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Number of items: 47.
Article
Aganj, I;
Iglesias, JE;
Reuter, M;
Sabuncu, MR;
Fischl, B;
(2017)
Mid-space-independent deformable image registration.
NeuroImage
, 152
pp. 158-170.
10.1016/j.neuroimage.2017.02.055.
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Arganda-Carreras, I;
Manoliu, T;
Mazuras, N;
Schulze, F;
Iglesias, JE;
Buhler, K;
Jenett, A;
... Andrey, P; + view all
(2018)
A Statistically Representative Atlas for Mapping Neuronal Circuits in the Drosophila Adult Brain.
Frontiers in Neuroinformatics
, 12
, Article 13. 10.3389/fninf.2018.00013.
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Atzeni, A;
Peter, L;
Robinson, E;
Blackburn, E;
Althonayan, J;
Alexander, DC;
Iglesias, JE;
(2022)
Deep active learning for suggestive segmentation of biomedical image stacks via optimisation of Dice scores and traced boundary length.
Medical Image Analysis
, 81
, Article 102549. 10.1016/j.media.2022.102549.
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Billot, B;
Bocchetta, M;
Todd, E;
Dalca, AV;
Rohrer, JD;
Iglesias, JE;
(2020)
Automated segmentation of the Hypothalamus and associated subunits in brain MRI.
NeuroImage
, 223
, Article 117287. 10.1016/j.neuroimage.2020.117287.
(In press).
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Bocchetta, M;
Iglesias, JE;
Chelban, V;
Jabbari, E;
Lamb, R;
Russell, LL;
Greaves, CV;
... Rohrer, JD; + view all
(2020)
Automated Brainstem Segmentation Detects Differential Involvement in Atypical Parkinsonian Syndromes.
Journal of Movement Disorders
, 13
(1)
pp. 39-46.
10.14802/jmd.19030.
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Bocchetta, M;
Iglesias, JE;
Cash, DM;
Warren, JD;
Rohrer, JD;
(2019)
Amygdala subnuclei are differentially affected in the different genetic and pathological forms of frontotemporal dementia.
Alzheimer's and Dementia: Diagnosis, Assessment and Disease Monitoring
, 11
pp. 136-141.
10.1016/j.dadm.2018.12.006.
(In press).
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Bocchetta, M;
Iglesias, JE;
Neason, M;
Cash, DM;
Warren, JD;
Rohrer, JD;
(2020)
Thalamic nuclei in frontotemporal dementia: Mediodorsal nucleus involvement is universal but pulvinar atrophy is unique to C9orf72.
Human Brain Mapping
, 41
(4)
pp. 1006-1016.
10.1002/hbm.24856.
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Bocchetta, M;
Iglesias, JE;
Russell, L;
Greaves, CV;
Marshall, C;
Scelsi, MA;
Cash, D;
... Rohrer, J; + view all
(2019)
Segmentation of medial temporal subregions reveals early right-sided involvement in semantic variant PPA.
Alzheimer's Research and Therapy
, 11
, Article 41. 10.1186/s13195-019-0489-9.
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Bocchetta, M;
Iglesias, JE;
Scelsi, M;
Cash, D;
Cardoso, MJ;
Modat, M;
Altmann, A;
... Rohrer, JD; + view all
(2018)
Hippocampal subfield volumetry: differential pattern of atrophy in different forms of genetic frontotemporal dementia.
Journal of Alzheimer's Disease
, 64
(2)
pp. 497-504.
10.3233/JAD-180195.
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Bocchetta, M;
Todd, EG;
Peakman, G;
Cash, DM;
Convery, RS;
Russell, LL;
Thomas, DL;
... Rohrer, JD; + view all
(2021)
Differential early subcortical involvement in genetic FTD within the GENFI cohort.
NeuroImage: Clinical
, Article 102646. 10.1016/j.nicl.2021.102646.
(In press).
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Brown, EM;
Pierce, ME;
Clark, DC;
Fischl, BR;
Iglesias, JE;
Milberg, WP;
McGlinchey, RE;
(2020)
Test-retest reliability of FreeSurfer automated hippocampal subfield segmentation within and across scanners.
NeuroImage
, 210
, Article 116563. 10.1016/j.neuroimage.2020.116563.
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Chen, LW;
Sun, D;
Davis, SL;
Haswell, CC;
Dennis, EL;
Swanson, CA;
Whelan, CD;
... Morey, RA; + view all
(2018)
Smaller Hippocampal Ca1 Subfield Volume in Posttraumatic Stress Disorder.
Depression and Anxiety
, 35
(11)
pp. 1018-1029.
10.1002/da.22833.
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Cheng, You;
He, Yingnan;
Gopinath, Karthik;
Billot, Benjamin;
Iglesias, Juan Eugenio;
Wu, Chao-Yi;
Dodge, Hiroko;
... Das, Sudeshna; + view all
(2025)
Brain MRI signatures across sex and CSF Alzheimer's disease biomarkers.
