Browse by UCL people
Group by: Type | Date
Number of items: 27.
Article
Boers, TGW;
Hu, Y;
Gibson, E;
Barratt, DC;
Bonmati, E;
Krdzalic, J;
van der Heijden, F;
... Huisman, H; + view all
(2020)
Interactive 3D U-net for the segmentation of the pancreas in computed tomography scans.
Physics in Medicine & Biology
, 65
(6)
, Article 065002. 10.1088/1361-6560/ab6f99.
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Bonmati, E;
Bardera, A;
Boada, I;
(2017)
Brain parcellation based on information theory.
Computer Methods and Programs in Biomedicine
, 151
pp. 203-212.
10.1016/j.cmpb.2017.07.012.
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Bonmati, E;
Bardera, A;
Feixas, M;
Boada, I;
(2018)
Novel Brain Complexity Measures Based on Information Theory.
Entropy
, 20
(7)
, Article 491. 10.3390/e20070491.
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Bonmati, E;
Hu, Y;
Gibson, E;
Uribarri, L;
Keane, G;
Gurusami, K;
Davidson, B;
... Barratt, DC; + view all
(2018)
Determination of optimal ultrasound planes for the initialisation of image registration during endoscopic ultrasound-guided procedures.
International Journal of Computer Assisted Radiology and Surgery
, 13
(6)
pp. 875-883.
10.1007/s11548-018-1762-2.
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Bonmati, E;
Hu, Y;
Sindhwani, N;
Dietz, HP;
D'hooge, J;
Barratt, D;
Deprest, J;
(2018)
Automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalizing neural network.
Journal of Medical Imaging
, 5
(2)
, Article 021206. 10.1117/1.JMI.5.2.021206.
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Bonmati, E;
Hu, Y;
Villarini, B;
Rodell, R;
Martin, P;
Han, L;
Donaldson, I;
... Barratt, DC; + view all
(2018)
Technical Note: Error metrics for estimating the accuracy of needle/instrument placement during transperineal MR/US-guided prostate interventions.
Medical Physics
10.1002/mp.12814.
(In press).
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Fu, Y;
Brown, NM;
Saeed, SU;
Casamitjana, A;
Baum, ZMC;
Delaunay, R;
Yang, Q;
... Hu, Y; + view all
(2020)
DeepReg: a deep learning toolkit for medical image registration.
The Journal of Open Source Software
, 5
(55)
, Article 2705. 10.21105/joss.02705.
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Ghavami, N;
Hu, Y;
Bonmati, E;
Rodell, R;
Gibson, E;
Moore, C;
Barratt, D;
(2018)
Integration of spatial information in convolutional neural networks for automatic segmentation of intraoperative transrectal ultrasound images.
Journal of Medical Imaging
, 6
(1)
, Article 011003. 10.1117/1.JMI.6.1.011003.
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Ghavami, N;
Hu, Y;
Gibson, E;
Bonmati, E;
Emberton, M;
Moore, CM;
Barratt, DC;
(2019)
Automatic segmentation of prostate MRI using convolutional neural networks: Investigating the impact of network architecture on the accuracy of volume measurement and MRI-ultrasound registration.
Medical Image Analysis
, 58
, Article 101558. 10.1016/j.media.2019.101558.
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Gibson, E;
Giganti, F;
Hu, Y;
Bonmati, E;
Bandula, S;
Gurusamy, K;
Davidson, B;
... Barratt, DC; + view all
(2018)
Automatic Multi-organ Segmentation on Abdominal CT with Dense V-networks.
IEEE Transactions on Medical Imaging
, 37
(8)
pp. 1822-1834.
10.1109/TMI.2018.2806309.
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Hamid, S;
Donaldson, IA;
Hu, Y;
Rodell, R;
Villarini, B;
Bonmati, E;
Tranter, P;
... Ahmed, HU; + view all
(2019)
The SmartTarget Biopsy Trial: A Prospective, Within-person Randomised, Blinded Trial Comparing the Accuracy of Visual-registration and Magnetic Resonance Imaging/Ultrasound Image-fusion Targeted Biopsies for Prostate Cancer Risk Stratification.
European Urology
, 75
(5)
pp. 733-740.
10.1016/j.eururo.2018.08.007.
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Hu, Y;
Modat, M;
Gibson, E;
Li, W;
Ghavami, N;
Bonmati, E;
Wang, G;
... Vercauteren, T; + view all
(2018)
Weakly-supervised convolutional neural networks for multimodal image registration.
Medical Image Analysis
, 49
pp. 1-13.
10.1016/j.media.2018.07.002.
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Ramalhinho, João;
Dowrick, Thomas;
Bonmati, Ester;
Clarkson, Matthew J;
(2023)
Fan-Slicer: A Pycuda Package for Fast Reslicing of Ultrasound Shaped Planes.
Journal of Open Research Software
, 11
(1)
, Article 3. 10.5334/jors.422.
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Saeed, Shaheer U;
Ramalhinho, João;
Montaña-Brown, Nina;
Bonmati, Ester;
Pereira, Stephen P;
Davidson, Brian;
Clarkson, Matthew J;
(2025)
Guided ultrasound acquisition for nonrigid image registration using reinforcement learning.
Medical Image Analysis
, 102
, Article 103555. 10.1016/j.media.2025.103555.
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Saeed, Shaheer U;
Ramalhinho, João;
Pinnock, Mark;
Shen, Ziyi;
Fu, Yunguan;
Montaña-Brown, Nina;
Bonmati, Ester;
... Hu, Yipeng; + view all
(2024)
Active learning using adaptable task-based prioritisation.
Medical Image Analysis
, 95
, Article 103181. 10.1016/j.media.2024.103181.
