Browse by UCL people
Group by: Type | Date
Number of items: 71.
2025
Biswas, Dhruva;
Kanu, Nnennaya;
Swanton, Charles;
(2025)
Prospective validation of ORACLE, a clonal expression biomarker associated with survival of patients with lung adenocarcinoma
adenocarcinoma.
Nature Cancer
10.1038/s43018-024-00883-1.
(In press).
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Black, James RM;
Bartha, Gabor;
Abbott, Charles W;
Boyle, Sean M;
Karasaki, Takahiro;
Li, Bailiang;
Chen, Rui;
... Swanton, Charles; + view all
(2025)
Ultrasensitive ctDNA detection for preoperative disease stratification in early-stage lung adenocarcinoma.
Nature Medicine
, 31
pp. 70-76.
10.1038/s41591-024-03216-y.
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Kanu, Nnennaya;
Lu, Wei-Ting;
Swanton, Charles;
Bartek, Jiri;
(2025)
TRACERx analysis identifies a role for FAT1 in regulating chromosomal instability and whole-genome doubling via Hippo signalling.
Nature Cell Biology
, 27
(1)
pp. 154-168.
10.1038/s41556-024-01558-w.
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2024
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Bailey, Chris;
Pich, Oriol;
Thol, Kerstin;
Watkins, Thomas BK;
Luebeck, Jens;
Rowan, Andrew;
Stavrou, Georgia;
... Swanton, Charles; + view all
(2024)
Origins and impact of extrachromosomal DNA.
Nature
, 635
(8037)
pp. 193-200.
10.1038/s41586-024-08107-3.
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Boire, Adrienne;
Burke, Katy;
Cox, Thomas R;
Guise, Theresa;
Jamal-Hanjani, Mariam;
Janowitz, Tobias;
Kaplan, Rosandra;
... Sahai, Erik; + view all
(2024)
Why do patients with cancer die?
Nature Reviews Cancer
, 24
(8)
pp. 578-589.
10.1038/s41568-024-00708-4.
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Enfield, Katey SS;
Colliver, Emma;
Lee, Claudia SY;
Magness, Alastair;
Moore, David A;
Sivakumar, Monica;
Grigoriadis, Kristiana;
... Angelova, Mihaela; + view all
(2024)
Spatial Architecture of Myeloid and T Cells Orchestrates Immune Evasion and Clinical Outcome in Lung Cancer.
Cancer Discovery
, 14
(1)
pp. 1-30.
10.1158/2159-8290.CD-23-1380.
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Frankell, Alexander M;
Dietzen, Michelle;
Al Bakir, Maise;
Lim, Emilia L;
Karasaki, Takahiro;
Ward, Sophia;
Veeriah, Selvaraju;
... Swanton, Charles; + view all
(2024)
The evolution of lung cancer and impact of subclonal selection in TRACERx (vol 616, pg 525, 2023).
[Corrigendum].
Nature
, 631
, Article E15. 10.1038/s41586-024-07738-w.
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Geukens, Tatjana;
Maetens, Marion;
Hooper, Jody E;
Oesterreich, Steffi;
Lee, Adrian;
Miller, Lori;
Atkinson, Jenny M;
... Desmedt, Christine; + view all
(2024)
Research autopsy programmes in oncology: shared experience from 14 centres across the world.
The Journal of Pathology
10.1002/path.6271.
(In press).
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Hobor, S;
Al Bakir, M;
Hiley, CT;
Skrzypski, M;
Frankell, AM;
Bakker, B;
Watkins, TBK;
... Clipson, A; + view all
(2024)
Mixed responses to targeted therapy driven by chromosomal instability through p53 dysfunction and genome doubling.
Nature Communications
, 15
, Article 4871. 10.1038/s41467-024-47606-9.
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Hynds, Robert E;
Huebner, Ariana;
Pearce, David R;
Hil, Mark S;
Akarca, Ayse U;
Moore, David A;
Ward, Sophia;
... Swanton, Charles; + view all
(2024)
Representation of genomic intratumor heterogeneity in multi-region non-small cell lung cancer patient-derived xenograft models.
Nature Communications
, 15
, Article 4653. 10.1038/s41467-024-47547-3.
