Browse by UCL people
Group by: Type | Date
Jump to: Article | Working / discussion paper
Number of items: 30.
Article
Baltas, I;
Boshier, FAT;
Williams, CA;
Bayzid, N;
Cotic, M;
Guerra-Assunção, JA;
Irish-Tavares, D;
... Mahungu, TW; + view all
(2021)
Post-vaccination COVID-19: A case-control study and genomic analysis of 119 breakthrough infections in partially vaccinated individuals.
Clinical Infectious Diseases
, Article ciab714. 10.1093/cid/ciab714.
(In press).
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Boshier, FAT;
Pang, J;
Penner, J;
Parker, M;
Alders, N;
Bamford, A;
Grandjean, L;
... Breuer, J; + view all
(2021)
Evolution of viral variants in remdesivir-treated and untreated SARS-CoV-2-infected pediatrics patients.
Journal of Medical Virology
10.1002/jmv.27285.
(In press).
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Boshier, FAT;
Venturini, C;
Stirrup, O;
Guerra-Assunção, JA;
Alcolea-Medina, A;
Becket, AH;
Byott, M;
... COG-UK HOCI Variant Substudy consortium*, The COVID-19 Genomics; + view all
(2021)
The Alpha variant was not associated with excess nosocomial SARS-CoV-2 infection in a multi-centre UK hospital study.
Journal of Infection
, 83
(6)
pp. 693-700.
10.1016/j.jinf.2021.09.022.
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Brown, JR;
Roy, S;
Ruis, C;
Yara Romero, E;
Shah, D;
Williams, R;
Breuer, J;
(2016)
Norovirus whole genome sequencing by SureSelect target enrichment: a robust and sensitive method.
Journal of Clinical Microbiology
, 54
(10)
pp. 2530-2537.
10.1128/JCM.01052-16.
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Brown, JR;
Roy, S;
Shah, D;
Williams, CA;
Williams, R;
Dunn, H;
Hartley, J;
... Breuer, J; + view all
(2019)
Norovirus transmission dynamics in a paediatric hospital using full genome sequences.
Clinical Infectious Diseases
, 68
(2)
pp. 222-228.
10.1093/cid/ciy438.
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Brown, JR;
Roy, S;
Tutill, H;
Williams, R;
Breuer, J;
(2017)
Super-infections and relapses occur in chronic norovirus infections.
Journal of Clinical Virology
, 96
pp. 44-48.
10.1016/j.jcv.2017.09.009.
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Brown, L-AK;
Ruis, C;
Clark, I;
Roy, S;
Brown, JR;
Albuquerque, AS;
Patel, SY;
... Lowe, DM; + view all
(2019)
A comprehensive characterization of chronic norovirus infection in immunodeficient hosts.
Journal of Allergy and Clinical Immunology
, 144
(5)
pp. 1450-1453.
10.1016/j.jaci.2019.07.036.
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Chan, MC-W;
Roy, S;
Bonifacio, J;
Zhang, L-Y;
Chhabra, P;
Chan, JCM;
Celma, C;
... NOROPATROL2; + view all
(2021)
Detection of Norovirus Variant GII.4 Hong Kong in Asia and Europe, 2017−2019.
Emerging Infectious Diseases
, 27
(1)
pp. 289-293.
10.3201/eid2701.203351.
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Chhabra, Preeti;
Tully, Damien C;
Mans, Janet;
Niendorf, Sandra;
Barclay, Leslie;
Cannon, Jennifer L;
Montmayeur, Anna M;
... Vinjé, Jan; + view all
(2024)
Emergence of Novel Norovirus GII.4 Variant.
Emerging Infectious Diseases
, 30
(1)
pp. 163-167.
10.3201/eid3001.231003.
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Cudini, J;
Roy, S;
Houldcroft, CJ;
Bryant, JM;
Depledge, DP;
Tutill, H;
Veys, P;
... Breuer, J; + view all
(2019)
Human cytomegalovirus haplotype reconstruction reveals high diversity due to superinfection and evidence of within-host recombination.
Proceedings of the National Academy of Sciences of the United States of America
, 116
(12)
pp. 5693-5698.
10.1073/pnas.1818130116.
