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Number of items: 88.
Article
Adeyelu, Tolulope Tosin;
Moya-Garcia, Aurelio A;
Orengo, Christine;
(2022)
Exploiting protein family and protein network data to identify novel drug targets for bladder cancer.
Oncotarget
, 13
(1)
pp. 105-117.
10.18632/oncotarget.28175.
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Adoni, Kish R;
Cunningham, Debbie L;
Heath, John K;
Leney, Aneika C;
(2022)
FAIMS Enhances the Detection of PTM Crosstalk Sites.
Journal of Proteome Research
, 21
(4)
pp. 930-939.
10.1021/acs.jproteome.1c00721.
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Ahn, Minkoo;
Włodarski, Tomasz;
Mitropoulou, Alkistis;
Chan, Sammy HS;
Sidhu, Haneesh;
Plessa, Elena;
Becker, Thomas A;
... Christodoulou, John; + view all
(2022)
Author Correction: Modulating co-translational protein folding by rational design and ribosome engineering.
[Corrigendum].
Nature Communications
, 13
(1)
, Article 5441. 10.1038/s41467-022-33270-4.
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Ahn, Minkoo;
Włodarski, Tomasz;
Mitropoulou, Alkistis;
Chan, Sammy HS;
Sidhu, Haneesh;
Plessa, Elena;
Becker, Thomas A;
... Christodoulou, John; + view all
(2022)
Modulating co-translational protein folding by rational design and ribosome engineering.
Nature Communications
, 13
, Article 4243. 10.1038/s41467-022-31906-z.
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Bagnéris, Claire;
Senthil Kumar, Swathi L;
Baratchian, Mehdi;
Britt, Hannah M;
Assafa, Tufa E;
Thalassinos, Konstantinos;
Collins, Mary K;
(2022)
Mechanistic insights into the activation of the IKK kinase complex by the Kaposi’s Sarcoma Herpes virus oncoprotein vFLIP.
Journal of Biological Chemistry
, 298
(6)
, Article 102012. 10.1016/j.jbc.2022.102012.
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Bakx, Julia AM;
Biebricher, Andreas S;
King, Graeme A;
Christodoulis, Panagiotis;
Sarlós, Kata;
Bizard, Anna H;
Hickson, Ian D;
... Peterman, Erwin JG; + view all
(2022)
Duplex DNA and BLM regulate gate opening by the human TopoIIIα-RMI1-RMI2 complex.
Nature Communications
, 13
, Article 584. 10.1038/s41467-022-28082-5.
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Ballandras-Colas, A;
Chivukula, V;
Gruszka, DT;
Shan, Z;
Singh, PK;
Pye, VE;
McLean, RK;
... Cherepanov, P; + view all
(2022)
Multivalent interactions essential for lentiviral integrase function.
Nature Communications
, 13
(1)
, Article 2416. 10.1038/s41467-022-29928-8.
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Bhattacharya, Amrita;
Shukla, Vaibhav Kumar;
Kachariya, Nitin;
Preeti;
Sehrawat, Parveen;
Kumar, Ashutosh;
(2022)
Disorder in the Human Skp1 Structure is the Key to its Adaptability to Bind Many Different Proteins in the SCF Complex Assembly.
Journal of Molecular Biology
, 434
(21)
, Article 167830. 10.1016/j.jmb.2022.167830.
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Blombach, Fabian;
Smollett, Kathy L;
Werner, Finn;
(2022)
ChIP-Seq Occupancy Mapping of the Archaeal Transcription Machinery.
Methods in Molecular Biology
, 2522
pp. 209-222.
10.1007/978-1-0716-2445-6_13.
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Bolik-Coulon, Nicolas;
Hansen, D Flemming;
Kay, Lewis E;
(2022)
Optimizing frequency sampling in CEST experiments.
Journal of Biomolecular NMR
, 76
(5-6)
pp. 167-183.
10.1007/s10858-022-00403-2.
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Bordin, Nicola;
Dallago, Christian;
Heinzinger, Michael;
Kim, Stephanie;
Littmann, Maria;
Rauer, Clemens;
Steinegger, Martin;
... Orengo, Christine; + view all
(2022)
Novel machine learning approaches revolutionize protein knowledge.
