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Number of items: 64.
Article
Au, L;
Hatipoglu, E;
Robert de Massy, M;
Litchfield, K;
Beattie, G;
Rowan, A;
Schnidrig, D;
... TRACERx Renal Consortium; + view all
(2021)
Determinants of anti-PD-1 response and resistance in clear cell renal cell carcinoma.
Cancer Cell
, 39
pp. 1497-1518.
10.1016/j.ccell.2021.10.001.
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Barmpoutis, P;
Di Capite, M;
Kayhanian, H;
Waddingham, W;
Alexander, DC;
Jansen, M;
Kwong, FNK;
(2021)
Tertiary lymphoid structures (TLS) identification and density assessment on H&E-stained digital slides of lung cancer.
PLOS ONE
, 16
(9)
, Article e0256907. 10.1371/journal.pone.0256907.
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Baumhoer, D;
Haefliger, S;
Ameline, B;
Hartmann, W;
Amary, F;
Cleven, A;
Klein, MJ;
... O'Donnell, P; + view all
(2021)
Ossifying Fibroma of Non-odontogenic Origin: A Fibro-osseous Lesion in the Craniofacial Skeleton to be (Re-)considered.
Head and Neck Pathology
10.1007/s12105-021-01351-3.
(In press).
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Ben-Yosef, N;
Frampton, M;
Schiff, ER;
Daher, S;
Abu Baker, F;
Safadi, R;
Israeli, E;
... Levine, AP; + view all
(2021)
Genetic analysis of four consanguineous multiplex families with inflammatory bowel disease.
Gastroenterology Report
, 9
(6)
pp. 521-532.
10.1093/gastro/goab007.
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Bentham, R;
Litchfield, K;
Watkins, TBK;
Lim, EL;
Rosenthal, R;
Martinez-Ruiz, C;
Hiley, CT;
... McGranahan, N; + view all
(2021)
Using DNA sequencing data to quantify T cell fraction and therapy response.
Nature
, 597
pp. 555-560.
10.1038/s41586-021-03894-5.
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Bollen, Y;
Stelloo, E;
van Leenen, P;
van den Bos, M;
Ponsioen, B;
Lu, B;
van Roosmalen, MJ;
... Snippert, HJG; + view all
(2021)
Reconstructing single-cell karyotype alterations in colorectal cancer identifies punctuated and gradual diversification patterns.
Nature Genetics
10.1038/s41588-021-00891-2.
(In press).
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Bornschein, Jan;
Quante, Michael;
Jansen, Marnix;
(2021)
The complexity of cancer origins at the gastro-oesophageal junction.
Best Practice & Research Clinical Gastroenterology
, 50-51
, Article 101729. 10.1016/j.bpg.2021.101729.
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Bortolomeazzi, M;
Keddar, MR;
Montorsi, L;
Acha-Sagredo, A;
Benedetti, L;
Temelkovski, D;
Choi, S;
... Ciccarelli, FD; + view all
(2021)
Immunogenomics of Colorectal Cancer Response to Checkpoint Blockade: Analysis of the KEYNOTE 177 Trial and Validation Cohorts.
Gastroenterology
10.1053/j.gastro.2021.06.064.
(In press).
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Chen, S-H;
Miles, K;
Taylor, SA;
Ganeshan, B;
Rodriquez, M;
Fraioli, F;
Wan, S;
... Groves, A; + view all
(2021)
FDG-PET/CT in colorectal cancer: potential for vascular-metabolic imaging to provide markers of prognosis.
European Journal of Nuclear Medicine and Molecular Imaging
10.1007/s00259-021-05318-y.
(In press).
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Childs, A;
Steele, CD;
Vesely, C;
Rizzo, FMM;
Ensell, L;
Lowe, H;
Dhami, P;
... Meyer, T; + view all
(2021)
Whole genome sequencing of single circulating tumor cells from neuroendocrine neoplasms.
Endocrine-Related Cancer
10.1530/ERC-21-0179.
(In press).