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El Bouzidi, K;
Datir, RP;
Kwaghe, V;
Roy, S;
Frampton, D;
Breuer, J;
Ogbanufe, O;
... Gupta, RK; + view all
(2021)
Deep sequencing of HIV-1 reveals extensive subtype variation and drug resistance after failure of first-line antiretroviral regimens in Nigeria.
Journal of Antimicrobial Chemotherapy
10.1093/jac/dkab385.
(In press).
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El Bouzidi, K;
Kemp, SA;
Datir, RP;
Murtala-Ibrahim, F;
Aliyu, A;
Kwaghe, V;
Frampton, D;
... Gupta, RK; + view all
(2020)
High prevalence of integrase mutation L74I in West African HIV-1 subtypes prior to integrase inhibitor treatment.
Journal of Antimicrobial Chemotherapy
10.1093/jac/dkaa033.
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Esona, MD;
Roy, S;
Rungsrisuriyachai, K;
Gautam, R;
Hermelijn, S;
Rey-Benito, G;
Bowen, MD;
(2018)
Molecular characterization of a human G20P[28] rotavirus a strain with multiple genes related to bat rotaviruses.
Infection, Genetics and Evolution
, 57
pp. 166-170.
10.1016/j.meegid.2017.11.025.
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Gil, E;
Roy, S;
Best, T;
Hatcher, J;
Breuer, J;
(2023)
Increasing rhinovirus prevalence in paediatric intensive care patients since the SARS-CoV2 pandemic.
Journal of Clinical Virology
, 166
, Article 105555. 10.1016/j.jcv.2023.105555.
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Guerra-Assunção, José Afonso;
van Kampen, Jeroen JA;
Roy, Sunando;
Remeijer, Lies;
Breuer, Judy;
Verjans, Georges MGM;
(2021)
Cluster of Symptomatic Graft-to-Host Transmission of Herpes Simplex Virus Type 1 in an Endothelial Keratoplasty Setting.
Ophthalmology Science
, 1
(3)
, Article 100051. 10.1016/j.xops.2021.100051.
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Houldcroft, CJ;
Roy, S;
Morfopoulou, S;
Margetts, BK;
Depledge, DP;
Cudini, J;
Shah, D;
... Breuer, J; + view all
(2018)
Use of Whole-genome Sequencing of Adenovirus in Immunocompromised Paediatric Patients to Identify Nosocomial Transmission and Mixed-genotype Infection.
The Journal of Infectious Diseases
, 218
(8)
pp. 1261-1271.
10.1093/infdis/jiy323.
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Illingworth, Christopher JR;
Guerra-Assuncao, Jose A;
Gregg, Samuel;
Charles, Oscar;
Pang, Juanita;
Roy, Sunando;
Abdelnabi, Rana;
... Breuer, Judith; + view all
(2024)
Genetic consequences of effective and suboptimal dosing with mutagenic drugs in a hamster model of SARS-CoV-2 infection.
Virus Evolution
, 10
(1)
, Article veae001. 10.1093/ve/veae001.
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Illingworth, CJR;
Roy, S;
Beale, MA;
Tutill, H;
Williams, R;
Breuer, J;
(2017)
On the effective depth of viral sequence data.
Virus Evolution
, 3
(2)
, Article vex030. 10.1093/ve/vex030.
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Morfopoulou, Sofia;
Buddle, Sarah;
Montaguth, Oscar Enrique Torres;
Atkinson, Laura;
Guerra-Assunção, José Afonso;
Marjaneh, Mahdi Moradi;
Chiozzi, Riccardo Zenezini;
... Breuer, Judith; + view all
(2023)
Genomic investigations of unexplained acute hepatitis in children.
Nature
10.1038/s41586-023-06003-w.
(In press).
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Myers, CE;
Houldcroft, CJ;
Roy, S;
Margetts, BK;
Best, T;
Venturini, C;
Guerra-Assuncao, JA;
... Breuer, J; + view all
(2021)
Using Whole Genome Sequences to Investigate Adenovirus Outbreaks in a Hematopoietic Stem Cell Transplant Unit.
Frontiers in Microbiology
, 12
, Article 667790. 10.3389/fmicb.2021.667790.