Trends in Biochemical Sciences
10.1016/j.tibs.2022.11.001.
(In press).
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Borges, Adair;
Lou, YL;
Sadcheva, R;
Al-Shayeb, B;
Penev, PI;
Jaffe, AL;
Lei, S;
... Banfield, JF; + view all
(2022)
Widespread stop-codon recoding in bacteriophages may regulate translation of lytic genes.
Nature Microbiology
, 7
pp. 918-927.
10.1038/s41564-022-01128-6.
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Britt, Hannah M;
Cragnolini, Tristan;
Khatun, Suniya;
Hatimy, Abubakar;
James, Juliette;
Page, Nathanael;
Williams, Jonathan P;
... Vissers, Johannes PC; + view all
(2022)
Evaluation of Acquisition Modes for Semi-Quantitative Analysis by Targeted and Untargeted Mass Spectrometry.
Rapid Communications in Mass Spectrometry
, 36
(13)
, Article e9308. 10.1002/rcm.9308.
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Britt, HM;
Cragnolini, T;
Thalassinos, K;
(2022)
Integration of Mass Spectrometry Data for Structural Biology.
Chemical Reviews
, 122
(8)
pp. 7952-7986.
10.1021/acs.chemrev.1c00356.
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Cackett, G;
Portugal, R;
Matelska, D;
Dixon, L;
Werner, F;
(2022)
African Swine Fever Virus and host response - transcriptome profiling of the Georgia 2007/1 strain and porcine macrophages.
Journal of Virology
10.1128/jvi.01939-21.
(In press).
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Chan, Sammy HS;
Włodarski, Tomasz;
Streit, Julian O;
Cassaignau, Anaïs ME;
Woodburn, Lauren F;
Ahn, Minkoo;
Freiherr von Sass, Georg Johannes;
... Christodoulou, John; + view all
(2022)
The ribosome stabilizes partially folded intermediates of a nascent multi-domain protein.
Nature Chemistry
10.1038/s41557-022-01004-0.
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Crisci, MA;
Corsini, PM;
Bordin, N;
Chen, LX;
Banfield, JF;
Santini, JM;
(2022)
Detection and enumeration of Lak megaphages in microbiome samples by endpoint and quantitative PCR.
STAR Protocols
, 3
(1)
10.1016/j.xpro.2021.101029.
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Cui, J;
Purton, S;
Baganz, F;
(2022)
Characterisation of a simple 'hanging bag' photobioreactor for low-cost cultivation of microalgae.
Journal of Chemical Technology & Biotechnology
, 97
(3)
pp. 608-619.
10.1002/jctb.6985.
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de Crécy-Lagard, Valérie;
Amorin de Hegedus, Rocio;
Arighi, Cecilia;
Babor, Jill;
Bateman, Alex;
Blaby, Ian;
Blaby-Haas, Crysten;
... Xu, Jin; + view all
(2022)
A roadmap for the functional annotation of protein families: a community perspective.
Database
10.1093/database/baac062.
(In press).
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Downton, P;
Sanna, F;
Maidstone, R;
Poolman, TM;
Hayter, EA;
Dickson, SH;
Ciccone, NA;
... Ray, DW; + view all
(2022)
Chronic inflammatory arthritis drives systemic changes in circadian energy metabolism.
Proceedings of the National Academy of Sciences of the United States of America
, 119
(18)
, Article e2112781119. 10.1073/pnas.2112781119.
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Du, Tianhao;
Bogush, Anna;
Mašek, Ondřej;
Purton, Saul;
Campos, Luiza C;
(2022)
Algae, biochar and bacteria for acid mine drainage (AMD) remediation: A review.
Chemosphere
, Article 135284. 10.1016/j.chemosphere.2022.135284.
(In press).
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Duan, Xiaowen;
Norris, Dougall M;
Humphrey, Sean;
Yang, Pengyi;
Cooke, Kristen C;
Bultitude, Will P;
Parker, Ben;
... Fazakerley, Daniel J; + view all
(2022)
Trafficking regulator of GLUT4-1 (TRARG1) is a GSK3 substrate.
Biochemical Journal
10.1042/BCJ20220153.
(In press).
