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Number of items: 36.
Article
Ahuja, Namrata;
Hwaun, Ernie;
Pungor, Judit R;
Rafiq, Ruhina;
Nemes, Sal;
Sakmar, Taylor;
Vogt, Miranda A;
... Rosenthal, Joshua JC; + view all
(2023)
Creation of an albino squid line by CRISPR-Cas9 and its application for in vivo functional imaging of neural activity.
Current Biology
, 33
(13)
2774-2783.e5.
10.1016/j.cub.2023.05.066.
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Almudi, I;
Vizueta, J;
Wyatt, CDR;
De Mendoza, A;
Marlétaz, F;
Firbas, PN;
Feuda, R;
... Casares, F; + view all
(2020)
Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings.
Nature Communications
, 11
, Article 2631. 10.1038/s41467-020-16284-8.
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Braso-Vives, Marina;
Marletaz, Ferdinand;
Echchiki, Amina;
Mantica, Federica;
Acemel, Rafael D;
Gomez-Skarmeta, Jose L;
Hartasanchez, Diego A;
... Robinson-Rechavi, Marc; + view all
(2022)
Parallel evolution of amphioxus and vertebrate small-scale gene duplications.
Genome Biology
, 23
, Article 243. 10.1186/s13059-022-02808-6.
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Burridge, AK;
Hörnlein, C;
Janssen, AW;
Hughes, M;
Bush, SL;
Marlétaz, F;
Gasca, R;
... Peijnenburg, KTCA; + view all
(2017)
Time-calibrated molecular phylogeny of pteropods.
PLoS One
, 12
(6)
, Article e0177325. 10.1371/journal.pone.0177325.
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Choo, LQ;
Bal, TMP;
Choquet, M;
Smolina, I;
Ramos-Silva, P;
Marletaz, F;
Kopp, M;
... Peijnenburg, KTCA; + view all
(2020)
Novel genomic resources for shelled pteropods: a draft genome and target capture probes for Limacina bulimoides, tested for cross-species relevance.
BMC Genomics
, 21
, Article 11. 10.1186/s12864-019-6372-z.
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Ferguson, L;
Marlétaz, F;
Carter, J-M;
Taylor, WR;
Gibbs, M;
Breuker, CJ;
Holland, PWH;
(2014)
Ancient Expansion of the Hox Cluster in Lepidoptera Generated Four Homeobox Genes Implicated in Extra-Embryonic Tissue Formation.
PLOS Genetics
, 10
(10)
, Article e1004698. 10.1371/journal.pgen.1004698.
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Feuda, R;
Marletaz, F;
Bentley, MA;
Holland, PWH;
(2016)
Conservation, Duplication, and Divergence of Five Opsin Genes in Insect Evolution.
Genome Biology and Evolution
, 8
(3)
pp. 579-587.
10.1093/gbe/evw015.
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Finet, C;
Kassner, VA;
Carvalho, AB;
Chung, H;
Day, JP;
Day, S;
Delaney, EK;
... Marletaz, F; + view all
(2021)
DrosoPhyla: Resources for Drosophilid Phylogeny and Systematics.
Genome Biology and Evolution
, 13
(8)
, Article evab179. 10.1093/gbe/evab179.
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Jolly, J;
Hasegawa, Y;
Sugimoto, C;
Zhang, L;
Kawaura, R;
Sanchez, G;
Gavriouchkina, D;
... Rokhsar, D; + view all
(2022)
Lifecycle, culture, and maintenance of the emerging cephalopod models Euprymna berryi and Euprymna morsei.
Frontiers in Marine Science
, 9
, Article 1039775. 10.3389/fmars.2022.1039775.
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Maeso, I;
Dunwell, TL;
Wyatt, CDR;
Marletaz, F;
Veto, B;
Bernal, JA;
Quah, S;
... Holland, PWH; + view all
(2016)
Evolutionary origin and functional divergence of totipotent cell homeobox genes in eutherian mammals.
BMC Biology
, 14
, Article 45. 10.1186/s12915-016-0267-0.
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Marlétaz, F;
Couloux, A;
Poulain, J;
Labadie, K;
Da Silva, C;
Mangenot, S;
Noel, B;
... Lepage, T; + view all
(2023)
Analysis of the P. lividus sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes.
Cell Genomics
, 3
(4)
, Article 100295. 10.1016/j.xgen.2023.100295.
