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Number of items: 37.

Article

Hänninen, N; Pulkkinen, A; Leino, A; Tarvainen, T; (2020) Application of diffusion approximation in quantitative photoacoustic tomography in the presence of low-scattering regions. Journal of Quantitative Spectroscopy and Radiative Transfer , 250 , Article 107065. 10.1016/j.jqsrt.2020.107065. Green open access
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Hänninen, N; Pulkkinen, A; Tarvainen, T; (2018) Image Reconstruction with Reliability Assessment in Quantitative Photoacoustic Tomography. Journal of Imaging , 4 (12) , Article 148. 10.3390/jimaging4120148. Green open access
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Hannukainen, A; Hyvönen, N; Majander, H; Tarvainen, T; (2016) Efficient inclusion of total variation type priors in quantitative photoacoustic tomography. SIAM Journal on Imaging Sciences , 9 (3) pp. 1132-1153. 10.1137/15M1051737. Green open access
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Koponen, E; Leskinen, J; Tarvainen, T; Pulkkinen, A; (2019) Acoustic pressure field estimation methods for synthetic schlieren tomography. Journal Of The Acoustical Society Of America , 145 (4) pp. 2470-2479. 10.1121/1.5098943. Green open access
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Lehtikangas, O; Tarvainen, T; Kim, AD; Arridge, SR; (2015) Finite element approximation of the radiative transport equation in a medium with piece-wise constant refractive index. Journal of Computational Physics , 282 pp. 345-359. 10.1016/j.jcp.2014.11.025. Green open access
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Leino, A; Lunttila, T; Mozumder, M; Pulkkinen, A; Tarvainen, T; (2020) Perturbation Monte Carlo Method for Quantitative Photoacoustic Tomography. IEEE Transactions on Medical Imaging 10.1109/tmi.2020.2983129. Green open access
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Leino, AA; Pulkkinen, A; Tarvainen, T; (2019) ValoMC: a Monte Carlo software and MATLAB toolbox for simulating light transport in biological tissue. OSA Continuum , 2 (3) p. 957. 10.1364/osac.2.000957. Green open access
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Lunz, S; Hauptmann, A; Tarvainen, T; Schönlieb, C-B; Arridge, S; (2021) On Learned Operator Correction in Inverse Problems. SIAM Journal on Imaging Sciences , 14 (1) pp. 92-127. 10.1137/20m1338460. Green open access
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Mozumder, M; Hauptmann, A; Nissilä, I; Arridge, SR; Tarvainen, T; (2021) A model-based iterative learning approach for diffuse optical tomography. IEEE Transactions on Medical Imaging 10.1109/TMI.2021.3136461. (In press). Green open access
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Mozumder, M; Tarvainen, T; (2020) Evaluation of temporal moments and Fourier transformed data in time-domain diffuse optical tomography. Journal of the Optical Society of America A , 37 (12) pp. 1845-1856. 10.1364/JOSAA.405541. Green open access
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Mozumder, M; Tarvainen, T; (2020) Time-domain diffuse optical tomography utilizing truncated Fourier series approximation. Journal of the Optical Society of America A: Optics and Image Science, and Vision , 37 (2) pp. 182-191. 10.1364/JOSAA.37.000182. Green open access
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Mozumder, M; Tarvainen, T; Seppanen, A; Nissila, I; Arridge, SR; Kolehmainen, V; (2015) Nonlinear approach to difference imaging in diffuse optical tomography. Journal of Biomedical Optics , 20 (10) , Article 105001. 10.1117/1.JBO.20.10.105001. Green open access
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Nykanen, O; Pulkkinen, A; Tarvainen, T; (2017) Quantitative photoacoustic tomography augmented with surface light measurements. Biomedical Optics Express , 8 (10) pp. 4380-4395. 10.1364/BOE.8.004380. Green open access
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Pulkkinen, A; Cox, BT; Arridge, SR; Goh, H; Kaipio, JP; Tarvainen, T; (2016) Direct Estimation of Optical Parameters From Photoacoustic Time Series in Quantitative Photoacoustic Tomography. Transactions on Medical Imaging , 35 (11) pp. 2497-2508. 10.1109/TMI.2016.2581211. Green open access
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Pulkkinen, A; Cox, BT; Arridge, SR; Kaipio, JP; Tarvainen, T; (2015) Quantitative photoacoustic tomography using illuminations from a single direction. Journal of Biomedical Optics , 20 (3) , Article 036015. 10.1117/1.JBO.20.3.036015. Green open access
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Raumonen, P; Tarvainen, T; (2018) Segmentation of vessel structures from photoacoustic images with reliability assessment. Biomedical Optics Express , 9 (7) pp. 2887-2904. 10.1364/BOE.9.002887. Green open access
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Sahlstrom, T; Pulkkinen, A; Leskinen, J; Tarvainen, T; (2021) Computationally Efficient Forward Operator for Photoacoustic Tomography Based on Coordinate Transformations. IEEE Transactions on Ultrasonics, Ferroelectrics, and Frequency Control 10.1109/TUFFC.2021.3060175. (In press). Green open access
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Sahlstrom, T; Pulkkinen, A; Tick, J; Leskinen, J; Tarvainen, T; (2020) Modeling of Errors due to Uncertainties in Ultrasound Sensor Locations in Photoacoustic Tomography. IEEE Transactions on Medical Imaging 10.1109/tmi.2020.2966297. (In press). Green open access
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Tamminen, JP; Tarvainen, T; Siltanen, S; (2017) The D-bar Method for Diffuse Optical Tomography: a computational study. Experimental Mathematics , 26 (2) pp. 225-240. 10.1080/10586458.2016.1157775. Green open access
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Tarvainen, Tanja; Cox, Ben; (2024) Quantitative photoacoustic tomography: modeling and inverse problems. Journal of Biomedical Optics , 29 (Suppl 1) , Article S11509. 10.1117/1.JBO.29.S1.S11509. Green open access
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Tick, J; Pulkkinen, A; Lucka, F; Ellwood, R; Cox, BT; Kaipio, JP; Arridge, SR; (2018) Three dimensional photoacoustic tomography in Bayesian framework. The Journal of the Acoustical Society of America , 144 (4) pp. 2061-2071. 10.1121/1.5057109. Green open access
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Tick, J; Pulkkinen, A; Tarvainen, T; (2020) Modelling of errors due to speed of sound variations in photoacoustic tomography using a Bayesian framework. Biomedical Physics & Engineering Express , 6 (1) , Article 015003. 10.1088/2057-1976/ab57d1. Green open access
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Tick, J; Pulkkinen, A; Tarvainen, T; (2016) Image reconstruction with uncertainty quantification in photoacoustic tomography. Journal of the Acoustical Society of America , 139 (4) pp. 1951-1961. 10.1121/1.4945990. Green open access
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Toivanen, JM; Tarvainen, T; Huttunen, JMJ; Savolainen, T; Pulkkinen, A; Orlande, HRB; Kaipio, JP; (2017) Thermal tomography utilizing truncated Fourier series approximation of the heat diffusion equation. International Journal of Heat and Mass Transfer , 108 (Part A) pp. 860-867. 10.1016/j.ijheatmasstransfer.2016.12.060. Green open access
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Xu, W; Leskinen, J; Tick, J; Happonen, E; Tarvainen, T; Lehto, V-P; (2020) Black Mesoporous Silicon as a Contrast Agent for LED-Based 3D Photoacoustic Tomography. ACS Applied Materials & Interfaces , 12 (5) pp. 5456-5461. 10.1021/acsami.9b18844. Green open access
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Proceedings paper