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Efthymiou, Christos;
Print, Emily HT;
Simmons, Anna;
Perkins, Stephen J;
(2022)
Analysis of 363 variants in the coagulation Factor 5 gene via an interactive web database reveals new insights into FV deficiency and FV Leiden.
TH Open
10.1055/a-1987-5978.
(In press).
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Eldrid, C;
Zloh, M;
Fotinou, C;
Yelland, T;
Yu, L;
Mota, F;
Selwood, DL;
(2022)
VEGFA, B, C: Implications of the C-Terminal Sequence Variations for the Interaction with Neuropilins.
Biomolecules
, 12
(3)
, Article 372. 10.3390/biom12030372.
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Eldrid, Charles;
Cragnolini, Tristan;
Ben-Younis, Aisha;
Zou, Junjie;
Raleigh, Daniel P;
Thalassinos, Konstantinos;
(2022)
Linking Gas-Phase and Solution-Phase Protein Unfolding via Mobile Proton Simulations.
Analytical Chemistry
, 94
(46)
pp. 16113-16121.
10.1021/acs.analchem.2c03352.
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Fets, Louise;
Bevan, Natalie;
Nunes, Patrícia M;
Campos, Sebastien;
Dos Santos, Mariana Silva;
Sherriff, Emma;
MacRae, James I;
... Anastasiou, Dimitrios; + view all
(2022)
MOG analogues to explore the MCT2 pharmacophore, α-ketoglutarate biology and cellular effects of N-oxalylglycine.
Communications Biology
, 5
, Article 877. 10.1038/s42003-022-03805-y.
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Fets, Louise;
Bevan, Natalie;
Nunes, Patrícia M;
Campos, Sebastien;
Dos Santos, Mariana Silva;
Sherriff, Emma;
MacRae, James I;
... Anastasiou, Dimitrios; + view all
(2022)
Publisher Correction: MOG analogues to explore the MCT2 pharmacophore, α-ketoglutarate biology and cellular effects of N-oxalylglycine.
[Corrigendum].
Communications Biology
, 5
, Article 1019. 10.1038/s42003-022-03922-8.
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Flomm, Felix J;
Soh, Timothy K;
Schneider, Carola;
Wedemann, Linda;
Britt, Hannah M;
Thalassinos, Konstantinos;
Pfitzner, Søren;
... Bosse, Jens B; + view all
(2022)
Intermittent bulk release of human cytomegalovirus.
PLoS Pathogens
, 18
(8)
, Article e1010575. 10.1371/journal.ppat.1010575.
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Garduño-González, KA;
Peña-Benavides, SA;
Araújo, RG;
Castillo-Zacarías, C;
Melchor-Martínez, EM;
Oyervides-Muñoz, MA;
Sosa-Hernández, JE;
... Parra-Saldívar, R; + view all
(2022)
Current challenges for modern vaccines and perspectives for novel treatment alternatives.
Journal of Drug Delivery Science and Technology
, 70
, Article 103222. 10.1016/j.jddst.2022.103222.
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Gathercole, Laura L;
Nikolaou, Nikolaos;
Harris, Shelley E;
Arvaniti, Anastasia;
Poolman, Toryn M;
Hazlehurst, Jonathan M;
Kratschmar, Denise V;
... Tomlinson, Jeremy W; + view all
(2022)
AKR1D1 knockout mice develop a sex dependent metabolic phenotype.
Journal of Endocrinology
10.1530/JOE-21-0280.
(In press).
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Gromiha, M Michael;
Orengo, Christine;
Sowdhamini, Ramanathan;
Thornton, Janet;
(2022)
Srinivasan (1962-2021) in Bioinformatics and beyond.
Bioinformatics
10.1093/bioinformatics/btac054.
(In press).
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Guimaraes Koch, Sofia S;
Thorpe, Robin;
Kawasaki, Nana;
Lefranc, Marie-Paule;
Malan, Sarel;
Martin, Andrew CR;
Mignot, Gilles;
... Balocco, Raffaella; + view all
(2022)
International nonproprietary names for monoclonal antibodies: an evolving nomenclature system.
mAbs
, 14
(1)
, Article 2075078. 10.1080/19420862.2022.2075078.