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Marlétaz, F;
de la Calle-Mustienes, E;
Acemel, RD;
Paliou, C;
Naranjo, S;
Martínez-García, PM;
Cases, I;
... Gómez-Skarmeta, JL; + view all
(2023)
The little skate genome and the evolutionary emergence of wing-like fins.
Nature
, 616
(7957)
pp. 495-503.
10.1038/s41586-023-05868-1.
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Marlétaz, Ferdinand;
Timoshevskaya, Nataliya;
Timoshevskiy, Vladimir A;
Parey, Elise;
Simakov, Oleg;
Gavriouchkina, Daria;
Suzuki, Masakazu;
... Rokhsar, Daniel S; + view all
(2024)
The hagfish genome and the evolution of vertebrates.
Nature
, 627
pp. 811-820.
10.1038/s41586-024-07070-3.
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Marletaz, F;
Firbas, PN;
Maeso, I;
Tena, JJ;
Bogdanovic, O;
Perry, M;
Wyatt, CDR;
... Irimia, M; + view all
(2018)
Amphioxus functional genomics and the origins of vertebrate gene regulation.
Nature
, 564
pp. 64-70.
10.1038/s41586-018-0734-6.
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Marlétaz, F;
Gilles, A;
Caubit, X;
Perez, Y;
Dossat, C;
Samain, S;
Gyapay, G;
... Le Parco, Y; + view all
(2008)
Chætognath transcriptome reveals ancestral and unique features among bilaterians.
Genome Biology
, 9
, Article R94. 10.1186/gb-2008-9-6-r94.
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Marlétaz, F;
Gyapay, G;
Le Parco, Y;
(2010)
High Level of Structural Polymorphism Driven by Mobile Elements in the Hox Genomic Region of the Chaetognath Spadella cephaloptera.
Genome Biology and Evolution
, 2
pp. 665-677.
10.1093/gbe/evq047.
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Marlétaz, F;
Le Parco, Y;
(2008)
Careful with understudied phyla: The case of chaetognath.
BMC Evolutionary Biology
, 8
, Article 251. 10.1186/1471-2148-8-251.
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Marletaz, F;
Le Parco, Y;
Liu, S;
Peijnenburg, KTCA;
(2017)
Extreme Mitogenomic Variation in Natural Populations of Chaetognaths.
Genome Biology and Evolution
, 9
(6)
pp. 1374-1384.
10.1093/gbe/evx090.
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Marlétaz, F;
Maeso, I;
Faas, L;
Isaacs, HV;
Holland, PWH;
(2015)
Cdx ParaHox genes acquired distinct developmental roles after gene duplication in vertebrate evolution.
BMC Biology
, 13
, Article 56. 10.1186/s12915-015-0165-x.
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Marletaz, F;
Peijnenburg, KTCA;
Goto, T;
Satoh, N;
Rokhsar, DS;
(2019)
A New Spiralian Phylogeny Places the Enigmatic Arrow Worms among Gnathiferans.
Current Biology
, 29
(2)
312-318.e3.
10.1016/j.cub.2018.11.042.
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Martín-Durán, JM;
Vellutini, BC;
Marlétaz, F;
Cetrangolo, V;
Cvetesic, N;
Thiel, D;
Henriet, S;
... Hejnol, A; + view all
(2020)
Conservative route to genome compaction in a miniature annelid.
Nature Ecology & Evolution
10.1038/s41559-020-01327-6.
(In press).
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Martín-Zamora, Francisco M;
Liang, Yan;
Guynes, Kero;
Carrillo-Baltodano, Allan M;
Davies, Billie E;
Donnellan, Rory D;
Tan, Yongkai;
... Martín-Durán, José M; + view all
(2023)
Annelid functional genomics reveal the origins of bilaterian life cycles.
Nature
10.1038/s41586-022-05636-7.
(In press).
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Miryeganeh, M;
Marlétaz, F;
Gavriouchkina, D;
Saze, H;
(2022)
De novo genome assembly and in natura epigenomics reveal salinity-induced DNA methylation in the mangrove tree Bruguiera gymnorhiza.
New Phytologist
, 233
(5)
pp. 2094-2110.
10.1111/nph.17738.
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Parey, Elise;
Ortega-Martinez, Olga;
Delroisse, Jerome;
Piovani, Laura;
Czarkwiani, Anna;
Dylus, David;
Arya, Srishti;
... Marletaz, Ferdinand; + view all
(2024)
The brittle star genome illuminates the genetic basis of animal appendage regeneration.