Brain Communications
, 7
(3)
, Article fcaf210. 10.1093/braincomms/fcaf210.
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Costantini, Irene;
Morgan, Leah;
Yang, Jiarui;
Balbastre, Yael;
Varadarajan, Divya;
Pesce, Luca;
Scardigli, Marina;
... Hof, Patrick R; + view all
(2023)
A cellular resolution atlas of Broca's area.
Science Advances
, 9
(41)
, Article eadg3844. 10.1126/sciadv.adg3844.
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Ferraris, S;
van der Merwe, J;
Van Der Veeken, L;
Prados, F;
Iglesias, J-E;
Melbourne, A;
Lorenzi, M;
... Vercauteren, T; + view all
(2018)
A magnetic resonance multi-atlas for the neonatal rabbit brain.
NeuroImage
, 179
pp. 187-198.
10.1016/j.neuroimage.2018.06.029.
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Fu, Y;
Brown, NM;
Saeed, SU;
Casamitjana, A;
Baum, ZMC;
Delaunay, R;
Yang, Q;
... Hu, Y; + view all
(2020)
DeepReg: a deep learning toolkit for medical image registration.
The Journal of Open Source Software
, 5
(55)
, Article 2705. 10.21105/joss.02705.
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Ho, NF;
Holt, DJ;
Cheung, M;
Iglesias, JE;
Goh, A;
Wang, M;
Lim, JK;
... Zhou, J; + view all
(2017)
Progressive Decline in Hippocampal CA1 Volume in Individuals at Ultra-High-Risk for Psychosis Who Do Not Remit: Findings from the Longitudinal Youth at Risk Study.
Neuropsychopharmacology
, 42
(6)
pp. 1361-1370.
10.1038/npp.2017.5.
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Iglesias, JE;
Billot, B;
Balbastre, Y;
Magdamo, C;
Arnold, SE;
Das, S;
Edlow, BL;
... Fischl, B; + view all
(2023)
SynthSR: A public AI tool to turn heterogeneous clinical brain scans into high-resolution T1-weighted images for 3D morphometry.
Science advances
, 9
(5)
, Article eadd3607. 10.1126/sciadv.add3607.
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Iglesias, JE;
Billot, B;
Balbastre, Y;
Tabari, A;
Conklin, J;
Gilberto González, R;
Alexander, DC;
... Alzheimer’s Disease Neuroimaging Initiative, .; + view all
(2021)
Joint super-resolution and synthesis of 1 mm isotropic MP-RAGE volumes from clinical MRI exams with scans of different orientation, resolution and contrast.
Neuroimage
, 237
, Article 118206. 10.1016/j.neuroimage.2021.118206.
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Iglesias, JE;
Crampsie, S;
Strand, C;
Tachrount, M;
Thomas, DL;
Holton, JL;
(2018)
Effect of Fluorinert on the Histological Properties of Formalin-Fixed Human Brain Tissue.
Journal of Neuropathology & Experimental Neurology
10.1093/jnen/nly098.
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Iglesias, JE;
Insausti, R;
Lerma-Usabiaga, G;
Bocchetta, M;
Van Leemput, K;
Greve, DN;
van der Kouwe, A;
... Paz-Alonso, PM; + view all
(2018)
A probabilistic atlas of the human thalamic nuclei combining ex vivo MRI and histology.
NeuroImage
, 183
pp. 314-326.
10.1016/j.neuroimage.2018.08.012.
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Iglesias, JE;
Modat, M;
Peter, L;
Stevens, A;
Annunziata, R;
Vercauteren, T;
Lein, E;
... Alzheimer’s Disease Neuroimaging Initiative; + view all
(2018)
Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections.
Medical Image Analysis
, 50
pp. 127-144.
10.1016/j.media.2018.09.002.
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Iglesias, JE;
Van Leemput, K;
Augustinack, J;
Insausti, R;
Fischl, B;
Reuter, M;
(2016)
Bayesian longitudinal segmentation of hippocampal substructures in brain MRI using subject-specific atlases.
NeuroImage
, 141
pp. 542-555.
10.1016/j.neuroimage.2016.07.020.
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Liu, CJ;
Ammon, W;
Siless, V;
Fogarty, M;
Wang, R;
Atzeni, A;
Aganj, I;
... Wang, H; + view all
(2021)
Quantification of volumetric morphometry and optical property in the cortex of human cerebellum at micrometer resolution.
Neuroimage
, 244
, Article 118627. 10.1016/j.neuroimage.2021.118627.
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Mancini, M;
Casamitjana, A;
Peter, L;
Robinson, E;
Crampsie, S;
Thomas, DL;
Holton, JL;
... Iglesias, JE; + view all
(2020)
A multimodal computational pipeline for 3D histology of the human brain.
