Browse by UCL people
Group by: Type | Date
Number of items: 27.
2023
Doria-Belenguer, Sergio;
Xenos, Alexandros;
Ceddia, Gaia;
Malod-Dognin, Noël;
Pržulj, Nataša;
(2023)
A functional analysis of omic network embedding spaces reveals key altered functions in cancer.
Bioinformatics
, 39
(5)
, Article btad281. 10.1093/bioinformatics/btad281.
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Gureghian, Vincent;
Herbst, Hailee;
Kozar, Ines;
Mihajlovic, Katarina;
Malod-Dognin, Noël;
Ceddia, Gaia;
Angeli, Cristian;
... Kreis, Stephanie; + view all
(2023)
A multi-omics integrative approach unravels novel genes and pathways associated with senescence escape after targeted therapy in NRAS mutant melanoma.
Cancer Gene Therapy
, 30
pp. 1330-1345.
10.1038/s41417-023-00640-z.
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Malod-Dognin, Noel;
Ceddia, Gaia;
Gvozdenov, Maja;
Tomic, Branko;
Manevski, Sofija Dunjic;
Djordjevic, Valentina;
Przulj, Natasa;
(2023)
A phenotype driven integrative framework uncovers molecular mechanisms of a rare hereditary thrombophilia.
PLoS ONE
, 18
(4)
, Article e0284084. 10.1371/journal.pone.0284084.
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Xenos, Alexandros;
Malod-Dognin, Noël;
Zambrana, Carme;
Pržulj, Nataša;
(2023)
Integrated Data Analysis Uncovers New COVID-19 Related Genes and Potential Drug Re-Purposing Candidates.
International Journal of Molecular Sciences
, 24
(2)
, Article 1431. 10.3390/ijms24021431.
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2022
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Cifuentes, Myriam Patricia;
Suarez, Clara Mercedes;
Cifuentes, Ricardo;
Malod-Dognin, Noel;
Windels, Sam;
Valderrama, Jose Fernando;
Juarez, Paul D;
... Hood, Darryl B; + view all
(2022)
Big Data to Knowledge Analytics Reveals the Zika Virus Epidemic as Only One of Multiple Factors Contributing to a Year-Over-Year 28-Fold Increase in Microcephaly Incidence.
International Journal of Environmental Research and Public Health
, 19
(15)
, Article 9051. 10.3390/ijerph19159051.
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Windels, Sam FL;
Malod-Dognin, Noel;
Przulj, Natasa;
(2022)
Identifying cellular cancer mechanisms through pathway-driven data integration.
Bioinformatics
, 38
(18)
pp. 4344-4351.
10.1093/bioinformatics/btac493.
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2021
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Lugo-Martinez, J;
Zeiberg, D;
Gaudelet, T;
Malod-Dognin, N;
Przulj, N;
Radivojac, P;
(2021)
Classification in biological networks with hypergraphlet kernels.
Bioinformatics
, 37
(7)
pp. 1000-1007.
10.1093/bioinformatics/btaa768.
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Salazar, DA;
Pržulj, N;
Valencia, CF;
(2021)
Multi-project and Multi-profile joint Non-negative Matrix Factorization for cancer omic datasets.
Bioinformatics
, 37
(24)
pp. 4801-4809.
10.1093/bioinformatics/btab579.
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Xenos, A;
Malod-Dognin, N;
Milinkovic, S;
Przulj, N;
(2021)
Linear functional organization of the omic embedding space.
Bioinformatics
, 37
(21)
pp. 3839-3847.
10.1093/bioinformatics/btab487.
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Zambrana, Carme;
Xenos, Alexandros;
Böttcher, René;
Malod-Dognin, Noël;
Pržulj, Nataša;
(2021)
Network neighbors of viral targets and differentially expressed genes in COVID-19 are drug target candidates.
Scientific Reports
, 11
, Article 18985. 10.1038/s41598-021-98289-x.
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2020
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Gaudelet, T;
Malod-Dognin, N;
Sánchez-Valle, J;
Pancaldi, V;
Valencia, A;
Pržulj, N;
(2020)
Unveiling new disease, pathway, and gene associations via multi-scale neural network.
PLoS One
, 15
(4)
, Article e0231059. 10.1371/journal.pone.0231059.
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Malod-Dognin, N;
Pancaldi, V;
Valencia, A;
Przulj, N;
(2020)
Chromatin network markers of leukemia.