Nature Ecology & Evolution
, 8
(8)
pp. 1505-1521.
10.1038/s41559-024-02456-y.
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Peijnenburg, KTCA;
Janssen, AW;
Wall-Palmer, D;
Goetze, E;
Maas, AE;
Todd, JA;
Marlétaz, F;
(2020)
The origin and diversification of pteropods precede past perturbations in the Earth's carbon cycle.
Proceedings of the National Academy of Sciences of the United States of America
10.1073/pnas.1920918117.
(In press).
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Piovani, Laura;
Marlétaz, Ferdinand;
(2023)
Single-cell transcriptomics refuels the exploration of spiralian biology.
Briefings in Functional Genomics
, Article elad038. 10.1093/bfgp/elad038.
(In press).
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Pisani, Davide;
Rossi, Maria Eleonora;
Marlétaz, Ferdinand;
Feuda, Roberto;
(2022)
Phylogenomics: Is less more when using large-scale datasets?
Current Biology
, 32
(24)
R1340-R1342.
10.1016/j.cub.2022.11.019.
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Ramos-Silva, P;
Wall-Palmer, D;
Marlétaz, F;
Marin, F;
Peijnenburg, KTCA;
(2021)
Evolution and biomineralization of pteropod shells.
Journal of Structural Biology
, 213
(4)
, Article 107779. 10.1016/j.jsb.2021.107779.
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Sanchez, G;
Fernández-Álvarez, FÁ;
Taite, M;
Sugimoto, C;
Jolly, J;
Simakov, O;
Marlétaz, F;
... Rokhsar, DS; + view all
(2021)
Phylogenomics illuminates the evolution of bobtail and bottletail squid (order Sepiolida).
Communications Biology
, 4
, Article 819. 10.1038/s42003-021-02348-y.
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Sanchez, G;
Jolly, J;
Reid, A;
Sugimoto, C;
Azama, C;
Marletaz, F;
Simakov, O;
(2019)
New bobtail squid (Sepiolidae: Sepiolinae) from the Ryukyu islands revealed by molecular and morphological analysis.
Communications Biology
, 2
, Article 465. 10.1038/s42003-019-0661-6.
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Schiffer, Philipp H;
Natsidis, Paschalis;
Leite, Daniel J;
Robertson, Helen E;
Lapraz, François;
Marlétaz, Ferdinand;
Fromm, Bastian;
... Telford, Maximilian J; + view all
(2024)
Insights into early animal evolution form the genome of the xenacoelomorph worm Xenoturbella bocki.
eLife
, 13
, Article e94948. 10.7554/eLife.94948.
(In press).
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Simakov, O;
Bredeson, J;
Berkoff, K;
Marletaz, F;
Mitros, T;
Schultz, DT;
O’Connell, BL;
... Rokhsar, DS; + view all
(2022)
Deeply conserved synteny and the evolution of metazoan chromosomes.
Science advances
, 8
(5)
, Article eabi5884. 10.1126/sciadv.abi5884.
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Simakov, O;
Kawashima, T;
Marletaz, F;
Jenkins, J;
Koyanagi, R;
Mitros, T;
Hisata, K;
... Gerhart, J; + view all
(2015)
Hemichordate genomes and deuterostome origins.
Nature
, 527
pp. 459-465.
10.1038/nature16150.
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Simakov, O;
Marletaz, F;
Cho, S-J;
Edsinger-Gonzales, E;
Havlak, P;
Hellsten, U;
Kuo, D-H;
... Rokhsar, DS; + view all
(2013)
Insights into bilaterian evolution from three spiralian genomes.
Nature
, 493
(7433)
pp. 526-531.
10.1038/nature11696.
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Simakov, O;
Marletaz, F;
Yue, J-X;
O'Connell, B;
Jenkins, J;
Brandt, A;
Calef, R;
... Rokhsar, DS; + view all
(2020)
Deeply conserved synteny resolves early events in vertebrate evolution.
Nature Ecology & Evolution
10.1038/s41559-020-1156-z.
(In press).
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Xu, F;
Marlétaz, F;
Gavriouchkina, D;
Liu, X;
Sauka-Spengler, T;
Zhang, G;
Holland, PWH;
(2021)
Evidence from oyster suggests an ancient role for Pdx in regulating insulin gene expression in animals.
Nature Communications
, 12
, Article 3117. 10.1038/s41467-021-23216-7.
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