Scientific Reports
, 10
(1)
, Article 13839. 10.1038/s41598-020-69163-z.
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Mueller, SG;
Yushkevich, PA;
Das, S;
Wang, L;
Van Leemput, K;
Iglesias, JE;
Alpert, K;
... Alzheimer's Disease Neuroimaging Initiative, .; + view all
(2018)
Systematic comparison of different techniques to measure hippocampal subfield volumes in ADNI2.
NeuroImage: Clinical
, 17
pp. 1006-1018.
10.1016/j.nicl.2017.12.036.
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Peter, L;
Alexander, DC;
Magnain, C;
Iglesias, JE;
(2021)
Uncertainty-Aware Annotation Protocol to Evaluate Deformable Registration Algorithms.
IEEE Transactions on Medical Imaging
10.1109/TMI.2021.3070842.
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Pichat, J;
Iglesias, JE;
Yousry, T;
Ourselin, S;
Modat, M;
(2018)
A Survey of Methods for 3D Histology Reconstruction.
Medical Image Analysis
, 46
pp. 73-105.
10.1016/j.media.2018.02.004.
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Puonti, O;
Iglesias, JE;
Van Leemput, K;
(2016)
Fast and sequence-adaptive whole-brain segmentation using parametric Bayesian modeling.
NeuroImage
, 143
pp. 235-249.
10.1016/j.neuroimage.2016.09.011.
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Saygin, ZM;
Kliemann, D;
Iglesias, JE;
van der Kouwe, AJW;
Boyd, E;
Reuter, M;
Stevens, A;
... Alzheimer's Disease Neuroimaging Initiative, .; + view all
(2017)
High-resolution magnetic resonance imaging reveals nuclei of the human amygdala: manual segmentation to automatic atlas.
NeuroImage
, 155
pp. 370-382.
10.1016/j.neuroimage.2017.04.046.
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Stewart, W;
Allinson, K;
Al-Sarraj, S;
Bachmeier, C;
Barlow, K;
Belli, A;
Burns, MP;
... Smith, DH; + view all
(2019)
Primum non nocere: a call for balance when reporting on CTE.
Lancet Neurology
, 18
(3)
pp. 231-233.
10.1016/S1474-4422(19)30020-1.
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Tella Amo, M;
Peter, L;
Shakir, DI;
Deprest, J;
Stoyanov, D;
Iglesias, JE;
Vercauteren, T;
(2018)
Probabilistic visual and electromagnetic data fusion for robust drift-free sequential mosaicking: application to fetoscopy.
Journal of Medical Imaging
, 5
(2)
, Article 021217. 10.1117/1.JMI.5.2.021217.
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Proceedings paper
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Atzeni, A;
Jansen, M;
Ourselin, S;
Iglesias, JE;
(2018)
A probabilistic model combining deep learning and multi-atlas segmentation for semi-automated labelling of histology.
In: Frangi, AF and Schnabel, JA and Davatzikos, C and Alberola-López, C and Fichtinger, G, (eds.)
Medical Image Computing and Computer Assisted Intervention – MICCAI 2018: 21st International Conference, Proceedings, Part II.
(pp. pp. 219-227).
Springer: Cham, Switzerland.
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Casamitjana, A;
Mancini, M;
Iglesias, JE;
(2021)
Synth-by-Reg (SbR): Contrastive Learning for Synthesis-Based Registration of Paired Images.
In:
Simulation and Synthesis in Medical Imaging.
(pp. pp. 44-54).
Springer Nature: Cham, Switzerland.
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Glocker, B;
Konukoglu, E;
Lavdas, I;
Iglesias, JE;
Aboagye, EO;
Rockall, AG;
Rueckert, D;
(2016)
Correction of Fat-Water Swaps in Dixon MRI.
In: Ourselin, S and Joskowicz, L and Sabuncu, MR and Unal, G and Wells, W, (eds.)
MICCAI 2016: Medical Image Computing and Computer-Assisted Intervention -- MICCAI 2016.
(pp. pp. 536-543).
Springer International Publishing: Cham, Switzerland.
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Hu, X;
Sorby-Adams, A;
Barkhof, F;
Taylor Kimberly, W;
Puonti, O;
Iglesias, JE;
(2025)
P-Count: Persistence-Based Counting of White Matter Hyperintensities in Brain MRI.
In:
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).
(pp. pp. 100-110).
Springer: Cham, Switzerland.
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Iglesias, JE;
(2017)
Globally Optimal Coupled Surfaces for Semi-automatic Segmentation of Medical Images.
In: Niethammer, M and Styner, M and Aylward, S and Zhu, H and Oguz, I and Yap, PT and Shen, D, (eds.)
