;
Dursun, E;
Allam, M;
Davidson, BR;
Blandford, A;
(2020)
Dimensions of ecological validity for usability evaluations in clinical settings.
Journal of Biomedical Informatics
, 110
, Article 103553. 10.1016/j.jbi.2020.103553.
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Whitley, Phoebe;
Creasey, Connor;
Clarkson, Matthew J;
Thompson, Stephen;
(2025)
A Serious Game to Study Reduced Field of View in Keyhole Surgery: Development and Experimental Study.
JMIR Serious Games
, 13
, Article e56269. 10.2196/56269.
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Williams, Simon C;
Khan, Danyal Z;
Bano, Sophia;
Blandford, Ann;
Clarkson, Matthew J;
Costanza, Enrico;
Mazomenos, Evangelos B;
... Marcus, Hani J; + view all
(2025)
A surgical approach to building impactful artificial intelligence.
npj Digital Medicine
, 8
, Article 709. 10.1038/s41746-025-02073-4.
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Xiao, G;
Bonmati, E;
Thompson, S;
Evans, J;
Hipwell, J;
Nikitichev, D;
Gurusamy, K;
... Clarkson, MJ; + view all
(2018)
Electromagnetic tracking in image‐guided laparoscopic surgery: Comparison with optical tracking and feasibility study of a combined laparoscope and laparoscopic ultrasound system.
Medical Physics
, 45
(11)
pp. 5094-5104.
10.1002/mp.13210.
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Yoo, S;
Ramalhinho, J;
Dowrick, T;
Somasundaram, M;
Gurusamy, K;
Davidson, B;
Clarkson, MJ;
(2024)
Can engineers represent surgeons in usability studies? Comparison of results from evaluating augmented reality guidance for laparoscopic surgery.
Computers and Graphics
, 119
, Article 103881. 10.1016/j.cag.2024.01.008.
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Proceedings paper
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Allan, M;
Thompson, S;
Clarkson, MJ;
Ourselin, S;
Hawkes, DJ;
Kelly, J;
Stoyanov, D;
(2014)
2D-3D Pose Tracking of Rigid Instruments in Minimally Invasive Surgery.
In:
Proceedings of the International Conference on Information Processing in Computer-Assisted Interventions.
(pp. pp. 1-10).
Springer: Switzerland: Cham.
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Bonmati Coll, E;
Hu, Y;
Gurusamy, K;
Davidson, B;
Pereira, SP;
Clarkson, MJ;
Barratt, DC;
(2017)
Assessment of Electromagnetic Tracking Accuracy for Endoscopic Ultrasound.
In: Peters, T and Yang, G and Navab, N and Mori, K and Luo, X and Reichl, T and McLeod, J, (eds.)
Computer-Assisted and Robotic Endoscopy.
(pp. pp. 36-47).
Springer International Publishing AG
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Clancy, NT;
Gurusamy, K;
Jones, G;
Davidson, B;
Clarkson, M;
Hawkes, D;
Stoyanov, D;
(2018)
Spectral imaging of thermal damage induced during microwave ablation in the liver.
In:
(Proceedings) 40th International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 17-21 July 2018, Honolulu, Hawaii, USA.
IEEE
(In press).
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Dowrick, Thomas;
Chen, Long;
Ramalhinho, Joao;
Puyal, Juana Gonzalez-Bueno;
Clarkson, Matthew J;
(2023)
Procedurally Generated Colonoscopy and Laparoscopy Data for Improved Model Training Performance.
In: Bhattarai, B and Ali, S and Rau, A and Nguyen, A and Namburete, A and Caramalau, R and Stoyanov, D, (eds.)
Data Engineering in Medical Imaging, DEMI 2023.
(pp. pp. 67-77).
Springer, Cham: Cham, Switzerland.
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Foti, Simone;
Koo, Bongjin;
Stoyanov, Danail;
Clarkson, Matthew J;
(2022)
3D Shape Variational Autoencoder Latent Disentanglement via Mini-Batch Feature Swapping for Bodies and Faces.
In:
Proceedings 2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR).
IEEE
(In press).
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Foti, S;
Koo, B;
Dowrick, T;
Ramalhinho, J;
Allam, M;
Davidson, B;
Stoyanov, D;
(2020)
Intraoperative Liver Surface Completion with Graph Convolutional VAE.