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Cohen, OC;
Brodermann, MH;
Dervin, A;
Raja, N;
Marafioti, T;
Otero, S;
Beale, T;
... Morley, S; + view all
(2021)
Lymph node core biopsies reliably permit diagnosis of lymphoproliferative diseases. Real‐World Experience from 554 sequential core biopsies from a single centre.
European Journal of Haematology
, 106
(2)
pp. 267-272.
10.1111/ejh.13545.
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Connolly, C;
Sabarigirivasan, V;
Cottone, L;
Flanagan, AM;
Tirabosco, R;
(2021)
An overview and update on bone lesion in craniofacial bones.
Diagnostic Histopathology
, 27
(5)
pp. 216-225.
10.1016/j.mpdhp.2021.02.006.
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De Noon, S;
Flanagan, AM;
Tirabosco, R;
O'Donnell, P;
Amary, F;
(2021)
EWSR1-SMAD₃ fibroblastic tumour of bone: expanding the clinical spectrum.
Skeletal Radiology
, 50
pp. 445-450.
10.1007/s00256-020-03563-0.
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De Noon, S;
Ijaz, J;
Coorens, TH;
Amary, F;
Ye, H;
Strobl, A;
Lyskjaer, I;
... Behjati, S; + view all
(2021)
MYC amplifications are common events in childhood osteosarcoma.
Journal of Pathology: Clinical Research
10.1002/cjp2.219.
(In press).
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Fessas, P;
Spina, P;
Boldorini, RL;
Pirisi, M;
Minisini, R;
Mauri, FA;
Simpson, F;
... Pinato, DJ; + view all
(2021)
Phenotypic Characteristics of the Tumour Microenvironment in Primary and Secondary Hepatocellular Carcinoma.
Cancers
, 13
(9)
, Article 2137. 10.3390/cancers13092137.
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Fu, X;
Zhao, Y;
Lopez, JI;
Rowan, A;
Au, L;
Fendler, A;
Hazell, S;
... Bates, PA; + view all
(2021)
Spatial patterns of tumour growth impact clonal diversification in a computational model and the TRACERx Renal study.
Nature Ecology & Evolution
10.1038/s41559-021-01586-x.
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Ganeshan, B;
Miles, K;
Afaq, A;
Punwani, S;
Rodriguez, M;
Wan, S;
Walls, D;
... Groves, A; + view all
(2021)
Texture Analysis of Fractional Water Content Images Acquired during PET/MRI: Initial Evidence for an Association with Total Lesion Glycolysis, Survival and Gene Mutation Profile in Primary Colorectal Cancer.
Cancers
, 13
(11)
, Article 2715. 10.3390/cancers13112715.
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Gerber, JP;
Russ, J;
Chandrasekar, V;
Offermann, N;
Lee, H-M;
Spear, S;
Guzzi, N;
... Salomoni, P; + view all
(2021)
Aberrant chromatin landscape following loss of the H3.3 chaperone Daxx in haematopoietic precursors leads to Pu.1-mediated neutrophilia and inflammation.
Nature Cell Biology
10.1038/s41556-021-00774-y.
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Gomez, Keith;
Laffan, Mike;
Bradbury, Charlotte;
(2021)
Debate: Should the dose or duration of anticoagulants for the prevention of venous thrombosis be increased in patients with COVID-19 while we are awaiting the results of clinical trials?
British Journal of Haematology
, 192
(3)
pp. 459-466.
10.1111/bjh.17241.
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Granai, M;
Lazzi, S;
Mancini, V;
Akarca, A;
Santi, R;
Vergoni, F;
Sorrentino, E;
... Leoncini, L; + view all
(2021)
Burkitt lymphoma with granulomatous reaction: A M1/TH1‐polarized microenvironment associates with controlled growth and spontaneous regression.
Histopathology
10.1111/his.14391.
(In press).
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Haim-Vilmovsky, L;
Henriksson, J;
Walker, JA;
Miao, Z;
Natan, E;
Kar, G;
Clare, S;
... Teichmann, SA; + view all
(2021)
Mapping Rora expression in resting and activated CD4+ T cells.