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Lucas, Olivia;
Ward, Sophia;
Zaidi, Rija;
Bunkum, Abigail;
Frankell, Alexander M;
Moore, David A;
Hill, Mark S;
... Zaccaria, Simone; + view all
(2024)
Characterizing the evolutionary dynamics of cancer proliferation in single-cell clones with SPRINTER.
Nature Genetics
10.1038/s41588-024-01989-z.
(In press).
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Pan, Xiaoxi;
AbdulJabbar, Khalid;
Coelho-Lima, Jose;
Grapa, Anca-Ioana;
Zhang, Hanyun;
Cheung, Alvin Ho Kwan;
Baena, Juvenal;
... Moore, David A; + view all
(2024)
The artificial intelligence-based model ANORAK improves histopathological grading of lung adenocarcinoma.
Nature Cancer
10.1038/s43018-023-00694-w.
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Puttick, Clare;
Jones, Thomas P;
Leung, Michelle M;
Galvez-Cancino, Felipe;
Liu, Jiali;
Varas-Godoy, Manuel;
Rowan, Andrew;
... Mcgranahan, Nicholas; + view all
(2024)
MHC Hammer reveals genetic and non-genetic HLA disruption in cancer evolution.
Nature Genetics
, 56
(10)
pp. 2121-2131.
10.1038/s41588-024-01883-8.
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Scalera, Stefano;
Ricciuti, Biagio;
Marinelli, Daniele;
Mazzotta, Marco;
Cipriani, Laura;
Bon, Giulia;
Schiavoni, Giulia;
... Maugeri-Saccà, Marcello; + view all
(2024)
Transcriptional phenocopies of deleterious KEAP1 mutations correlate with survival outcomes in lung cancer treated with immunotherapy.
Clinical Cancer Research
10.1158/1078-0432.CCR-24-0626.
(In press).
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2023
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Abbosh, Christopher;
Frankell, Alexander M;
Harrison, Thomas;
Kisistok, Judit;
Garnett, Aaron;
Johnson, Laura;
Veeriah, Selvaraju;
... Swanton, Charles; + view all
(2023)
Tracking early lung cancer metastatic dissemination in TRACERx using ctDNA.
Nature
, 616
(7957)
pp. 553-562.
10.1038/s41586-023-05776-4.
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Al Bakir, Maise;
Huebner, Ariana;
Martínez-Ruiz, Carlos;
Grigoriadis, Kristiana;
Watkins, Thomas BK;
Pich, Oriol;
Moore, David A;
... Swanton, Charles; + view all
(2023)
The evolution of non-small cell lung cancer metastases in TRACERx.
Nature
10.1038/s41586-023-05729-x.
(In press).
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Caswell, Deborah R;
Gui, Philippe;
Mayekar, Manasi K;
Law, Emily K;
Pich, Oriol;
Bailey, Chris;
Boumelha, Jesse;
... Swanton, Charles; + view all
(2023)
The role of APOBEC3B in lung tumor evolution and targeted cancer therapy resistance.
Nature Genetics
10.1038/s41588-023-01592-8.
(In press).
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Ferrer, M;
Anthony, TG;
Ayres, JS;
Biffi, G;
Brown, JC;
Caan, BJ;
Cespedes Feliciano, EM;
... Janowitz, T; + view all
(2023)
Cachexia: A systemic consequence of progressive, unresolved disease.
Cell
, 186
(9)
pp. 1824-1845.
10.1016/j.cell.2023.03.028.
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Frankell, AM;
Dietzen, M;
Al Bakir, M;
Lim, EL;
Karasaki, T;
Ward, S;
Veeriah, S;
... Gilbert, K; + view all
(2023)
The evolution of lung cancer and impact of subclonal selection in TRACERx.
Nature
, 616
pp. 525-533.
10.1038/s41586-023-05783-5.
|
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Hasan, AM Mahedi;
Cremaschi, Paolo;
Wetterskog, Daniel;
Jayaram, Anuradha;
Wong, Stephen Q;
Williams, Scott;
Pasam, Anupama;
... Attard, Gerhardt; + view all
(2023)
Copy number architectures define treatment-mediated selection of lethal prostate cancer clones.