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Thompson, S;
Dowrick, T;
Ahmad, M;
Xiao, G;
Koo, B;
Bonmati, E;
Kahl, K;
(2020)
SciKit-Surgery: compact libraries for surgical navigation.
International Journal of Computer Assisted Radiology and Surgery
10.1007/s11548-020-02180-5.
(In press).
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Xiao, G;
Bonmati, E;
Thompson, S;
Evans, J;
Hipwell, J;
Nikitichev, D;
Gurusamy, K;
... Clarkson, MJ; + view all
(2018)
Electromagnetic tracking in image‐guided laparoscopic surgery: Comparison with optical tracking and feasibility study of a combined laparoscope and laparoscopic ultrasound system.
Medical Physics
, 45
(11)
pp. 5094-5104.
10.1002/mp.13210.
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Proceedings paper
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Baum, ZMC;
Bonmati, E;
Cristoni, L;
Walden, A;
Prados, F;
Kanber, B;
Barratt, DC;
... Hu, Y; + view all
(2021)
Image quality assessment for closed-loop computer-assisted lung ultrasound.
In:
Proceedings of the Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling (SPIE).
(pp. pp. 1-7).
The International Society for Optics and Photonics (SPIE)
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Bonmati, E;
Hu, Y;
Sindhwani, N;
Dietz, HP;
D'hooge, J;
Barratt, DC;
Deprest, J;
(2018)
Technical note: automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network.
In: Fei, B and Webster, RJ, (eds.)
(Proceedings) Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions and Modeling.
(pp. 105760K-105760K).
SPIE
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Bonmati Coll, E;
Hu, Y;
Gurusamy, K;
Davidson, B;
Pereira, SP;
Clarkson, MJ;
Barratt, DC;
(2017)
Assessment of Electromagnetic Tracking Accuracy for Endoscopic Ultrasound.
In: Peters, T and Yang, G and Navab, N and Mori, K and Luo, X and Reichl, T and McLeod, J, (eds.)
Computer-Assisted and Robotic Endoscopy.
(pp. pp. 36-47).
Springer International Publishing AG
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Ghavami, N;
Hu, Y;
Bonmati, E;
Rodell, R;
Gibson, E;
Moore, CM;
Barratt, DC;
(2018)
Automatic slice segmentation of intraoperative transrectal ultrasound images using convolutional neural networks.
In: Fei, B and Webster, RJ, (eds.)
Proceedings Volume 10576, Medical Imaging 2018: Image-Guided Procedures, Robotic Interventions, and Modeling.
(pp. p. 1057603).
SPIE: Houston, Texas, United States.
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Gibson, E;
Giganti, F;
Hu, Y;
Bonmati, E;
Bandula, S;
Gurusamy, K;
Davidson, BR;
... Barratt, DC; + view all
(2017)
Towards image-guided pancreas and biliary endoscopy: Automatic multi-organ segmentation on abdominal CT with dense dilated networks.
In: Descoteaux, M and Maier-Hein, L and Franz, A and Jannin, P and Collins, D and Duchesne, S, (eds.)
(Proceedings) Medical Image Computing and Computer Assisted Intervention − MICCAI 2017.
(pp. pp. 728-736).
Springer: Switzerland, Cham.
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Grimwood, A;
Ramalhinho, J;
Baum, ZMC;
Montaña-Brown, N;
Johnson, GJ;
Hu, Y;
Clarkson, MJ;
... Bonmati, E; + view all
(2021)
Endoscopic Ultrasound Image Synthesis Using a Cycle-Consistent Adversarial Network.
In:
Simplifying Medical Ultrasound. ASMUS 2021.
(pp. pp. 169-178).
Springer: Cham, Switzerland.
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Grimwood, A;
McNair, H;
Hu, Y;
Bonmati, E;
Barratt, DC;
Harris, EJ;
(2020)
Assisted Probe Positioning for Ultrasound Guided Radiotherapy Using Image Sequence Classification.
In: Martel, AL and Abolmaesumi, P and Stoyanov, D and Mateus, D and Zuluaga, MA and Zhou, SK and Racoceanu, D and Joskowicz, L, (eds.)
Medical Image Computing and Computer Assisted Intervention – MICCAI 2020.
(pp. pp. 544-552).
Springer: Cham, Switzerland.
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Hu, Y;
Gibson, E;
Ghavami, N;
Bonmati, E;
Moore, CM;
Emberton, M;
Vercauteren, T;
... Barratt, DC; + view all
(2018)
Adversarial deformation regularization for training image registration neural networks.
In: Frangi, AF and Schnabel, JA and Davatzikos, C and Alberola-López, C and Fichtinger, G, (eds.)
Medical Image Computing and Computer Assisted Intervention – MICCAI 2018: 21st International Conference, Granada, Spain, September 16-20, 2018, Proceedings, Part I.
(pp. pp. 774-782).
Springer: Cham, Switzerland.
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Hu, Y;
Modat, M;
Gibson, E;
Ghavami, N;
Bonmati, E;
Moore, CM;
Emberton, M;
... Vercauteren, T; + view all
(2018)
Label-driven weakly-supervised learning for multimodal deformable image registration.
In:
2018 IEEE 15th International Symposium on Biomedical Imaging.
(pp. pp. 1070-1074).
IEEE
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Conference item
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Orczyk, C;
Hu, YP;
Gibson, E;
El-Shater Bosaily, A;
Kirkham, A;
Punwani, S;
Brown, L;
... Ahmed, HU; + view all
(2017)
Should We Aim for the Centre of an MRI Prostate Lesion? Correlation Between mpMRI and 3-dimensional 5mm Transperineal Prostate Mapping Biopsies From the PROMIS Trial.
Presented at: AUA Annual Meeting, Boston, USA.
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