Bioinformatics
, 36
(Suppl. 1)
i455-i463.
10.1093/bioinformatics/btaa445.
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Perin, N;
Rep, V;
Sovic, I;
Juricic, S;
Selgrad, D;
Klobucar, M;
Przulj, N;
... Hranjec, M; + view all
(2020)
Antiproliferative activity and mode of action analysis of novel amino and amido substituted phenantrene and naphtho[2,1-b]thiophene derivatives.
European Journal of Medicinal Chemistry
, 185
, Article 111833. 10.1016/j.ejmech.2019.111833.
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2019
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Malod-Dognin, N;
Petschnigg, J;
Windels, SFL;
Povh, J;
Hemingway, H;
Ketteler, R;
Pržulj, N;
(2019)
Towards a data-integrated cell.
Nature Communications
, 10
(805)
10.1038/s41467-019-08797-8.
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Malod-Dognin, N;
Pržulj, N;
(2019)
Functional geometry of protein interactomes.
Bioinformatics
, 35
(19)
pp. 3727-2734.
10.1093/bioinformatics/btz146.
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Przulj, N;
Gaudelet, T;
(2019)
Introduction to graph and network theory.
In: Przulj, N, (ed.)
Analyzing Network Data in Biology and Medicine An Interdisciplinary Textbook for Biological, Medical and Computational Scientists.
(pp. 111-150).
Cambridge University Press: Cambridge, UK.
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Windels, SFL;
Malod-Dognin, N;
Przulj, N;
(2019)
Graphlet Laplacians for topology-function and topology-disease relationships.
Bioinformatics
, 35
(24)
pp. 5226-5234.
10.1093/bioinformatics/btz455.
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2018
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Gaudelet, T;
Malod-Dognin, N;
Przulj, N;
(2018)
Higher-order molecular organization as a source of biological function.
Bioinformatics
, 34
(17)
i944-i953.
10.1093/bioinformatics/bty570.
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Malod-Dognin, N;
Petschnigg, J;
Pržulj, N;
(2018)
Precision medicine ― A promising, yet challenging road lies ahead.
Current Opinion in Systems Biology
, 7
pp. 1-7.
10.1016/j.coisb.2017.10.003.
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Pavelic, SK;
Medica, JS;
Gumbarevic, D;
Filosevic, A;
Przulj, N;
Pavelic, K;
(2018)
Critical Review on Zeolite Clinoptilolite Safety and Medical Applications in vivo.
Frontiers in Pharmacology
, 9
, Article 1350. 10.3389/fphar.2018.01350.
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2017
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Malod-Dognin, N;
Ban, K;
Przulj, N;
(2017)
Unified Alignment of Protein-Protein Interaction Networks.
Scientific Reports
, 7
, Article 953. 10.1038/s41598-017-01085-9.
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Malod-Dognin, N;
Pržulj, N;
(2017)
Omics Data Complementarity Underlines Functional Cross-Communication in Yeast.
Journal of Integrative Bioinformatics
, 14
(2)
, Article 20170018. 10.1515/jib-2017-0018.
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Sokolina, K;
Kittanakom, S;
Snider, J;
Kotlyar, M;
Maurice, P;
Gandia, J;
Benleulmi-Chaachoua, A;
... Stagljar, I; + view all
(2017)
Systematic protein-protein interaction mapping for clinically relevant human GPCRs.
Molecular Systems Biology
, 13
(3)
, Article 918. 10.15252/msb.20167430.
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2016
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Gligorijević, V;
Malod-Dognin, N;
Pržulj, N;
(2016)
Integrative methods for analyzing big data in precision medicine.
Proteomics
, 16
(5)
pp. 741-758.
10.1002/pmic.201500396.
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Przulj, N;
(2016)
A global genetic interaction network maps a wiring diagram of cellular function.
Science
, 353
, Article 6306. 10.1126/science.aaf1420.
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Przulj, N;
Malod-Dognin, N;
(2016)
Network analytics in the age of big data.
Science
, 353
(6295)
pp. 123-124.
10.1126/science.aah3449.
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Sarajlic, A;
Malod-Dognin, N;
Yaveroglou, O;
Przulj, N;
(2016)
Graphlet-based Characterization of Directed Networks.
Scientific Reports
, 6
, Article 35098. 10.1038/srep35098.
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