Nature Communications
, 14
, Article 4823. 10.1038/s41467-023-40315-9.
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Hessey, Sonya;
Fessas, Petros;
Zaccaria, Simone;
Jamal-Hanjani, Mariam;
Swanton, Charles;
(2023)
Insights into the metastatic cascade through research autopsies.
Trends Cancer
10.1016/j.trecan.2023.03.002.
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Hill, William;
Lim, Emilia L.;
Weeden, Clare E.;
Lee, Claudia;
Augustine, Marcellus;
Chen, Kezhong;
Kuan, Feng-Che;
(2023)
Lung adenocarcinoma promotion by air pollutants.
Nature
, 616
pp. 159-167.
10.1038/s41586-023-05874-3.
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Jamal-Hanjani, Mariam;
(2023)
Body composition and lung cancer-associated cachexia in TRACERx.
Nature Medicine
, 29
pp. 846-858.
10.1038/s41591-023-02232-8.
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Jamal-Hanjani, Mariam;
(2023)
High resolution phylogenetic ctDNA tracking predicts relapse risk and metastatic dissemination patterns in early-stage lung cancer.
Nature
(In press).
|
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Karasaki, T;
Moore, DA;
Veeriah, S;
Naceur-Lombardelli, C;
Toncheva, A;
Magno, N;
Ward, S;
... Jamal-Hanjani, M; + view all
(2023)
Evolutionary characterization of lung adenocarcinoma morphology in TRACERx.
Nature Medicine
, 29
pp. 833-845.
10.1038/s41591-023-02230-w.
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Karasaki, Takahiro;
Moore, David A;
Jamal-Hanjani, Mariam;
(2023)
Clinicogenomic landscape of morphological evolution in lung adenocarcinoma.
Nature Medicine
, 29
(4)
pp. 795-796.
10.1038/s41591-023-02231-9.
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Martínez-Ruiz, C;
Black, JRM;
Puttick, C;
Hill, MS;
Demeulemeester, J;
Larose Cadieux, E;
Thol, K;
... McGranahan, N; + view all
(2023)
Genomic–transcriptomic evolution in lung cancer and metastasis.
Nature
, 616
pp. 543-552.
10.1038/s41586-023-05706-4.
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McDonald, James;
Sayers, Judith;
Anker, Stefan D;
Arends, Jann;
Balstad, Trude;
Baracos, Vickie;
Brown, Leo;
... Cancer Cachexia Endpoints Working, Group; + view all
(2023)
Physical function endpoints in cancer cachexia clinical trials: Systematic Review 1 of the cachexia endpoints series.
Journal of Cachexia, Sarcopenia and Muscle
10.1002/jcsm.13321.
(In press).
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Muñoz-Ruiz, Miguel;
Llorian, Miriam;
D'Antuono, Rocco;
Pavlova, Anna;
Mavrigiannaki, Anna Maria;
McKenzie, Duncan;
García-Cassani, Bethania;
... Hayday, Adrian C; + view all
(2023)
Interferon-g-dependent interactions between tissue-intrinsic γδ T cells and tissue-infiltrating CD8 T cells limit acute contact dermatitis.
Journal of Allergy and Clinical Immunology
10.1016/j.jaci.2023.07.015.
(In press).
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Ng, Kevin W;
Boumelha, Jesse;
Enfield, Katey SS;
Almagro, Jorge;
Cha, Hongui;
Pich, Oriol;
Karasaki, Takahiro;
... Kassiotis, George; + view all
(2023)
Antibodies against endogenous retroviruses promote lung cancer immunotherapy.
Nature
10.1038/s41586-023-05771-9.
(In press).
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Spain, Lavinia;
Coulton, Alexander;
Lobon, Irene;
Rowan, Andrew;
Schnidrig, Desiree;
Shepherd, Scott TC;
Shum, Benjamin;
... Turajlic, Samra; + view all
(2023)
Late-Stage Metastatic Melanoma Emerges through a Diversity of Evolutionary Pathways.
Cancer Discovery
, 13
(6)
pp. 1364-1385.
10.1158/2159-8290.CD-22-1427.