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Han, Yuchen;
Kinfu, Birhanu M;
Blombach, Fabian;
Cackett, Gwenny;
Zhang, Hongli;
Pérez-García, Pablo;
Krohn, Ines;
... Streit, Wolfgang R; + view all
(2022)
A novel metagenome-derived viral RNA polymerase and its application in a cell-free expression system for metagenome screening.
Scientific Reports
, 12
(1)
, Article 17882. 10.1038/s41598-022-22383-x.
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Hasenahuer, Marcia A;
Sanchis-Juan, Alba;
Laskowski, Roman A;
Baker, James A;
Stephenson, James D;
Orengo, Christine A;
Lucy Raymond, F;
(2022)
Mapping the Constrained Coding Regions in the human genome to their corresponding proteins.
Journal of Molecular Biology
, Article 167892. 10.1016/j.jmb.2022.167892.
(In press).
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Heinzinger, Michael;
Littmann, Maria;
Sillitoe, Ian;
Bordin, Nicola;
Orengo, Christine;
Rost, Burkhard;
(2022)
Contrastive learning on protein embeddings enlightens midnight zone.
NAR Genomics and Bioinformatics
, 4
(2)
, Article lqac043. 10.1093/nargab/lqac043.
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Hertweck, Arnulf;
Vila de Mucha, Maria;
Barber, Paul R;
Dagil, Robert;
Porter, Hayley;
Ramos, Andres;
Lord, Graham M;
(2022)
The TH1 cell lineage-determining transcription factor T-bet suppresses TH2 gene expression by redistributing GATA3 away from TH2 genes.
Nucleic Acids Research
, Article gkac258. 10.1093/nar/gkac258.
(In press).
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Hoqani, UA;
León, R;
Purton, S;
(2022)
Over-expression of a cyanobacterial gene for 1-deoxy-D-xylulose-5-phosphate synthase in the chloroplast of Chlamydomonas reinhardtii perturbs chlorophyll: carotenoid ratios.
Journal of King Saud University - Science
, 34
(6)
, Article 102141. 10.1016/j.jksus.2022.102141.
(In press).
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Hunter, Ann Louise;
Adamson, Antony;
Poolman, Toryn;
Grudzien, Magdalena;
Loudon, Andrew;
Ray, David;
Bechtold, David A;
(2022)
HaloChIP-seq for Antibody-Independent Mapping of Mouse Transcription Factor Cistromes In Vivo.
bio-protocol
, 12
(13)
, Article e4460. 10.21769/bioprotoc.4460.
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Ing, Gabriel;
Hartley, Andrew M;
Pinotsis, Nikos;
Maréchal, Amandine;
(2022)
Cryo-EM structure of a monomeric yeast S. cerevisiae complex IV isolated with maltosides: Implications in supercomplex formation.
Biochimica et Biophysica Acta (BBA) - Bioenergetics
, 1863
(7)
, Article 148591. 10.1016/j.bbabio.2022.148591.
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Ireland, S;
Martin, A;
(2022)
GraphQL for the Delivery of Bioinformatics Web APIs and Application to ZincBind.
Bioinformatics Advances
10.1080/13632434.2022.2095996.
(In press).
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Jackson, Harry O;
Taunt, Henry N;
Mordaka, Paweł M;
Kumari, Sujata;
Smith, Alison G;
Purton, Saul;
(2022)
CpPosNeg: A positive‐negative selection strategy allowing multiple cycles of marker‐free engineering of the Chlamydomonas plastome.
Biotechnology Journal
, 17
(10)
, Article 2200088. 10.1002/biot.202200088.
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Karunanithy, Gogulan;
Yuwen, Tairan;
Kay, Lewis E;
Hansen, D Flemming;
(2022)
Towards autonomous analysis of chemical exchange saturation transfer experiments using deep neural networks.
Journal of Biomolecular NMR
10.1007/s10858-022-00395-z.
(In press).
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Kausas, Marius;
Esposito, Diego;
Rittinger, Katrin;
Fraternali, Franca;
(2022)
Characterisation of HOIP RBR E3 ligase conformational dynamics using integrative modelling.
Scientific Reports
, 12
(1)
, Article 15201. 10.1038/s41598-022-18890-6.
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Keren, R;
Méheust, R;
Santini, JM;
Thomas, A;
West-Roberts, J;
Banfield, JF;
Alvarez-Cohen, L;
(2022)
Global genomic analysis of microbial biotransformation of arsenic highlights the importance of arsenic methylation in environmental and human microbiomes.