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Ortiz, Arturo Torres;
Kendall, Michelle;
Storey, Nathaniel;
Hatcher, James;
Dunn, Helen;
Roy, Sunando;
Williams, Rachel;
... Grandjean, Louis; + view all
(2023)
Within-host diversity improves phylogenetic and transmission reconstruction of SARS-CoV-2 outbreaks.
eLife
, Article e84384. 10.7554/eLife.84384.
(In press).
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Pang, J;
Slyker, JA;
Roy, S;
Bryant, J;
Atkinson, C;
Cudini, J;
Farquhar, C;
... Breuer, J; + view all
(2020)
Mixed cytomegalovirus genotypes in HIV positive mothers show compartmentalization and distinct patterns of transmission to infants.
Elife
, 9
, Article e63199. 10.7554/eLife.63199.
(In press).
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Roy, S;
Hartley, J;
Dunn, H;
Williams, R;
Williams, CA;
Breuer, J;
(2019)
Whole-genome Sequencing Provides Data for Stratifying Infection Prevention and Control Management of Nosocomial Influenza A.
Clinical Infectious Diseases
10.1093/cid/ciz020.
(In press).
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Ruis, C;
Brown, L-AK;
Roy, S;
Atkinson, C;
Williams, R;
Burns, SO;
Yara-Romero, E;
... Lowe, DM; + view all
(2018)
Mutagenesis in Norovirus in Response to Favipiravir Treatment.
New England Journal of Medicine
, 379
(22)
pp. 2173-2176.
10.1056/NEJMc1806941.
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Ruis, C;
Roy, S;
Brown, JR;
Allen, DJ;
Goldstein, RA;
Breuer, J;
(2017)
The emerging GII.P16-GII.4 Sydney 2012 norovirus lineage is circulating worldwide, arose by late-2014 and contains polymerase changes that may increase virus transmission.
PLoS ONE
, 12
(6)
, Article e0179572. 10.1371/journal.pone.0179572.
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Stirrup, O;
Boshier, F;
Venturini, C;
Guerra-Assunção, JA;
Alcolea-Medina, A;
Beckett, A;
Charalampous, T;
... Breuer, J; + view all
(2021)
SARS-CoV-2 lineage B.1.1.7 is associated with greater disease severity among hospitalised women but not men: multicentre cohort study.
BMJ Open Respiratory Research
, 8
(1)
, Article e001029. 10.1136/bmjresp-2021-001029.
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Thomson, E;
Ip, CLC;
Badhan, A;
Christiansen, MT;
Adamson, W;
Ansari, MA;
Bibby, D;
... Simmonds, P; + view all
(2016)
Comparison of Next-Generation Sequencing Technologies for Comprehensive Assessment of Full-Length Hepatitis C Viral Genomes.
Journal Of Clinical Microbiology
, 54
(10)
pp. 2470-2484.
10.1128/JCM.00330-16.
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Volz, E;
Mishra, S;
Chand, M;
Barrett, JC;
Johnson, R;
Geidelberg, L;
Hinsley, WR;
... Ferguson, NM; + view all
(2021)
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England.
Nature
, 593
(7858)
pp. 266-269.
10.1038/s41586-021-03470-x.
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Woodall, Maximillian NJ;
Cujba, Ana-Maria;
Worlock, Kaylee B;
Case, Katie-Marie;
Masonou, Tereza;
Yoshida, Masahiro;
Polanski, Krzysztof;
... Smith, Claire M; + view all
(2024)
Author Correction: Age-specific nasal epithelial responses to SARS-CoV-2 infection.
Nature Microbiology
, 9
(11)
, Article 3076. 10.1038/s41564-024-01757-z.
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Working / discussion paper
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Ortiz, Arturo Torres;
Kendall, Michelle;
Storey, Nathaniel;
Hatcher, James;
Dunn, Helen;
Roy, Sunando;
Williams, Rachel;
... Grandjean, Louis; + view all
(2022)
Within-host diversity improves phylogenetic and transmission reconstruction of SARS-CoV-2 outbreaks.
BioRxiv: Cold Spring Harbor, NY, USA.
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