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Zhang, Hanyun;
AbdulJabbar, Khalid;
Moore, David A;
Akarca, Ayse;
Enfield, Katey SS;
Jamal-Hanjani, Mariam;
Raza, Shan E Ahmed;
... Yuan, Yinyin; + view all
(2023)
Spatial Positioning of Immune Hotspots Reflects the Interplay between B and T Cells in Lung Squamous Cell Carcinoma.
Cancer Research
, 83
(9)
pp. 1410-1425.
10.1158/0008-5472.CAN-22-2589.
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2022
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Chen, Kezhong;
Yang, Airong;
Carbone, David P;
Kanu, Nnennaya;
Liu, Ke;
Wang, Ruiru;
Nie, Yuntao;
... Wang, Jun; + view all
(2022)
Spatiotemporal genomic analysis reveals distinct molecular features in recurrent stage I non-small cell lung cancers.
Cell Reports
, 40
(2)
, Article 111047. 10.1016/j.celrep.2022.111047.
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Hung, King L;
Luebeck, Jens;
Dehkordi, Siavash R;
Colón, Caterina I;
Li, Rui;
Wong, Ivy Tsz-Lo;
Coruh, Ceyda;
... Chang, Howard Y; + view all
(2022)
Targeted profiling of human extrachromosomal DNA by CRISPR-CATCH.
Nature Genetics
10.1038/s41588-022-01190-0.
(In press).
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Jamal-Hanjani, Mariam;
(2022)
Combining a national research autopsy programme with computational approaches to study cancer evolution and metastasis: an interview with Mariam Jamal-Hanjani.
Communications Biology
, 5
, Article 629. 10.1038/s42003-022-03550-2.
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Wu, Yin;
Biswas, Dhruva;
Usaite, Ieva;
Angelova, Mihaela;
Boeing, Stefan;
Karasaki, Takahiro;
Veeriah, Selvaraju;
... Swanton, Charles; + view all
(2022)
A local human Vδ1 T cell population is associated with survival in nonsmall-cell lung cancer.
Nature Cancer
, 3
pp. 696-709.
10.1038/s43018-022-00376-z.
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2021
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Au, L;
Hatipoglu, E;
Robert de Massy, M;
Litchfield, K;
Beattie, G;
Rowan, A;
Schnidrig, D;
... TRACERx Renal Consortium; + view all
(2021)
Determinants of anti-PD-1 response and resistance in clear cell renal cell carcinoma.
Cancer Cell
, 39
pp. 1497-1518.
10.1016/j.ccell.2021.10.001.
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Bailey, C;
Black, JRM;
Reading, JL;
Litchfield, K;
Turajlic, S;
McGranahan, N;
Jamal-Hanjani, M;
(2021)
Tracking Cancer Evolution through the Disease Course.
Cancer Discovery
, 11
(4)
pp. 916-932.
10.1158/2159-8290.CD-20-1559.
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Balestrini, S;
Koepp, MJ;
Gandhi, S;
Rickman, HM;
Yen Shin, G;
Houlihan, CF;
Anders-Cannon, J;
... Sisodiya, SM; + view all
(2021)
Clinical outcomes of COVID-19 in long-term care facilities for people with epilepsy.
Epilepsy & Behavior
, 115
, Article 107602. 10.1016/j.yebeh.2020.107602.
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Bentham, R;
Litchfield, K;
Watkins, TBK;
Lim, EL;
Rosenthal, R;
Martinez-Ruiz, C;
Hiley, CT;
... McGranahan, N; + view all
(2021)
Using DNA sequencing data to quantify T cell fraction and therapy response.
Nature
, 597
pp. 555-560.
10.1038/s41586-021-03894-5.
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Hellewell, J;
Russell, TW;
SAFER Investigators and Field Study Team, ,;
Crick COVID-19 Consortium, ,;
CMMID COVID-19 working group, ,;
Beale, R;
Kelly, G;
... Kucharski, AJ; + view all
(2021)
Estimating the effectiveness of routine asymptomatic PCR testing at different frequencies for the detection of SARS-CoV-2 infections.
BMC Medicine
, 19
(1)
, Article 106. 10.1186/s12916-021-01982-x.
