Browse by UCL people
Group by: Type | Date
Jump to: Article | Book chapter
Number of items: 55.
Article
Abu-Toamih Atamni, HJ;
Kontogianni, G;
Binenbaum, I;
Mott, R;
Himmelbauer, H;
Lehrach, H;
Chatziioannou, A;
(2019)
Hepatic gene expression variations in response to high-fat diet-induced impaired glucose tolerance using RNAseq analysis in collaborative cross mouse population.
Mammalian Genome
, 30
(9-10)
pp. 260-275.
10.1007/s00335-019-09816-1.
|
|
Abu-Toamih Atamni, HJ;
Ziner, Y;
Mott, R;
Wolf, L;
Iraqi, FA;
(2017)
Glucose tolerance female-specific QTL mapped in collaborative cross mice.
Mammalian Genome
, 28
(1-2)
pp. 20-30.
10.1007/s00335-016-9667-2.
|
 |
|
Abu-Toamih-Atamni, HJ;
Lone, IM;
Binenbaum, I;
Mott, R;
Pilalis, E;
Chatziioannou, A;
Iraqi, FA;
(2024)
Mapping novel QTL and fine mapping of previously identified QTL associated with glucose tolerance using the collaborative cross mice.
Mammalian Genome
, 35
pp. 31-55.
10.1007/s00335-023-10025-0.
|
|
Atamni, HJ;
Botzman, M;
Mott, R;
Gat-Viks, I;
Iraqi, FA;
(2016)
Mapping liver fat female-dependent quantitative trait loci in collaborative cross mice.
Mammalian Genome
, 27
(11)
pp. 565-573.
10.1007/s00335-016-9658-3.
|
|
Baumgarten, Lukas;
Pieper, Bjorn;
Song, Baoxing;
Mane, Sébastien;
Lempe, Janne;
Lamb, Jonathan;
Cooke, Elizabeth L;
... Tsiantis, Miltos; + view all
(2023)
Pan-European study of genotypes and phenotypes in the Arabidopsis relative Cardamine hirsuta reveals how adaptation, demography, and development shape diversity patterns.
PLOS Biology
, 21
(7)
, Article e3002191. 10.1371/journal.pbio.3002191.
|
|
Binenbaum, I;
Atamni, HA-T;
Fotakis, G;
Kontogianni, G;
Koutsandreas, T;
Pilalis, E;
Mott, R;
... Chatziioannou, AA; + view all
(2020)
Container-aided integrative QTL and RNA-seq analysis of Collaborative Cross mice supports distinct sex-oriented molecular modes of response in obesity.
BMC Genomics
, 21
(1)
, Article 761. 10.1186/s12864-020-07173-x.
|
|
|
Camargo, AV;
Mackay, I;
Mott, R;
Han, J;
Doonan, JH;
Askew, K;
Corke, F;
... Bentley, AR; + view all
(2018)
Functional Mapping of Quantitative Trait Loci (QTLs) Associated With Plant Performance in a Wheat MAGIC Mapping Population.
Frontiers in Plant Science
, 9
, Article 887. 10.3389/fpls.2018.00887.
|
|
|
Camargo, AV;
Mott, R;
Gardner, KA;
Mackay, IJ;
Corke, F;
Doonan, JH;
Kim, JT;
(2016)
Determining phenological patterns associated with the onset of senescence in a wheat MAGIC mapping population.
Frontiers in Plant Science
, 7
, Article 1540. 10.3389/fpls.2016.01540.
|
|
|
Crouse, Wesley L;
Das, Swapan Kumar;
Le, Thu;
Keele, Gregory;
Holl, Katie;
Seshie, Osborne;
Craddock, Ann;
... Solberg Woods, Leah C; + view all
(2022)
Transcriptome-wide analyses of adipose tissue in outbred rats reveal genetic regulatory mechanisms relevant for human obesity.
Physiological Genomics
, 54
(6)
pp. 206-219.
10.1152/physiolgenomics.00172.2021.
|
|
Cui, Leilei;
Yang, Bin;
Xiao, Shijun;
Gao, Jun;
Baud, Amelie;
Graham, Delyth;
McBride, Martin;
... Huang, Lusheng; + view all
(2023)
Dominance is common in mammals and is associated with trans-acting gene expression and alternative splicing.