PLOS One
, 16
(5)
, Article e0251233. 10.1371/journal.pone.0251233.
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Halligan, S;
Boone, D;
Archer, L;
Ahmad, T;
Bloom, S;
Rodriguez-Justo, M;
Taylor, SA;
(2021)
Prognostic biomarkers to identify patients likely to develop severe Crohn's disease: a systematic review.
Health Technology Assessment
, 25
(45)
1-+.
10.3310/hta25450.
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Hepburn, E;
D'Costa, M;
Cottone, L;
Flanagan, AM;
Tirabosco, R;
(2021)
An overview and update on soft tissue lesions of the head and neck.
Diagnostic Histopathology
, 27
(5)
pp. 171-181.
10.1016/j.mpdhp.2021.02.001.
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Hussein, M;
Sehgal, V;
Sami, S;
Bassett, P;
Sweis, R;
Graham, D;
Telese, A;
... Haidry, R; + view all
(2021)
The natural history of low-grade dysplasia in Barrett's esophagus and risk factors for progression.
JGH Open
10.1002/jgh3.12625.
(In press).
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Ingelfinger, F;
Krishnarajah, S;
Kramer, M;
Utz, SG;
Galli, E;
Lutz, M;
Zwicky, P;
... Becher, B; + view all
(2021)
Single-cell profiling of myasthenia gravis identifies a pathogenic T cell signature.
Acta Neuropathologica
10.1007/s00401-021-02299-y.
(In press).
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Jurakic Toncic, R;
Jakasa, I;
Sun, Y;
Hurault, G;
Ljubojevic Hadzavdic, S;
Tanaka, RJ;
Pavicic, B;
... Marinovic, B; + view all
(2021)
Stratum corneum markers of innate and T helper cell-related immunity and their relation to the disease severity in Croatian patients with atopic dermatitis.
Journal of the European Academy of Dermatology and Venereology
, 35
(5)
pp. 1186-1196.
10.1111/jdv.17132.
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Koelsche, C;
Schrimpf, D;
Stichel, D;
Sill, M;
Sahm, F;
Reuss, DE;
Blattner, M;
... von Deimling, A; + view all
(2021)
Sarcoma classification by DNA methylation profiling.
Nature Communications
, 12
, Article 498. 10.1038/s41467-020-20603-4.
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Lam, AK;
Bourke, MJ;
Chen, R;
Fiocca, R;
Fujishima, F;
Fujii, S;
Jansen, M;
... Nagtegaal, ID; + view all
(2021)
Dataset for the reporting of carcinoma of the oesophagus in resection specimens: recommendations from the International Collaboration on Cancer Reporting.
Human Pathology
, 114
pp. 54-65.
10.1016/j.humpath.2021.05.003.
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Lecat, Catherine SY;
Rodriguez-Justo, Manuel;
Patel, Dominic;
Yong, Kwee;
Papanikolaou, Xenofon;
(2021)
A rare case of relapsed multiple myeloma with aberrant T-cell antigen expression and skin plasmacytomas.
eJHaem
, 2
(2)
pp. 301-302.
10.1002/jha2.172.
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Lechner, M;
Schartinger, VH;
Steele, CD;
Nei, WL;
Ooft, ML;
Schreiber, L-M;
Pipinikas, CP;
... Lund, VJ; + view all
(2021)
Somatostatin receptor 2 expression in nasopharyngeal cancer is induced by Epstein Barr virus infection: impact on prognosis, imaging and therapy.
Nature Communications
, 12
(1)
, Article 117. 10.1038/s41467-020-20308-8.
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Levine, AP;
Alexander, SC;
Young, M;
Arora, R;
(2021)
A Case Report of Incidental Primary Leiomyosarcoma of the Fallopian Tube and a Review of the Recent Literature.
International Journal of Gynecological Pathology
, 40
(3)
pp. 310-314.
10.1097/PGP.0000000000000698.