In:
Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, and Graphs in Biomedical Image Analysis.
(pp. pp. 198-207).
Springer: Cham, Switzerland.
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Fu, Yunguan;
Li, Yiwen;
Saeed, Shaheer U;
Clarkson, Matthew J;
Hu, Yipeng;
(2024)
Importance of Aligning Training Strategy with Evaluation for Diffusion Models in 3D Multiclass Segmentation.
In: Mukhopadhyay, A and Oksuz, I and Engelhardt, S and Zhu, D and Yuan, Y, (eds.)
Deep Generative Models (DGM4MICCAI 2023).
(pp. pp. 86-95).
Springer
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Fu, Y;
Robu, MR;
Koo, B;
Schneider, C;
Laarhoven, SV;
Stoyanov, D;
Davidson, B;
... Hu, Y; + view all
More unlabelled data or label more data? A study on semi-supervised laparoscopic image segmentation.
In: Wang, Q.et al., (ed.)
Domain Adaptation and Representation Transfer and Medical Image Learning with Less Labels and Imperfect Data. DART 2019, MIL3ID 2019.
(pp. pp. 173-180).
Springer: Cham.
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Gibson, E;
Giganti, F;
Hu, Y;
Bonmati, E;
Bandula, S;
Gurusamy, K;
Davidson, BR;
... Barratt, DC; + view all
(2017)
Towards image-guided pancreas and biliary endoscopy: Automatic multi-organ segmentation on abdominal CT with dense dilated networks.
In: Descoteaux, M and Maier-Hein, L and Franz, A and Jannin, P and Collins, D and Duchesne, S, (eds.)
(Proceedings) Medical Image Computing and Computer Assisted Intervention − MICCAI 2017.
(pp. pp. 728-736).
Springer: Switzerland, Cham.
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Gibson, E;
Robu, MR;
Thompson, S;
Edwards, P;
Schneider, C;
Gurusamy, K;
Davidson, B;
... Clarkson, MJ; + view all
(2017)
Deep residual networks for automatic segmentation of laparoscopic videos of the liver.
In: Webster, RJ and Fei, B, (eds.)
Medical Imaging 2017: Image-Guided Procedures, Robotic Interventions, and Modeling.
(pp. 101351M1-101351M6).
Society of Photo-Optical Instrumentation Engineers (SPIE): Bellingham, Washington, USA.
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Grimwood, A;
Ramalhinho, J;
Baum, ZMC;
Montaña-Brown, N;
Johnson, GJ;
Hu, Y;
Clarkson, MJ;
... Bonmati, E; + view all
(2021)
Endoscopic Ultrasound Image Synthesis Using a Cycle-Consistent Adversarial Network.
In:
Simplifying Medical Ultrasound. ASMUS 2021.
(pp. pp. 169-178).
Springer: Cham, Switzerland.
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Johnsen, SF;
Taylor, ZA;
Clarkson, M;
Thompson, S;
Hu, M;
Gurusamy, K;
Davidson, B;
... Ourselin, S; + view all
(2012)
Explicit Contact Modelling for Surgical Computer Guidance and Simulation.
In: Holmes, DR and Wong, KH, (eds.)
Proceedings Volume 8316, Medical Imaging 2012: Image-Guided Procedures, Robotic Interventions, and Modeling.
(pp. p. 831623).
SPIE: San Diego, CA, USA.
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Johnsen, SF;
Thompson, S;
Clarkson, MJ;
Modat, M;
Song, Y;
Totz, J;
Gurusamy, K;
... Ourselin, S; + view all
(2015)
Database-Based Estimation of Liver Deformation under Pneumoperitoneum for Surgical Image-Guidance and Simulation.
In: Navab, N and Hornegger, J and Wells, WM and Frangi, AF, (eds.)
Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 : 18th International Conference Proceedings, Part II.
(pp. pp. 450-458).
Springer International Publishing
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Kuzhagaliyev, T;
Clancy, NT;
Janatka, M;
Tchaka, K;
Vasconcelos, F;
Clarkson, MJ;
Gurusamy, KS;
... Stoyanov, D; + view all
(2018)
Augmented Reality needle ablation guidance tool for Irreversible Electroporation in the pancreas.
