Browse by UCL people
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Number of items: 15.
Article
Al Bakir, Maise;
Huebner, Ariana;
Martínez-Ruiz, Carlos;
Grigoriadis, Kristiana;
Watkins, Thomas BK;
Pich, Oriol;
Moore, David A;
... Swanton, Charles; + view all
(2023)
The evolution of non-small cell lung cancer metastases in TRACERx.
Nature
10.1038/s41586-023-05729-x.
(In press).
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Dietzen, Michelle;
Zhai, Haoran;
Lucas, Olivia;
Pich, Oriol;
Barrington, Christopher;
Lu, Wei-Ting;
Ward, Sophia;
... Kanu, Nnennaya; + view all
(2024)
Replication timing alterations are associated with mutation acquisition during breast and lung cancer evolution.
Nature Communications
, 15
(1)
, Article 6039. 10.1038/s41467-024-50107-4.
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Frankell, Alexander M;
Dietzen, Michelle;
Al Bakir, Maise;
Lim, Emilia L;
Karasaki, Takahiro;
Ward, Sophia;
Veeriah, Selvaraju;
... Swanton, Charles; + view all
(2024)
The evolution of lung cancer and impact of subclonal selection in TRACERx (vol 616, pg 525, 2023).
[Corrigendum].
Nature
, 631
, Article E15. 10.1038/s41586-024-07738-w.
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Frankell, AM;
Dietzen, M;
Al Bakir, M;
Lim, EL;
Karasaki, T;
Ward, S;
Veeriah, S;
... Gilbert, K; + view all
(2023)
The evolution of lung cancer and impact of subclonal selection in TRACERx.
Nature
, 616
pp. 525-533.
10.1038/s41586-023-05783-5.
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Grigoriadis, Kristiana;
Huebner, Ariana;
Bunkum, Abigail;
Colliver, Emma;
Frankell, Alexander M;
Hill, Mark S;
Thol, Kerstin;
... McGranahan, Nicholas; + view all
(2024)
CONIPHER: a computational framework for scalable phylogenetic reconstruction with error correction.
Nature Protocols
, 19
pp. 159-183.
10.1038/s41596-023-00913-9.
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Hobor, S;
Al Bakir, M;
Hiley, CT;
Skrzypski, M;
Frankell, AM;
Bakker, B;
Watkins, TBK;
... Clipson, A; + view all
(2024)
Mixed responses to targeted therapy driven by chromosomal instability through p53 dysfunction and genome doubling.
Nature Communications
, 15
, Article 4871. 10.1038/s41467-024-47606-9.
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Lalani, Zubair;
Chu, Gillian;
Hsu, Silas;
Kagawa, Shaw;
Xiang, Michael;
Zaccaria, Simone;
El-Kebir, Mohammed;
(2022)
CNAViz: An interactive webtool for user-guided segmentation of tumor DNA sequencing data.
PLoS Computational Biology
, 18
(10)
, Article e1010614. 10.1371/journal.pcbi.1010614.
(In press).
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Lucas, Olivia;
Ward, Sophia;
Zaidi, Rija;
Bunkum, Abigail;
Frankell, Alexander M;
Moore, David A;
Hill, Mark S;
... Zaccaria, Simone; + view all
(2024)
Characterizing the evolutionary dynamics of cancer proliferation in single-cell clones with SPRINTER.
Nature Genetics
10.1038/s41588-024-01989-z.
(In press).
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Pich, Oriol;
Bailey, Chris;
Watkins, Thomas BK;
Zaccaria, Simone;
Jamal-Hanjani, Mariam;
Swanton, Charles;
(2022)
The translational challenges of precision oncology.
Cancer Cell
, 40
(5)
pp. 458-478.
10.1016/j.ccell.2022.04.002.
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Rajan, Sanjana;
Zaccaria, Simone;
Cannon, Matthew V;
Cam, Maren;
Gross, Amy C;
Raphael, Benjamin J;
Roberts, Ryan D;
(2023)
Structurally Complex Osteosarcoma Genomes Exhibit Limited Heterogeneity within Individual Tumors and across Evolutionary Time.
Cancer Research Communications
, 3
(4)
pp. 564-575.
10.1158/2767-9764.CRC-22-0348.
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Sashittal, Palash;
Zaccaria, Simone;
El-Kebir, Mohammed;
(2022)
Parsimonious Clone Tree Integration in cancer.
Algorithms for Molecular Biology
, 17
(1)
, Article 3. 10.1186/s13015-022-00209-9.
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Satas, G;
Zaccaria, S;
El-Kebir, M;
Raphael, BJ;
(2021)
DeCiFering the elusive cancer cell fraction in tumor heterogeneity and evolution.
Cell Systems
, 12
(10)
1004-1018.e10.
10.1016/j.cels.2021.07.006.
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Sun, H;
Cao, S;
Mashl, RJ;
Mo, C-K;
Zaccaria, S;
Wendl, MC;
Davies, SR;
... Ding, L; + view all
(2021)
Comprehensive characterization of 536 patient-derived xenograft models prioritizes candidatesfor targeted treatment.
Nature Communications
, 12
, Article 5086. 10.1038/s41467-021-25177-3.
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Usaite, Ieva;
Biswas, Dhruva;
Dijkstra, Krijn;
Watkins, Thomas Bk;
Pich, Oriol;
Puttick, Clare;
Angelova, Mihaela;
... Kanu, Nnennaya; + view all
(2023)
Quantifying the impact of immunotherapy on RNA dynamics in cancer.
Journal for ImmunoTherapy of Cancer
, 11
(11)
, Article e007870. 10.1136/jitc-2023-007870.
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Proceedings paper
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Sashittal, P;
Zaccaria, S;
El-Kebir, M;
(2021)
Parsimonious clone tree reconciliation in cancer.
In:
21st International Workshop on Algorithms in Bioinformatics (WABI 2021).
(pp. 9:1-9:21).
Schloss Dagstuhl -- Leibniz-Zentrum für Informatik: Dagstuhl, Germany.
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