Koponen, E; Leskinen, J; Tarvainen, T; Pulkkinen, A; (2019) Characterization of ultrasound fields using a potential optical flow based synthetic schlieren tomography. In: Optics InfoBase Conference Papers. OSA: Munich, Germany. Green open access
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Leskinen, J; Pulkkinen, A; Tick, J; Tarvainen, T; (2019) Photoacoustic tomography setup using LED illumination. In: Ntziachristos, V and Zemp, R, (eds.) Opto-Acoustic Methods and Applications in Biophotonics IV. SPIE: Washington, USA. Green open access
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Mozumder, M; Tarvainen, T; (2020) A truncated Fourier-transform based approach for time-domain diffuse optical tomography. In: Proceedings of Microscopy Histopathology and Analytics 2020. Optical Society of America (OSA): Washington, D.C., USA. Green open access
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Pulkkinen, A; Cox, BT; Arridge, SR; Kaipio, JP; Tarvainen, T; (2017) Estimation and uncertainty quantification of optical properties directly from the photoacoustic time series. In: Photons Plus Ultrasound: Imaging and Sensing 2017. (pp. 100643N-1). SPIE Green open access
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Pulkkinen, A; Cox, BT; Arridge, SR; Kaipio, JP; Tarvainen, T; (2016) Bayesian parameter estimation in spectral quantitative photoacoustic tomography. In: Oraevsky, AA and Wang, LV, (eds.) Photons Plus Ultrasound: Imaging and Sensing 2016. SPIE: San Francisco, CA, USA. Green open access
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Sahlström, T; Pulkkinen, A; Tick, J; Leskinen, J; Tarvainen, T; (2020) Modelling of uncertainties in ultrasound sensor locations in photoacoustic tomography. In: Oraevsky, A and Wang, L, (eds.) Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE: San Francisco, CA, USA. Green open access
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Tarvainen, T; Pulkkinen, A; Cox, BT; Arridge, SR; (2017) Utilising the radiative transfer equation in quantitative photoacoustic tomography. In: Photons Plus Ultrasound: Imaging and Sensing 2017. (pp. 100643E-1-100643E-8). SPIE Green open access
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Tarvainen, T; Pulkkinen, A; Cox, BT; Kaipio, JP; Arridge, SR; (2016) Image reconstruction with noise and error modelling in quantitative photoacoustic tomography. In: Oraevsky, AA and Wang, LV, (eds.) Photons Plus Ultrasound: Imaging and Sensing 2016. SPIE: San Francisco, CA, USA. Green open access
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Tarvainen, T; Sahlstrom, T; Tick, J; Pulkkinen, A; (2019) Modelling of errors and uncertainties in photoacoustic tomography using a Bayesian framework. In: Optics InfoBase Conference Papers. OSA: Munich, Germany. Green open access
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Tick, J; Pulkkinen, A; Lucka, F; Ellwood, R; Cox, BT; Arridge, SR; Tarvainen, T; (2018) Photoacoustic image reconstruction in Bayesian framework. In: Oraevsky,, Alexander A. and Wang, Lihong V., (eds.) Proceedings Volume 10494, Photons Plus Ultrasound: Imaging and Sensing 2018; 1049450 (2018). SPIE: San Francisco, California, United States. Green open access
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Tick, J; Pulkkinen, A; Tarvainen, T; (2018) Photoacoustic image reconstruction with uncertainty quantification. In: IFMBE Proceedings - EMBEC & NBC 2017. (pp. pp. 113-116). Springer: Singapore. Green open access
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Tick, J; Pulkkinen, A; Tarvainen, T; (2017) Bayesian approach to image reconstruction in photoacoustic tomography. In: Photons Plus Ultrasound: Imaging and Sensing 2017. (pp. 100643M-1-100643M-7). SPIE Green open access
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This list was generated on Wed Jan 28 21:55:28 2026 GMT.