In:
Proceedings of SPIE 10576, Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling.
(pp. p. 1057613).
SPIE: Houston, Texas, United States.
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Li, Qi;
Shen, Ziyi;
Li, Qian;
Barratt, Dean C;
Dowrick, Thomas;
Clarkson, Matthew J;
Vercauteren, Tom;
(2023)
Privileged anatomical and protocol discrimination in trackerless 3D ultrasound reconstruction.
In:
International Workshop on Advances in Simplifying Medical Ultrasound ASMUS 2023: Simplifying Medical Ultrasound.
(pp. pp. 142-151).
Springer: Cham, Switzerland.
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Li, Qi;
Shen, Ziyi;
Li, Qian;
Barratt, Dean C;
Dowrick, Thomas;
Clarkson, Matthew J;
Vercauteren, Tom;
(2023)
Trackerless Freehand Ultrasound with Sequence Modelling and Auxiliary Transformation Over Past and Future Frames.
In:
2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI).
IEEE: Cartagena, Colombia.
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Montaña-Brown, N;
Saeed, SU;
Abdulaal, A;
Dowrick, T;
Kilic, Y;
Wilkinson, S;
Gao, J;
... Clarkson, MJ; + view all
(2023)
SARAMIS: Simulation Assets for Robotic Assisted and Minimally Invasive Surgery.
In:
Advances in Neural Information Processing Systems 36 (NeurIPS 2023).
NeurIPS
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Mota, Ana M;
Clarkson, Matthew J;
Almeida, Pedro;
Matela, Nuno;
(2022)
Detection of Microcalcifications in Digital Breast Tomosynthesis using Faster R-CNN and 3D Volume Rendering.
In: Gracanin, D and Fred, A and Gamboa, H, (eds.)
Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies - BIOIMAGING.
(pp. pp. 80-89).
SciTePress
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Mota, AM;
Clarkson, MJ;
Orvalho, L;
Almeida, P;
Matela, N;
(2020)
Calculation of transfer functions for volume rendering of breast tomosynthesis imaging.
In: Bosmans, H and Marshall, N and Van Ongeval, C, (eds.)
Proceedings of SPIE - The International Society for Optical Engineering.
SPIE: Leuven, Belgium.
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Olafsdottir, A;
Majed, A;
Butt, D;
Falworth, M;
Clarkson, M;
Thompson, S;
(2022)
SciKit-SurgeryGlenoid, an Open Source Toolkit for Glenoid Version Measurement.
In: Linte, CA and Siewerdsen, JH, (eds.)
Medical Imaging 2022: Image-Guided Procedures, Robotic Interventions, and Modeling.
SPIE: San Diego, CA, USA.
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Pfeiffer, M;
Funke, I;
Robu, MR;
Bodenstedt, S;
Strenger, L;
Engelhardt, S;
Roß, T;
... Speidel, S; + view all
(2019)
Generating large labeled data sets for laparoscopic image processing tasks using unpaired image-to-image translation.
In:
Proceedings of the Generating large labeled data sets for laparoscopic image processing tasks using unpaired image-to-image translation.
(pp. pp. 119-127).
Springer: Shenzhen, China.
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Pocius, M;
Yan, W;
Barratt, DC;
Emberton, M;
Clarkson, MJ;
Hu, Y;
Saeed, SU;
(2024)
Weakly Supervised Localisation of Prostate Cancer Using Reinforcement Learning for Bi-Parametric MR Images.
In:
2024 IEEE International Symposium on Biomedical Imaging (ISBI).
IEEE: Athens, Greece.
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Ramalhinho, J;
Robu, M;
Thompson, S;
Edwards, P;
Schneider, C;
Gurusamy, K;
Hawkes, D;
... Clarkson, MJ; + view all
(2017)
Breathing motion compensated registration of laparoscopic liver ultrasound to CT.
In: Webster, RJ and Fei, B, (eds.)
Proceedings of SPIE 10135 Medical Imaging 2017: Image-Guided Procedures, Robotic Interventions, and Modeling.
(pp. 101352V-1-101352V-9).
SPIE-INT SOC OPTICAL ENGINEERING: Orlando, Florida, United States.