Computational and Structural Biotechnology Journal
10.1016/j.csbj.2021.12.040.
(In press).
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Khetan, R;
Curtis, R;
Deane, CM;
Thorling Hadsund, J;
Kar, U;
Krawczyk, K;
Kuroda, D;
... Martin, A; + view all
(2022)
Current advances in biopharmaceutical informatics: guidelines, impact and challenges in the computational developability assessment of antibody therapeutics.
mAbs
, 14
(1)
, Article 2020082. 10.1080/19420862.2021.2020082.
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Kilpatrick, AM;
Rahman, F;
Anjum, A;
Shome, S;
Andalib, KMS;
Banik, S;
Chowdhury, SF;
... Welch, L; + view all
(2022)
Characterizing domain-specific open educational resources by linking ISCB Communities of Special Interest to Wikipedia.
Bioinformatics
, 38
(1)
i19-i27.
10.1093/bioinformatics/btac236.
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King, GA;
Spakman, D;
Peterman, EJG;
Wuite, GJL;
(2022)
Generating Negatively Supercoiled DNA Using Dual-Trap Optical Tweezers.
Optical Tweezers : Methods in Molecular Biology book series
, 2478
pp. 243-272.
10.1007/978-1-0716-2229-2_9.
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Kostyuk, AI;
Tossounian, M-A;
Panova, AS;
Thauvin, M;
Raevskii, RI;
Ezeriņa, D;
Wahni, K;
... Belousov, VV; + view all
(2022)
Hypocrates is a genetically encoded fluorescent biosensor for (pseudo)hypohalous acids and their derivatives.
Nature Communications
, 13
(1)
, Article 171. 10.1038/s41467-021-27796-2.
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Lalaurie, Christophe J;
Splevins, Andrew;
Barata, Teresa S;
Bunting, Karen A;
Higazi, Daniel R;
Zloh, Mire;
Spiteri, Valentina A;
... Dalby, Paul A; + view all
(2022)
Elucidation of critical pH-dependent structural changes in Botulinum Neurotoxin E.
J Struct Biol
, 214
(3)
, Article 107876. 10.1016/j.jsb.2022.107876.
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Lam, SD;
Waman, VP;
Fraternali, F;
Orengo, C;
Lees, J;
(2022)
Structural and energetic analyses of SARS-CoV-2 N-terminal domain characterise sugar binding pockets and suggest putative impacts of variants on COVID-19 transmission.
Computational and Structural Biotechnology Journal
, 20
pp. 6302-6316.
10.1016/j.csbj.2022.11.004.
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Le Huray, Kyle IP;
Bunney, Tom D;
Pinotsis, Nikos;
Kalli, Antreas C;
Katan, Matilda;
(2022)
Characterization of the membrane interactions of phospholipase Cγ reveals key features of the active enzyme.
Science Advances
, 8
(25)
, Article eabp9688. 10.1126/sciadv.abp9688.
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Macé, K;
Meir, A;
Lukoyanova, N;
Liu, L;
Chetrit, D;
Hospenthal, MK;
Roy, CR;
(2022)
The proteins DotY and DotZ modulate the dynamics and localization of the type IVB coupling complex of Legionella pneumophila.
Molecular Microbiology
, 117
(2)
pp. 307-319.
10.1111/mmi.14847.
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Macé, Kévin;
Vadakkepat, Abhinav K;
Redzej, Adam;
Lukoyanova, Natalya;
Oomen, Clasien;
Braun, Nathalie;
Ukleja, Marta;
... Waksman, Gabriel; + view all
(2022)
Cryo-EM structure of a type IV secretion system.
Nature
10.1038/s41586-022-04859-y.
(In press).
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Malanchuk, OM;
Bdzhola, AV;
Tykhonkova, IO;
Gout, IT;
Filonenko, VV;
(2022)
Monoclonal antibodies to Coenzyme A.
Biopolymers & Cell
, 38
(4)
pp. 215-223.
10.7124/bc.000A7F.