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Lyskjaer, I;
Davies, C;
Strobl, A-C;
Hindley, J;
James, S;
Lalam, RK;
Cross, W;
... Flanagan, AM; + view all
(2021)
Circulating tumour DNA is a promising biomarker for risk stratification of central chondrosarcoma with IDH1/2 and GNAS mutations.
Molecular Oncology
10.1002/1878-0261.13102.
(In press).
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Lyskjaer, I;
De Noon, S;
Tirabosco, R;
Rocha, AM;
Lindsay, D;
Amary, F;
Ye, H;
... Flanagan, AM; + view all
(2021)
DNA methylation-based profiling of bone and soft tissue tumours: a validation study of the 'DKFZ Sarcoma Classifier'.
The Journal of Pathology: Clinical Research
10.1002/cjp2.215.
(In press).
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Mackenzie, Strachan;
Shafat, Manar;
Roddy, Harriet;
Hyare, Harpreet;
Neill, Lorna;
Marzolini, Maria AV;
Gilhooley, Michael;
... Roddie, Claire; + view all
(2021)
Pembrolizumab for the treatment of progressive multifocal leukoencephalopathy following anti-CD19 CAR-T therapy: a case report.
EJHaem
, 2
(4)
pp. 848-853.
10.1002/jha2.274.
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Meecham, A;
Miranda, E;
Morris, HT;
Hair, J;
Oien, KA;
Gerrard, G;
Guppy, N;
... Rodriguez-Justo, M; + view all
(2021)
Alternative tissue fixation for combined histopathological and molecular analysis in a clinically representative setting.
Histochemistry and Cell Biology
, 156
pp. 595-607.
10.1007/s00418-021-02029-1.
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Megy, Karyn;
Downes, Kate;
Morel-Kopp, Marie-Christine;
Bastida, Jose M;
Brooks, Shannon;
Bury, Loredana;
Leinoe, Eva;
... Freson, Kathleen; + view all
(2021)
GoldVariants, a resource for sharing rare genetic variants detected in bleeding, thrombotic, and platelet disorders: Communication from the ISTH SSC Subcommittee on Genomics in Thrombosis and Hemostasis.
Journal of Thrombosis and Haemostasis
, 19
(10)
pp. 2612-2617.
10.1111/jth.15459.
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Natoli, M;
Gallon, J;
Lu, H;
Amgheib, A;
Pinato, DJ;
Mauri, FA;
Marafioti, T;
... Ghaem-Maghami, S; + view all
(2021)
Transcriptional analysis of multiple ovarian cancer cohorts reveals prognostic and immunomodulatory consequences of ERV expression.
Journal for ImmunoTherapy of Cancer
, 9
(1)
, Article e001519. 10.1136/jitc-2020-001519.
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Neary-Zajiczek, L;
Essmann, C;
Rau, A;
Bano, S;
Clancy, N;
Jansen, M;
Heptinstall, L;
... Stoyanov, D; + view all
(2021)
Stain-free identification of tissue pathology using a generative adversarial network to infer nanomechanical signatures.
Nanoscale Advances
, 3
(22)
pp. 6403-6414.
10.1039/d1na00527h.
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Neves, JB;
Vanaclocha Saiz, L;
Abu-Ghanem, Y;
Marchetti, M;
Tran-Dang, M-A;
El-Sheikh, S;
Barod, R;
... RECUR consortium, .; + view all
(2021)
Pattern, timing and predictors of recurrence after surgical resection of chromophobe renal cell carcinoma.
World Journal of Urology
, 39
pp. 3823-3831.
10.1007/s00345-021-03683-9.
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Neves, JB;
Varley, R;
Agnesi, S;
Withington, J;
Rodrigues, FB;
Warren, H;
Yuminaga, Y;
... Tran, MGB; + view all
(2021)
Growth and renal function dynamics of renal oncocytomas on active surveillance.
BJU International
10.1111/bju.15499.
(In press).
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Osumi-Sutherland, David;
Xu, Chuan;
Keays, Maria;
Levine, Adam P;
Kharchenko, Peter V;
Regev, Aviv;
Lein, Ed;
(2021)
Cell type ontologies of the Human Cell Atlas.