Genome Biology
, 24
, Article 215. 10.1186/s13059-023-03060-2.
|
|
|
Cui, L;
Yang, B;
Pontikos, N;
Mott, R;
Huang, L;
(2020)
ADDO: a comprehensive toolkit to detect, classify and visualise additive and non-additive Quantitative Trait Loci.
Bioinformatics
, 36
(5)
pp. 1517-1521.
10.1093/bioinformatics/btz786.
|
|
Curtis, D;
Coelewij, L;
Liu, S-H;
Humphrey, J;
Mott, R;
(2018)
Weighted Burden Analysis of Exome-Sequenced Case-Control Sample Implicates Synaptic Genes in Schizophrenia Aetiology.
Behavior Genetics
, 48
(3)
pp. 198-208.
10.1007/s10519-018-9893-3.
|
|
Davies, RW;
Flint, J;
Myers, S;
Mott, R;
(2016)
Rapid genotype imputation from sequence without reference panels.
Nature Genetics
, 48
(8)
pp. 965-969.
10.1038/ng.3594.
|
|
Dorman, A;
Binenbaum, I;
Abu-Toamih Atamni, HJ;
Chatziioannou, A;
Tomlinson, I;
Mott, R;
Iraqi, FA;
(2021)
Genetic mapping of novel modifiers for ApcMin induced intestinal polyps’ development using the genetic architecture power of the collaborative cross mice.
BMC Genomics
, 22
, Article 566. 10.1186/s12864-021-07890-x.
|
|
|
Fradgley, Nick;
Gardner, Keith A;
Bentley, Alison R;
Howell, Phil;
Mackay, Ian J;
Scott, Michael F;
Mott, Richard;
(2023)
Multi-trait ensemble genomic prediction and simulations of recurrent selection highlight importance of complex trait genetic architecture for long-term genetic gains in wheat.
in silico Plants
, 5
(1)
, Article diad002. 10.1093/insilicoplants/diad002.
|
|
Gan, X;
Hay, A;
Kwantes, M;
Haberer, G;
Hallab, A;
Dello Ioio, R;
Hofhuis, H;
... Tsiantis, M; + view all
(2016)
The Cardamine hirsuta genome offers insight into the evolution of morphological diversity.
Nature Plants
, 2
(11)
, Article 16167. 10.1038/NPLANTS.2016.167.
|
|
Imprialou, M;
Kahles, A;
Steffen, JG;
Osborne, EJ;
Gan, X;
Lempe, J;
Bhomra, A;
... Mott, R; + view all
(2017)
Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits.
Genetics
, 205
(4)
pp. 1425-1441.
10.1534/genetics.116.192823.
|
|
|
Juliusdottir, T;
Banasik, K;
Robertson, NR;
Mott, R;
McCarthy, MI;
(2018)
Toppar: An interactive browser for viewing association study results.
Bioinformatics
, 34
(11)
pp. 1922-1924.
10.1093/bioinformatics/btx840.
|
|
|
Kaisaki, PJ;
Otto, GW;
Argoud, K;
Collins, SC;
Wallis, RH;
Wilder, SP;
Yau, AC;
... Gauguier, D; + view all
(2016)
Transcriptome Profiling in Rat Inbred Strains and Experimental Cross Reveals Discrepant Genetic Architecture of Genome-Wide Gene Expression.
G3: Genes, Genomes, Genetics
10.1534/g3.116.033274.
(In press).
|
 |
|
Karp, NA;
Mason, J;
Beaudet, AL;
Benjamini, Y;
Bower, L;
Braun, RE;
Brown, SDM;
... White, JK; + view all
(2017)
Prevalence of sexual dimorphism in mammalian phenotypic traits.
Nature Communications
, 8
, Article 15475. 10.1038/ncomms15475.
|
|
|
Kawakatsu, T;
Huang, S-SC;
Jupe, F;
Sasaki, E;
Schmitz, RJ;
Urich, MA;
Castanon, R;
... Ecker, JR; + view all
(2016)
Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions.
Cell
, 166
(2)
pp. 492-505.