Information Processing in Medical Imaging: 25th International Conference, IPMI 2017, Boone, NC, USA, June 25-30, 2017, Proceedings.
(pp. pp. 610-621).
Springer: Cham, Switzerland.
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Iglesias, JE;
Ferraris, S;
Modat, M;
Gsell, W;
Deprest, J;
van der Merwe, JL;
Vercauteren, T;
(2017)
Template-free estimation of intracranial volume: A preterm birth animal model study.
In:
Fetal, Infant and Ophthalmic Medical Image Analysis.
(pp. pp. 3-13).
Springer Verlag
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Iglesias, JE;
Lerma-Usabiaga, G;
Garcia-Peraza-Herrera, LC;
Martinez, S;
Paz-Alonso, PM;
(2017)
Retrospective head motion estimation in structural brain MRI with 3D CNNs.
In: Descoteaux, M and Maier-Hein, L and Franz, A and Jannin, P and Collins, D, (eds.)
Medical Image Computing and Computer-Assisted Intervention − MICCAI 2017.
(pp. pp. 314-322).
Springer: Cham.
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Iglesias, JE;
Lorenzi, M;
Ferraris, S;
Peter, L;
Modat, M;
Stevens, A;
Fischl, B;
(2018)
Model-based refinement of nonlinear registrations in 3D histology reconstruction.
In: Frangi, AF and Schnabel, JA and Davatzikos, C and Alberola-López, C and Fichtinger, G, (eds.)
Medical Image Computing and Computer Assisted Intervention – MICCAI 2018: 21st International Conference, Proceedings, Part II.
(pp. pp. 147-155).
Springer: Cham, Switzerland.
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Laso, Pablo;
Cerri, Stefano;
Sorby-Adams, Annabel;
Guo, Jennifer;
Mateen, Farrah;
Goebl, Philipp;
Wu, Jiaming;
... Iglesias, Juan Eugenio; + view all
(2024)
Quantifying White Matter Hyperintensity and Brain Volumes in Heterogeneous Clinical and Low-Field Portable MRI.
In:
Proceedings - 2024 IEEE International Symposium on Biomedical Imaging (ISBI).
(pp. pp. 1-5).
IEEE: Athens, Greece.
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Liu, P;
Puonti, O;
Hu, X;
Alexander, DC;
Iglesias, JE;
(2025)
Brain-ID: Learning Contrast-Agnostic Anatomical Representations for Brain Imaging.
In:
Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics).
(pp. pp. 322-340).
Springer Nature
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Mancini, M;
Crampsie, S;
Thomas, DL;
Jaunmuktane, Z;
Holton, JL;
Iglesias, JE;
(2019)
Hierarchical Joint Registration of Tissue Blocks With Soft Shape Constraints For Large-Scale Histology of The Human Brain.
In:
2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019).
(pp. pp. 666-669).
IEEE: Venice, Italy.
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Morrell, S;
Wojna, Z;
Khoo, CS;
Ourselin, S;
Iglesias, JE;
(2018)
Large-scale mammography CAD with deformable conv-nets.
In: Stoyanov, D and Taylor, Z and Kainz, B and Maicas, G and Beichel, RR and Martel, A and Maier-Hein, L and Bhatia, K and Vercauteren, T and Oktay, O and Carneiro, G and Bradley, AP and Nascimento, J and Min, H and Brown, MS and Jacobs, C and Lassen-Schmidt, B and Mori, K and Petersen, J and San José Estépar, R and Schmidt-Richberg, A and Veiga, C, (eds.)
Image Analysis for Moving Organ, Breast and Thoracic Images: RAMBO 2018, BIA 2018 and TIA 2018: Proceedings.
(pp. pp. 64-72).
Springer: Cham, Switzerland.
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Pichat, J;
Iglesias, JE;
Nousias, S;
Yousry, T;
Ourselin, S;
Modat, M;
(2017)
Part-to-Whole Registration of Histology and MRI Using Shape Elements.
In:
2017 IEEE International Conference on Computer Vision Workshops (ICCVW).
(pp. pp. 107-115).
IEEE
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Tella-Amo, M;
Peter, L;
Shakir, DI;
Deprest, J;
Stoyanov, D;
Iglesias, JE;
Vercauteren, T;
(2018)
Technical note: Probabilistic visual and electromagnetic data fusion for robust drift-free sequential mosaicking: Application to fetoscopy.
In:
Proceedings of SPIE - Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling.
SPIE: Texas, United States.
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Tregidgo, H;
Casamitjana, A;
Latimer, C;
Kilgore, M;
Robinson, ED;
Blackburn, E;
Leemput, KV;
... Iglesias, JE; + view all
(2020)
3D Reconstruction and Segmentation of Dissection Photographs for MRI-free Neuropathology.
In:
Medical Image Computing and Computer Assisted Intervention – MICCAI 2020.
Springer International Publishing
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