Vesztrocy, AW;
Dessimoz, C;
(2017)
A Gene Ontology Tutorial in Python.
In: Dessimoz, C and Škunca, N, (eds.)
The Gene Ontology Handbook.
(pp. 221-229).
Humana Press: New York, NY, USA.
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Abstract
This chapter is a tutorial on using Gene Ontology resources in the Python programming language. This entails querying the Gene Ontology graph, retrieving Gene Ontology annotations, performing gene enrichment analyses, and computing basic semantic similarity between GO terms. An interactive version of the tutorial, including solutions, is available at http://gohandbook.org .
| Type: | Book chapter |
|---|---|
| Title: | A Gene Ontology Tutorial in Python |
| ISBN-13: | 978-1-4939-3743-1 |
| Open access status: | An open access version is available from UCL Discovery |
| DOI: | 10.1007/978-1-4939-3743-1_16 |
| Publisher version: | https://doi.org/10.1007/978-1-4939-3743-1_16 |
| Language: | English |
| Additional information: | © The Author(s) 2017 This chapter is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits use, duplication, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, a link is provided to the Creative Commons license and any changes made are indicated. The images or other third party material in this chapter are included in the work’s Creative Commons license, unless indicated otherwise in the credit line; if such material is not included in the work’s Creative Commons license and the respective action is not permitted by statutory regulation, users will need to obtain permission from the license holder to duplicate, adapt or reproduce the material. |
| Keywords: | Gene Ontology, Python, Tutorial, Animals, Gene Ontology, Humans, Internet, Molecular Sequence Annotation, Semantics, Software |
| UCL classification: | UCL UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Life Sciences UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Life Sciences > Div of Biosciences UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Life Sciences > Div of Biosciences > Genetics, Evolution and Environment |
| URI: | https://discovery.ucl.ac.uk/id/eprint/1527634 |
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