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Ramalhinho, J;
Tregidgo, H;
Allam, M;
Travlou, N;
Gurusamy, K;
Davidson, B;
Hawkes, D;
... Clarkson, M; + view all
(2019)
Registration of Untracked 2D Laparoscopic Ultrasound Liver Images to CT Using Content-Based Retrieval and Kinematic Priors.
In: Wang, Q and Gomez, A and Hutter, J and McLeod, K and Zimmer, V and Zettinig, O and Licandro, R and Robinson, E and Christiaens, D and Abaci Turk, E and Melbourne, A, (eds.)
Smart Ultrasound Imaging and Perinatal, Preterm and Paediatric Image Analysis.
(pp. pp. 11-19).
Springer: Shenzhen, China.
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Sheikh Zeinoddin, M;
Hoque, MI;
Tandogdu, Z;
Shaw, GL;
Clarkson, MJ;
Mazomenos, EB;
Stoyanov, D;
(2026)
Endo-FASt3r: Endoscopic Foundation Model Adaptation for Structure from Motion.
In: Gee, James C and Alexander, Daniel C and Hong, Jaesung and Iglesias, Juan Eugenio and Sudre, Carole H and Venkataraman, Archana and Golland, Polina and Kim, Jong Hyo and Park, Jinah, (eds.)
Medical Image Computing and Computer Assisted Intervention – MICCAI 2025.
(pp. pp. 117-126).
Springer: Cham, Switzerland.
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Sheikh Zeinoddin, M;
Lena, C;
Qu, J;
Carlini, L;
Magro, M;
Kim, S;
De Momi, E;
... Islam, M; + view all
(2025)
DARES: Depth Anything in Robotic Endoscopic Surgery with Self-supervised Vector-LoRA of the Foundation Model.
In: Bue, Alessio Del and Canton, Cristian and Pont-Tuset, Jordi and Tommasi, Tatiana, (eds.)
Computer Vision – ECCV 2024 Workshops. ECCV 2024. Lecture Notes in Computer Science, vol 15633.
Springer, Cham
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Thompson, S;
Dowrick, T;
Ahmad, M;
Opie, J;
Clarkson, M;
(2021)
Are fiducial registration error and target registration error correlated? SciKit-SurgeryFRED for teaching and research.
In:
Proceedings of Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling.
(pp. 115980U).
SPIE: Online Only.
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Thompson, S;
Meurer, Y;
Edwards, P;
Ramalhinho, J;
Robu, MR;
Stoyanov, D;
Ourselin, S;
... Clarkson, MJ; + view all
(2017)
On Pattern Selection for Laparoscope Calibration.
In: Webster, R and Fei, B, (eds.)
Medical Imaging 2017.
Society of Photographic Instrumentation Engineers (SPIE): Orlando, FL, USA.
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Thompson, S;
Totz, J;
Song, Y;
Johnsen, S;
Stoyanov, D;
Ourselin, S;
Gurusamy, K;
... Clarkson, MJ; + view all
(2015)
Accuracy Validation of an Image Guided Laparoscopy System for Liver Resection.
In: Webster, RJ and Yaniv, ZR, (eds.)
Medical Imaging 2015: Image-Guided Procedures, Robotic Interventions and Modeling.
(pp. p. 941509).
Society of Photo-optical Instrumentation Engineers
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Thompson, SA;
Totz, J;
Song, Y;
Johnsen, S;
Stoyanov, D;
Ourselin, S;
Gurusamy, K;
... Clarkson, M; + view all
(2015)
SmartLiver Image Guidance System for Laparoscopic Liver Resection.
In: Yang, GZ and Darzi, A, (eds.)
Proceedings of the Hamlyn Symposium on Medical Robotics 2015.
(pp. pp. 55-56).
Imperial College London: London.
|
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Totz, J;
Thompson, S;
Stoyanov, D;
Gurusamy, K;
Davidson, BR;
Hawkes, DJ;
Clarkson, MJ;
(2014)
Fast semi-dense surface reconstruction from stereoscopic video in laparoscopic surgery.
In:
5th International Conference on Information Processing in Computer-Assisted Interventions: IPCAI 2014.
(pp. pp. 206-215).
Springer: Switzerland.
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Van Amsterdam, B;
Clarkson, MJ;
Stoyanov, D;
(2020)
Multi-Task Recurrent Neural Network for Surgical Gesture Recognition and Progress Prediction.
