Browse by UCL people
Group by: Type | Date
Number of items: 16.
2020
Teschendorff, AE;
Zhu, T;
Breeze, CE;
Beck, S;
(2020)
EPISCORE: cell type deconvolution of bulk tissue DNA methylomes from single-cell RNA-Seq data.
Genome Biology
, 21
, Article 221. 10.1186/s13059-020-02126-9.
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Zheng, SC;
Breeze, CE;
Beck, S;
Dong, D;
Zhu, T;
Ma, L;
Ye, W;
... Teschendorff, AE; + view all
(2020)
EpiDISH web server: Epigenetic Dissection of Intra-Sample-Heterogeneity with online GUI.
Bioinformatics
, 36
(6)
pp. 1950-1951.
10.1093/bioinformatics/btz833.
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2019
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Breeze, CE;
Reynolds, AP;
van Dongen, J;
Dunham, I;
Lazar, J;
Neph, S;
Vierstra, J;
... Beck, S; + view all
(2019)
eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data.
Bioinformatics
10.1093/bioinformatics/btz456.
(In press).
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Lechner, M;
Breeze, CE;
O'Mahony, JF;
Masterson, L;
(2019)
Early detection of HPV-associated oropharyngeal cancer.
[Letter].
Lancet
, 393
(10186)
p. 2123.
10.1016/S0140-6736(19)30227-2.
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Lechner, M;
Jones, OS;
Breeze, CE;
Gilson, R;
(2019)
Gender-neutral HPV vaccination in the UK, rising male oropharyngeal cancer rates, and lack of HPV awareness.
[Letter].
Lancet Infectious Diseases
, 19
(2)
pp. 131-132.
10.1016/S1473-3099(18)30802-8.
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Teixeira, VH;
Pipinikas, CP;
Pennycuick, A;
Lee-Six, H;
Chandrasekharan, D;
Beane, J;
Morris, TJ;
... Janes, SM; + view all
(2019)
Deciphering the genomic, epigenomic, and transcriptomic landscapes of pre-invasive lung cancer lesions.
Nature Medicine
, 25
pp. 517-525.
10.1038/s41591-018-0323-0.
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2018
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Zheng, S;
Breeze, C;
Beck, S;
Teschendorff, AE;
(2018)
Identification of differentially methylated cell types in epigenome-wide association studies.
Nature Methods
, 15
1059 -1066.
10.1038/s41592-018-0213-x.
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2017
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Breeze, Charles E;
(2017)
Epigenetics of complex traits and diseases.
Doctoral thesis (Ph.D), UCL (University College London).
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Pan, S;
Lai, H;
Shen, Y;
Breeze, C;
Beck, S;
Hong, T;
Wang, C;
(2017)
DNA methylome analysis reveals distinct epigenetic patterns of ascending aortic dissection and bicuspid aortic valve.
Cardiovascular Research
, 113
(6)
pp. 692-704.
10.1093/cvr/cvx050.
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Teschendorff, AE;
Breeze, CE;
Zheng, SC;
Beck, S;
(2017)
A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies.
BMC Bioinformatics
, 18
(1)
, Article 105. 10.1186/s12859-017-1511-5.
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2016
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Bartlett, TE;
Chindera, K;
McDermott, J;
Breeze, CE;
Cooke, WR;
Jones, A;
Reisel, D;
... Widschwendter, M; + view all
(2016)
Epigenetic reprogramming of fallopian tube fimbriae in BRCA mutation carriers defines early ovarian cancer evolution.
Nature Communications
, 7
, Article ARTN 116. 10.1038/ncomms11620.
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Breeze, CE;
Paul, DS;
van Dongen, J;
Butcher, LM;
Ambrose, JC;
Barrett, JE;
Lowe, R;
... Beck, S; + view all
(2016)
eFORGE: A Tool for Identifying Cell Type-Specific Signal in Epigenomic Data.
Cell Reports
, 17
(8)
pp. 2137-2150.
10.1016/j.celrep.2016.10.059.
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Chen, Y;
Breeze, CE;
Zhen, S;
Beck, S;
Teschendorff, AE;
(2016)
Tissue-independent and tissue-specific patterns of DNA methylation alteration in cancer.
Epigenetics & Chromatin
, 9
, Article 10. 10.1186/s13072-016-0058-4.
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Lewis, J;
Breeze, CE;
Charlesworth, J;
Maclaren, OJ;
Cooper, J;
(2016)
Where next for the reproducibility agenda in computational biology?
BMC Systems Biology
, 10
, Article 52. 10.1186/s12918-016-0288-x.
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Stunnenberg, HG;
Abrignani, S;
Adams, D;
de Almeida, M;
Altucci, L;
Amin, V;
Amit, I;
... Kim, SC; + view all
(2016)
The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery.
Cell
, 167
(5)
pp. 1145-1149.
10.1016/j.cell.2016.11.007.
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Van Dongen, J;
Nivard, MG;
Willemsen, G;
Hottenga, JJ;
Helmer, Q;
Dolan, CV;
Ehli, EA;
... Boomsma, DI; + view all
(2016)
Genetic and environmental influences interact with age and sex in shaping the human methylome.
Nature Communications
, 7
, Article 11115. 10.1038/ncomms11115.
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