Nature Cell Biology
, 23
(11)
pp. 1129-1135.
10.1038/s41556-021-00787-7.
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Overwater, A;
van Munster, SN;
Offerhaus, GJA;
Seldenrijk, CA;
Raicu, GM;
Koch, AD;
Bergman, JJGHM;
... Weusten, BLAM; + view all
(2021)
Extension of early esophageal squamous cell neoplasia into ducts and submucosal glands and the role of endoscopic ablation therapy.
Gastrointestinal Endoscopy
, 94
(4)
832-842.e2.
10.1016/j.gie.2021.04.028.
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Pinato, David J;
Murray, Sam M;
Forner, Alejandro;
Kaneko, Takahiro;
Fessas, Petros;
Toniutto, Pierluigi;
Minguez, Beatriz;
... Mazzaferro, Vincenzo; + view all
(2021)
Trans-arterial chemoembolization as a loco-regional inducer of immunogenic cell death in hepatocellular carcinoma: implications for immunotherapy.
Journal for ImmunoTherapy of Cancer
, 9
(9)
, Article e003311. 10.1136/jitc-2021-003311.
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Pinato, DJ;
Vallipuram, A;
Evans, JS;
Wong, C;
Zhang, H;
Brown, M;
Dina, RE;
... Sharma, R; + view all
(2021)
Programmed Cell Death Ligand Expression Drives Immune Tolerogenesis across the Diverse Subtypes of Neuroendocrine Tumours.
Neuroendocrinology
, 111
(5)
pp. 465-474.
10.1159/000506745.
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Pollara, G;
Turner, CT;
Rosenheim, J;
Chandran, A;
Bell, LCK;
Khan, A;
Patel, A;
... Noursadeghi, M; + view all
(2021)
Exaggerated IL-17A activity in human in vivo recall responses discriminates active tuberculosis from latent infection and cured disease.
Science Translational Medicine
, 13
(592)
, Article eabg7673. 10.1126/scitranslmed.abg7673.
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Porter, JC;
Win, T;
Erlandsson, K;
Fraioli, F;
Rashidnasab, A;
Holman, B;
Ganeshan, B;
... Groves, AM; + view all
(2021)
Measurement of hypoxia in the lung in IPF: an F-MISO PET CT study.
European Respiratory Journal
, 58
(4)
, Article 2004584. 10.1183/13993003.04584-2020.
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Pye, H;
Singh, S;
Norris, JM;
Carmona Echeverria, LM;
Stavrinides, V;
Grey, A;
Dinneen, E;
... Whitaker, HC; + view all
(2021)
Evaluation of PSA and PSA Density in a Multiparametric Magnetic Resonance Imaging-Directed Diagnostic Pathway for Suspected Prostate Cancer: The INNOVATE Trial.
Cancers
, 13
(8)
, Article 1985. 10.3390/cancers13081985.
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Saifuddin, A;
Shafiq, H;
Rajakulasingam, R;
Tan, A;
O'Donnell, P;
Khoo, M;
(2021)
A review of staging chest CT in trunk and extremity soft tissue sarcoma.
British Journal of Radiology
, 94
(1118)
, Article 20201109. 10.1259/bjr.20201109.
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Satish, P;
Kuusk, T;
Campain, N;
Abu-Ghanem, Y;
Neves, J;
Barod, R;
El-Sheikh, S;
... Bex, A; + view all
(2021)
The European Association of Urology COVID Intermediate-priority Group is Poorly Predictive of Pathological High Risk Among Patients with Renal Tumours.
European Urology
10.1016/j.eururo.2021.05.010.
(In press).
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Stubbs, MJ;
Coppo, P;
Cheshire, C;
Veyradier, A;
Dufek, S;
Levine, AP;
Thomas, M;
... Scully, MA; + view all
(2021)
Identification of a novel genetic locus associated with immune mediated thrombotic thrombocytopenic purpura.
Haematologica
10.3324/haematol.2020.274639.
(In press).