In:
2020 IEEE International Conference on Robotics and Automation (ICRA).
(pp. pp. 1380-1386).
IEEE: Paris, France.
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Yang, G;
Hipwell, JH;
Clarkson, MJ;
Tanner, C;
Mertzanidou, T;
Gunn, S;
Ourselin, S;
... Arridge, SR; + view all
(2010)
Combined Reconstruction and Registration of Digital Breast Tomosynthesis: Sequential Method versus Iterative Method.
In: Bhalerao, AH and Rajpoot, NM, (eds.)
Proceedings of Medical Image Understanding and Analysis 2010.
(pp. P27-1-P27-5).
Department of Computer Science, University of Warwick: Warwick, UK.
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Yang, G;
Hipwell, JH;
Clarkson, MJ;
Tanner, C;
Mertzanidou, T;
Gunn, S;
Ourselin, S;
... Arridge, SR; + view all
(2010)
Combined Reconstruction and Registration of Digital Breast Tomosynthesis.
In: Marti, J and Oliver, A and Freixenet, J and Marti, R, (eds.)
Proceedings of the International Workshop on Digital Mammography: 10th International Workshop, IWDM 2010, Girona, Catalonia, Spain, June 16-18, 2010.
(pp. 760 - 768).
Springer: Germany: Berlin.
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Yang, Q;
Vercauteren, T;
Fu, Y;
Giganti, F;
Ghavami, N;
Stavrinides, V;
Moore, CM;
... Hu, Y; + view all
(2021)
Morphological Change Forecasting for Prostate Glands using Feature-based Registration and Kernel Density Extrapolation.
In:
Proceedings of the International Symposium on Biomedical Imaging (IEEE ISBI 2021).
IEEE: Virtual conference.
(In press).
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Yi, W;
Stavrinides, V;
Baum, ZMC;
Yang, Q;
Barratt, DC;
Clarkson, MJ;
Hu, Y;
(2023)
Boundary-RL: Reinforcement Learning for Weakly-Supervised Prostate Segmentation in TRUS Images.
In: Cao, Xiaohuan and Xu, Xuanang and Rekik, Islem and Cui, Zhiming and Ouyang, Xi, (eds.)
Machine Learning in Medical Imaging.
(pp. pp. 277-288).
Springer Nature: Cham, Switzerland.
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Conference item
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Thompson, SA;
Schneider, C;
Gurusamy, K;
Hawkes, D;
Davidson, B;
Clarkson, M;
(2016)
Development, Validation, and Modelling of Image Guidance Systems for Surgery.
Presented at: Young Researchers' Futures Meeting, Imperial College, London.
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Poster
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Clarkson, MJ;
Cardoso, MJ;
Modat, M;
Ridgway, GR;
Leung, KK;
Rohrer, JD;
Ourselin, S;
(2011)
A Comparative Study of Voxel and Surface Based Cortical Thickness Methods in Frontotemporal Dementia.
Presented at: Alzheimer's Association International Conference (AAIC): Alzheimer's Imaging Consortium, Paris, France.
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Dowrick, T;
Shapey, J;
Vercauteren, T;
Guichard, R;
Georgoulas, A;
Clarkson, M;
(2020)
Developing 'Skull Base Navigation' Software for Facial Nerve Surgery.
Presented at: RSLondonSouthEast 2020, London, UK.
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Leung, KK;
Ridgway, GR;
Clarkson, MJ;
Nielsen, C;
Ourselin, S;
Fox, N;
(2011)
Automated and consistent brain atrophy estimation using boundary shift integral in longitudinal MRI study.
Presented at: Alzheimer's Association International Conference (AAIC): Alzheimer's Imaging Consortium, Paris, France.
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Ridgway, GR;
Lehmann, M;
Rohrer, J;
Clarkson, M;
Warren, J;
Ourselin, S;
Fox, N;
(2011)
Balanced sensitivity and specificity on unbalanced data using support vector machine re-thresholding.
Presented at: AAICAD Alzheimer's Imaging Consortium, Paris, France.
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Thesis
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Clarkson, Matthew John;
(2000)
Registration of Optical Images to 3D Medical Images.
Doctoral thesis (Ph.D), King's College London.
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