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Lindsay, CR;
Shaw, EC;
Moore, DA;
Rassl, D;
Jamal-Hanjani, M;
Steele, N;
Naheed, S;
... Kerr, KM; + view all
(2021)
Large cell neuroendocrine lung carcinoma: consensus statement from The British Thoracic Oncology Group and the Association of Pulmonary Pathologists.
British Journal of Cancer
10.1038/s41416-021-01407-9.
(In press).
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Moore, DA;
Benafif, S;
Poskitt, B;
Argue, S;
Lee, SM;
Ahmad, T;
Papadatos-Pastos, D;
... Forster, MD; + view all
(2021)
Optimising fusion detection through sequential DNA and RNA molecular profiling of non-small cell lung cancer.
Lung Cancer
, 161
pp. 55-59.
10.1016/j.lungcan.2021.08.008.
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Venkatesan, S;
Angelova, M;
Puttick, C;
Zhai, H;
Caswell, DR;
Lu, W-T;
Dietzen, M;
... Consortium, T; + view all
(2021)
Induction of APOBEC3 Exacerbates DNA Replication Stress and Chromosomal Instability in Early Breast and Lung Cancer Evolution.
Cancer Discovery
, 11
(10)
pp. 2456-2473.
10.1158/2159-8290.CD-20-0725.
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2020
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AbdulJabbar, K;
Raza, SEA;
Rosenthal, R;
Jamal-Hanjani, M;
Veeriah, S;
Akarca, A;
Lund, T;
... Yuan, Y; + view all
(2020)
Geospatial immune variability illuminates differential evolution of lung adenocarcinoma.
Nature Medicine
, 26
pp. 1054-1062.
10.1038/s41591-020-0900-x.
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Aitken, J;
Ambrose, K;
Barrell, S;
Beale, R;
Bineva-Todd, G;
Biswas, D;
Byrne, R;
... Wu, M; + view all
(2020)
Scalable and robust SARS-CoV-2 testing in an academic center.
Nature Biotechnology
, 38
(8)
pp. 927-931.
10.1038/s41587-020-0588-y.
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Ghorani, E;
Reading, JL;
Henry, JY;
Massy, MRD;
Rosenthal, R;
Turati, V;
Joshi, K;
... Quezada, SA; + view all
(2020)
The T cell differentiation landscape is shaped by tumour mutations in lung cancer.
Nature Cancer
, 1
(5)
pp. 546-561.
10.1038/s43018-020-0066-y.
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Guillotin, D;
Taylor, AR;
Platé, M;
Mercer, PF;
Edwards, LM;
Haggart, R;
Miele, G;
... Chambers, RC; + view all
(2020)
Transcriptome analysis of IPF fibroblastic foci identifies key pathways involved in fibrogenesis.
Thorax
, 76
(1)
pp. 73-82.
10.1136/thoraxjnl-2020-214902.
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Houlihan, CF;
Vora, N;
Byrne, T;
Lewer, D;
Kelly, G;
Heaney, J;
Gandhi, S;
... SAFER Investigators; + view all
(2020)
Pandemic peak SARS-CoV-2 infection and seroconversion rates in London frontline health-care workers.
The Lancet
, 396
(10246)
e6-e7.
10.1016/S0140-6736(20)31484-7.
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Kotsiou, E;
Hou, TZ;
Robinson, J;
Varsani, S;
Oakes, T;
Becker, PD;
Patel, S;
... Newton, K; + view all
(2020)
Next generation clonal neoantigen targeting T cells, generated using the PELEUS (TM) bioinformatics platform and the VELOS (TM) manufacturing method show superior reactivity and phenotypic characteristics than classical TIL products.
Presented at: AACR Annual Meeting, Philadelphia, PA, USA.
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Litchfield, K;
Stanislaw, S;
Spain, L;
Gallegos, LL;
Rowan, A;
Schnidrig, D;
Rosenbaum, H;
... Turajlic, S; + view all
(2020)
Representative Sequencing: Unbiased Sampling of Solid Tumor Tissue.
Cell Reports
, 31
(5)
p. 107550.
10.1016/j.celrep.2020.107550.