10.1016/j.cell.2016.06.044.
|
|
Keele, GR;
Prokop, JW;
He, H;
Holl, K;
Littrell, J;
Deal, A;
Francic, S;
... Woods, LCS; + view all
(2018)
Genetic Fine-Mapping and Identification of Candidate Genes and Variants for Adiposity Traits in Outbred Rats.
Obesity
, 26
(1)
pp. 213-222.
10.1002/oby.22075.
|
|
Krohn, J;
Speed, D;
Palme, R;
Touma, C;
Mott, R;
Flint, J;
(2014)
Genetic interactions with sex make a relatively small contribution to the heritability of complex traits in mice.
PLOS One
, 9
(5)
, Article e96450. 10.1371/journal.pone.0096450.
|
|
Le, Thu H;
Crouse, Wesley L;
Keele, Gregory R;
Holl, Katie;
Seshie, Osborne;
Tschannen, Michael;
Craddock, Ann;
... Solberg Woods, Leah C; + view all
(2023)
Genetic Mapping of Multiple Metabolic Traits Identifies Novel Genes for Adiposity, Lipids and Insulin Secretory Capacity in Outbred Rats.
Diabetes
, 72
(1)
pp. 135-148.
10.2337/db22-0252.
|
|
Levy, R;
Levet, C;
Cohen, K;
Freeman, M;
Mott, R;
Iraqi, F;
Gabet, Y;
(2020)
A genome-wide association study in mice reveals a role for Rhbdf2 in skeletal homeostasis.
Scientific Reports
, 10
, Article 3286. 10.1038/s41598-020-60146-8.
|
|
|
Lilue, J;
Doran, AG;
Fiddes, IT;
Abrudan, M;
Armstrong, J;
Bennett, R;
Chow, W;
... Keane, TM; + view all
(2018)
Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci.
Nature Genetics
, 50
(11)
pp. 1574-1583.
10.1038/s41588-018-0223-8.
|
|
Lorè, NI;
Sipione, B;
He, G;
Strug, LJ;
Atamni, HJ;
Dorman, A;
Mott, R;
... Bragonzi, A; + view all
(2020)
Collaborative Cross Mice Yield Genetic Modifiers for Pseudomonas aeruginosa Infection in Human Lung Disease.
mBio
, 11
(2)
10.1128/mBio.00097-20.
|
|
|
Matsumoto, Y;
Goto, T;
Nishino, J;
Nakaoka, H;
Tanave, A;
Takano-Shimizu, T;
Mott, RF;
(2017)
Selective breeding and selection mapping using a novel wild-derived heterogeneous stock of mice revealed two closely-linked loci for tameness.
Scientific Reports
, 7
, Article 4607. 10.1038/s41598-017-04869-1.
|
|
|
McIntyre, RE;
Nicod, J;
Daniela Robles-Espinoza, C;
Maciejowski, J;
Cai, N;
Hill, J;
Verstraten, R;
... Adams, DJ; + view all
(2016)
A Genome-Wide Association Study for Regulators of Micronucleus Formation in Mice.
G3
, 6
(8)
pp. 2343-2354.
10.1534/g3.116.030767.
|
|
|
Misra, G;
Badoni, S;
Parween, S;
Singh, RK;
Leung, H;
Ladejobi, O;
Mott, R;
(2020)
Genome-wide association coupled gene to gene interaction studies unveil novel epistatic targets among major effect loci impacting rice grain chalkiness.
Plant Biotechnology Journal
10.1111/pbi.13516.
(In press).
|
|
|
Molenhuis, RT;
Bruining, H;
Brandt, MJV;
Van Soldt, PE;
Atamni, HJA-T;
Burbach, JPH;
Iraqi, FA;
... Kas, MJH; + view all
(2018)
Modeling the quantitative nature of neurodevelopmental disorders using Collaborative Cross mice.
Molecular Autism
, 9
, Article 63. 10.1186/s13229-018-0252-2.
|
|
|
Mont, C;
Hernandez Pilego, P;
Cañete, T;
Oliveras, I;
Río-Álamos, C;
Blázquez, G;
López-Aumatell, R;
... Mott, R; + view all
(2018)
Coping-Style Behavior Identified by a Survey of Parent-of-Origin Effects in the Rat.