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Tarabichi, M;
Demeulemeester, J;
Verfaillie, A;
Flanagan, AM;
Van Loo, P;
Konopka, T;
(2021)
A pan-cancer landscape of somatic mutations in non-unique regions of the human genome.
Nature Biotechnology
, 39
pp. 1589-1596.
10.1038/s41587-021-00971-y.
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Tirabosco, Roberto;
O'Donnell, Paul;
Flanagan, Adrienne M;
(2021)
Notochordal Tumors.
Surgical Pathology Clinics
, 14
(4)
pp. 619-643.
10.1016/j.path.2021.06.006.
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Turner, CT;
Brown, J;
Shaw, E;
Uddin, I;
Tsaliki, E;
Roe, JK;
Pollara, G;
... Noursadeghi, M; + view all
(2021)
Persistent T Cell Repertoire Perturbation and T Cell Activation in HIV After Long Term Treatment.
Frontiers Immunology
, 12
, Article 634489. 10.3389/fimmu.2021.634489.
(In press).
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Venkatesan, S;
Angelova, M;
Puttick, C;
Zhai, H;
Caswell, DR;
Lu, W-T;
Dietzen, M;
... Consortium, T; + view all
(2021)
Induction of APOBEC3 Exacerbates DNA Replication Stress and Chromosomal Instability in Early Breast and Lung Cancer Evolution.
Cancer Discovery
, 11
(10)
pp. 2456-2473.
10.1158/2159-8290.CD-20-0725.
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Voysey, M;
Costa Clemens, SA;
Madhi, SA;
Weckx, LY;
Folegatti, PM;
Aley, PK;
Angus, B;
... Oxford COVID Vaccine Trial Group, .; + view all
(2021)
Single-dose administration and the influence of the timing of the booster dose on immunogenicity and efficacy of ChAdOx1 nCoV-19 (AZD1222) vaccine: a pooled analysis of four randomised trials.
The Lancet
, 397
(10277)
pp. 881-891.
10.1016/S0140-6736(21)00432-3.
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Wu, F;
Watanabe, N;
Tzioni, M-M;
Akarca, A;
Zhang, C;
Li, Y;
Chen, Z;
... Du, M-Q; + view all
(2021)
Thyroid MALT lymphoma: self-harm to gain potential T-cell help.
Leukemia
10.1038/s41375-021-01289-z.
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Zhao, T;
Siu, I-M;
Williamson, T;
Zhang, H;
Ji, C;
Burger, PC;
Connis, N;
... Gallia, GL; + view all
(2021)
AZD8055 enhances in vivo efficacy of afatinib in chordomas.
The Journal of Pathology
, 255
(1)
pp. 72-83.
10.1002/path.5739.
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Zhao, Y;
Fu, X;
Lopez, JI;
Rowan, A;
Au, L;
Fendler, A;
Hazell, S;
... Litchfield, K; + view all
(2021)
Selection of metastasis competent subclones in the tumour interior.
Nature Ecology & Evolution
, 5
pp. 1033-1045.
10.1038/s41559-021-01456-6.
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Zoumpoulidou, G;
Alvarez-Mendoza, C;
Mancusi, C;
Ahmed, R-M;
Denman, M;
Steele, CD;
Tarabichi, M;
... Mittnacht, S; + view all
(2021)
Therapeutic vulnerability to PARP1,2 inhibition in RB1-mutant osteosarcoma.
Nature Communications
, 12
(1)
, Article 7064. 10.1038/s41467-021-27291-8.
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Proceedings paper
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Barmpoutis, P;
Kayhanian, H;
Waddingham, W;
Alexander, DC;
Jansen, M;
(2021)
Three-dimensional tumour microenvironment reconstruction and tumour-immune interactions' analysis.
In:
2021 Digital Image Computing: Techniques and Applications (DICTA).
IEEE: Gold Coast, Australia.
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Hagos, YB;
Lecat, CSY;
Patel, D;
Lee, L;
Tran, TA;
Justo, MR;
Yong, K;
(2021)
Cell abundance aware deep learning for cell detection on highly imbalanced pathological data.
In:
2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI).
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