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Mallaby, Jessica;
Ng, Joseph;
Stewart, Alex;
Sinclair, Emma;
Dunn-Walters, Deborah;
Hershberg, Uri;
(2022)
Chickens, more than humans, focus the diversity of their immunoglobulin genes on the complementarity-determining region but utilise amino acids, indicative of a more cross-reactive antibody repertoire.
Frontiers in Immunology
, 13
, Article 837246. 10.3389/fimmu.2022.837246.
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Mapstone, Lydia J;
Leite, Mara N;
Purton, Saul;
Crawford, Ian A;
Dartnell, Lewis;
(2022)
Cyanobacteria and microalgae in supporting human habitation on Mars.
Biotechnology Advances
, 59
, Article 107946. 10.1016/j.biotechadv.2022.107946.
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Mapstone, Lydia J;
Taunt, Henry N;
Cui, Jing;
Purton, Saul;
Brooks, Tom GR;
(2022)
ADA: an open-source software platform for plotting and analysis of data from laboratory photobioreactors.
Applied Phycology
, 3
(1)
pp. 16-26.
10.1080/26388081.2021.2023632.
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Monteleone, Stefania;
Fedorov, Dmitri G;
Townsend-Nicholson, Andrea;
Southey, Michelle;
Bodkin, Michael;
Heifetz, Alexander;
(2022)
Hotspot Identification and Drug Design of Protein–Protein Interaction Modulators Using the Fragment Molecular Orbital Method.
Journal of Chemical Information and Modeling
, 62
(16)
pp. 3784-3799.
10.1021/acs.jcim.2c00457.
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Nicheperovich, Alina;
Townsend-Nicholson, Andrea;
(2022)
Towards Precision Oncology: The Role of Smoothened and Its Variants in Cancer.
Journal of Personalized Medicine
, 12
(10)
, Article 1648. 10.3390/jpm12101648.
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Pilotto, Simona;
Werner, Finn;
(2022)
How to Shut Down Transcription in Archaea during Virus Infection.
Microorganisms
, 10
(9)
, Article 1824. 10.3390/microorganisms10091824.
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Poolman, Toryn M;
Townsend-Nicholson, Andrea;
Cain, Amanda;
(2022)
Teaching genomics to life science undergraduates using cloud computing platforms with open datasets.
Biochemistry and Molecular Biology Education
, 50
(5)
pp. 446-449.
10.1002/bmb.21646.
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Potterton, A;
Heifetz, A;
Townsend-Nicholson, A;
(2022)
Predicting Residence Time of GPCR Ligands with Machine Learning.
Methods in Molecular Biology
, 2390
pp. 191-205.
10.1007/978-1-0716-1787-8_8.
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Rengachari, Srinivasan;
Schilbach, Sandra;
Kaliyappan, Thangavelu;
Gouge, Jerome;
Zumer, Kristina;
Schwarz, Juliane;
Urlaub, Henning;
... Cramer, Patrick; + view all
(2022)
Structural basis of SNAPc-dependent snRNA transcription initiation by RNA polymerase II.
Nature Structural & Molecular Biology
, 29
(12)
pp. 1159-1169.
10.1038/s41594-022-00857-w.
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Rojano, Elena;
Jabato, Fernando M;
Perkins, James R;
Cordoba-Caballero, Jose;
Garcia-Criado, Federico;
Sillitoe, Ian;
Orengo, Christine;
... Seoane-Zonjic, Pedro; + view all
(2022)
Assigning protein function from domain-function associations using DomFun.
BMC Bioinformatics
, 23
(1)
, Article 43. 10.1186/s12859-022-04565-6.
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Romano, Lisa EL;
Aw, Wen Yih;
Hixson, Kathryn M;
Novoselova, Tatiana V;
Havener, Tammy M;
Howell, Stefanie;
Taylor-Blake, Bonnie;
... Wolter, Justin M; + view all
(2022)
Multi-omic profiling reveals the ataxia protein sacsin is required for integrin trafficking and synaptic organization.
Cell Reports
, 41
(5)
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Characterisation of the African Swine Fever Virus Transcription System.
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Molecular insights into complement activation by multidisciplinary biophysical approaches.
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Investigating the PKM2-dependent regulation of glycolysis by amino acids.
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Investigation of chemically constructed bispecific antibodies and their conjugates for the treatment of type 1 diabetes and cancer.
Doctoral thesis (Ph.D), University College London (UCL).
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