G3: Genes, Genomes, Genetics
, 8
(10)
pp. 3283-3291.
10.1534/g3.118.200489.
|
|
|
Morgan, Andrew P;
Gatti, Daniel M;
Najarian, Maya L;
Keane, Thomas M;
Galante, Raymond J;
Pack, Allan I;
Mott, Richard;
... de Villena, Fernando P-M; + view all
(2017)
Structural Variation Shapes the Landscape of Recombination in Mouse.
Genetics
, 206
(2)
pp. 603-619.
10.1534/genetics.116.197988.
|
|
Mott, R;
(2022)
Epigenetic interactions.
EBioMedicine
, 75
, Article 103804. 10.1016/j.ebiom.2021.103804.
|
|
|
Mott, R;
Fischer, C;
Prins, P;
Davies, RW;
(2020)
Private Genomes and Public SNPs: Homomorphic Encryption of Genotypes and Phenotypes for Shared Quantitative Genetics.
Genetics
, 215
(2)
pp. 359-372.
10.1534/genetics.120.303153.
|
|
|
Mott, R;
Yuan, W;
Kaisaki, P;
Gan, X;
Cleak, J;
Edwards, A;
Baud, A;
(2014)
The Architecture of Parent-of-Origin Effects in Mice.
CELL
, 156
(1-2)
pp. 332-342.
10.1016/j.cell.2013.11.043.
|
|
|
Nachshon, A;
Atamni, HJA-T;
Steuerman, Y;
Sheikh-Hamed, R;
Dorman, A;
Mott, R;
Dohm, JC;
... Gat-Viks, I; + view all
(2016)
Dissecting the Effect of Genetic Variation on the Hepatic Expression of Drug Disposition Genes across the Collaborative Cross Mouse Strains.
Frontiers in Genetics
, 7
, Article 172. 10.3389/fgene.2016.00172.
|
|
|
Nashef, A;
Qabaja, R;
Salaymeh, Y;
Botzman, M;
Munz, M;
Dommisch, H;
Krone, B;
... Haddad, YH; + view all
(2018)
Integration of Murine and Human Studies for Mapping Periodontitis Susceptibility.
Journal of Dental Research
, 97
(5)
pp. 537-546.
10.1177/0022034517744189.
|
|
|
Nicod, J;
Davies, RW;
Cai, N;
Hassett, C;
Goodstadt, L;
Cosgrove, C;
Yee, BK;
... Flint, J; + view all
(2016)
Genome-wide association of multiple complex traits in outbred mice by ultra-low-coverage sequencing.
Nature Genetics
, 48
(8)
pp. 912-918.
10.1038/ng.3595.
|
|
Otto, GW;
Kaisaki, PJ;
Brial, F;
Le Lay, A;
Cazier, J-B;
Mott, R;
Gauguier, D;
(2019)
Conserved properties of genetic architecture of renal and fat transcriptomes in rat models of insulin resistance.
Disease Models & Mechanisms
, 12
(7)
10.1242/dmm.038539.
|
|
|
Rabanal, FA;
Mandakova, T;
Soto-Jimenez, LM;
Greenhalgh, R;
Parrott, DL;
Lutzmayer, S;
Steffen, JG;
... Nordborg, M; + view all
(2017)
Epistatic and allelic interactions control expression of ribosomal RNA gene clusters in Arabidopsis thaliana.
Genome Biology
, 18
, Article 75. 10.1186/s13059-017-1209-z.
|
|
|
Rabanal, FA;
Nizhynska, V;
Mandáková, T;
Novikova, PY;
Lysak, MA;
Mott, R;
Nordborg, M;
(2017)
Unstable Inheritance of 45S rRNA Genes in Arabidopsis thaliana.
G3: Genes, Genomes, Genetics
, 7
(3)
10.1534/g3.117.040204.
|
|
|
Ruzicka, F;
Hill, MS;
Pennell, TM;
Flis, I;
Ingleby, FC;
Mott, R;
Fowler, K;
... Reuter, M; + view all
(2019)
Genome-wide sexually antagonistic variants reveal long-standing constraints on sexual dimorphism in fruit flies.