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López, S;
Lim, EL;
Horswell, S;
Haase, K;
Huebner, A;
Dietzen, M;
Mourikis, TP;
... McGranahan, N; + view all
(2020)
Interplay between whole-genome doubling and the accumulation of deleterious alterations in cancer evolution.
Nature Genetics
, 52
(3)
pp. 283-293.
10.1038/s41588-020-0584-7.
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Watkins, TBK;
Lim, EL;
Petkovic, M;
Elizalde, S;
Birkbak, NJ;
Wilson, GA;
Moore, DA;
... Swanton, C; + view all
(2020)
Pervasive chromosomal instability and karyotype order in tumour evolution.
Nature
, 587
pp. 126-132.
10.1038/s41586-020-2698-6.
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Zhai, H;
Moore, D;
Jamal-Hanjani, M;
(2020)
Inactivation of RB1 and histological transformation in EGFR-mutant lung adenocarcinoma.
Annals of Oncology
, 31
(2)
pp. 169-170.
10.1016/j.annonc.2019.12.004.
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2019
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Biswas, D;
Birkbak, NJ;
Rosenthal, R;
Hiley, CT;
Lim, EL;
Papp, K;
Boeing, S;
... TRACERx Consortium; + view all
(2019)
A clonal expression biomarker associates with lung cancer mortality.
Nature Medicine
, 25
pp. 1540-1548.
10.1038/s41591-019-0595-z.
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Chemi, F;
Rothwell, DG;
McGranahan, N;
Gulati, S;
Abbosh, C;
Pearce, SP;
Zhou, C;
... TRACERx Consortium, .; + view all
(2019)
Pulmonary venous circulating tumor cell dissemination before tumor resection and disease relapse.
Nature Medicine
, 25
pp. 1534-1539.
10.1038/s41591-019-0593-1.
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Joshi, K;
Robert de Massy, M;
Ismail, M;
Reading, JL;
Uddin, I;
Woolston, A;
Hatipoglu, E;
... Chain, B; + view all
(2019)
Spatial heterogeneity of the T cell receptor repertoire reflects the mutational landscape in lung cancer.
Nature Medicine
, 25
pp. 1549-1559.
10.1038/s41591-019-0592-2.
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Kidd, AC;
Skrzypski, M;
Jamal-Hanjani, M;
Blyth, KG;
(2019)
Cancer cachexia in thoracic malignancy: a narrative review.
Current Opinion in Supportive and Palliative Care
, 13
(4)
pp. 316-322.
10.1097/SPC.0000000000000465.
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Raza, SEA;
AbdulJabbar, K;
Jamal-Hanjani, M;
Veeriah, S;
Le Quesne, J;
Swanton, C;
Yuan, Y;
(2019)
Deconvolving Convolutional Neural Network for Cell Detection.
In:
2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019).
(pp. pp. 891-894).
IEEE: Venice, Italy,.
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Rosenthal, R;
Cadieux, EL;
Salgado, R;
Bakir, MA;
Moore, DA;
Hiley, CT;
Lund, T;
... TRACERx consortium; + view all
(2019)
Neoantigen-directed immune escape in lung cancer evolution.
Nature
10.1038/s41586-019-1032-7.
(In press).
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2018
|
Lindsay, CR;
Jamal-Hanjani, M;
Forster, M;
Blackhall, F;
(2018)
KRAS: Reasons for optimism in lung cancer.
European Journal of Cancer
, 99
pp. 20-27.
10.1016/j.ejca.2018.05.001.
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Mackay, HL;
Moore, D;
Hall, C;
Birkbak, NJ;
Jamal-Hanjani, M;
Karim, SA;
Phatak, VM;
... Muller, PAJ; + view all
(2018)
Genomic instability in mutant p53 cancer cells upon entotic engulfment.
Nature Communications
, 9
, Article 3070. 10.1038/s41467-018-05368-1.
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Turajlic, S;
Xu, H;
Litchfield, K;
Rowan, A;
Chambers, T;
Lopez, JI;
Nicol, D;
... Swanton, C; + view all
(2018)
Tracking Cancer Evolution Reveals Constrained Routes to Metastases: TRACERx Renal.
Cell
, 173
(3)
581-594.e12.
10.1016/j.cell.2018.03.057.
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Turajlic, S;
Xu, H;
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