PLoS Biology
, 17
(4)
, Article e3000244. 10.1371/journal.pbio.3000244.
|
|
|
Scott, MF;
Botigué, LR;
Brace, S;
Stevens, CJ;
Mullin, VE;
Stevenson, A;
Thomas, MG;
... Mott, R; + view all
(2019)
A 3,000-year-old Egyptian emmer wheat genome reveals dispersal and domestication history.
[Letter].
Nature plants
, 5
pp. 1120-1128.
10.1038/s41477-019-0534-5.
|
|
Scott, MF;
Fradgley, N;
Bentley, AR;
Brabbs, T;
Corke, F;
Gardner, KA;
Horsnell, R;
... Cockram, J; + view all
(2021)
Limited haplotype diversity underlies polygenic trait architecture across 70 years of wheat breeding.
Genome Biology
, 22
(1)
, Article 137. 10.1186/s13059-021-02354-7.
|
|
|
Scott, MF;
Ladejobi, O;
Amer, S;
Bentley, AR;
Biernaskie, J;
Boden, SA;
Clark, M;
... Mott, R; + view all
(2020)
Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding.
Heredity
10.1038/s41437-020-0336-6.
(In press).
|
|
|
Song, B;
Mott, R;
Gan, X;
(2018)
Recovery of novel association loci in Arabidopsis thaliana and Drosophila melanogaster through leveraging INDELs association and integrated burden test.
PLoS Genetics
, 14
(10)
, Article e1007699. 10.1371/journal.pgen.1007699.
|
 |
|
The 1001 Genomes Consortium;
(2016)
1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana.
Cell
, 166
(2)
pp. 481-491.
10.1016/j.cell.2016.05.063.
|
|
|
Thudi, Mahendar;
Samineni, Srinivasan;
Li, Wenhao;
Boer, Martin P;
Roorkiwal, Manish;
Yang, Zuoquan;
Ladejobi, Funmi;
... Varshney, Rajeev K; + view all
(2023)
Whole genome resequencing and phenotyping of MAGIC population for high resolution mapping of drought tolerance in chickpea.
The Plant Genome
, Article e20333. 10.1002/tpg2.20333.
(In press).
|
 |
|
Yang, Chin Jian;
Ladejobi, Olufunmilayo;
Mott, Richard;
Powell, Wayne;
Mackay, Ian;
(2022)
Analysis of historical selection in winter wheat.
Theoretical and Applied Genetics
10.1007/s00122-022-04163-3.
(In press).
|
|
|
Zhang, J;
Malo, D;
Mott, R;
Panthier, J-J;
Montagutelli, X;
Jaubert, J;
(2018)
Identification of new loci involved in the host susceptibility to Salmonella Typhimurium in collaborative cross mice.
BMC Genomics
, 19
, Article 303. 10.1186/s12864-018-4667-0.
|
|
|
Zhao, Tianjing;
Wang, Fangyi;
Mott, Richard;
Dekkers, Jack;
Cheng, Hao;
(2023)
Using encrypted genotypes and phenotypes for collaborative genomic analyses to maintain data confidentiality.
Genetics
, Article iyad210. 10.1093/genetics/iyad210.
(In press).
|
|
Zhong, Z;
Bailey, M;
Kim, YI;
Afsharyan, NP;
Parker, B;
Arathoon, L;
Li, X;
... Mott, R; + view all
(2025)
The distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana resolve the Central Dogma’s information flow.
Genome Biology
, 26
, Article 319. 10.1186/s13059-025-03741-0.
|
|
|
Zou, J;
Gopalakrishnan, S;
Parker, CC;
Nicod, J;
Mott, R;
Cai, N;
Lionikas, A;
... Flint, J; + view all
(2021)
Analysis of independent cohorts of outbred CFW mice reveals novel loci for behavioral and physiological traits and identifies factors determining reproducibility.
G3: Genes | Genomes | Genetics
, Article jkab394. 10.1093/g3journal/jkab394.
(In press).
|
|
Book chapter
|
Woods, LCS;
Mott, R;
(2017)
Heterogeneous Stock Populations for Analysis of Complex Traits.
In: Schughart, K and Williams, RW, (eds.)
Systems Genetics: Methods and Protocols.
(pp. 31-44).
Humana Press: New York, NY, USA.
|
