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Evaluation of Uncertainty-Aware Multi-software Ensembles for Hippocampal Segmentation

Oliveira-Stahl, G; Schroder, A; Moggridge, J; Salhab, HA; Micallef, C; Barnes, J; Cardoso, MJ; ... Grech-Sollars, M; + view all (2026) Evaluation of Uncertainty-Aware Multi-software Ensembles for Hippocampal Segmentation. In: Sudre, Carole H and Hoque, Mobarak I and Mehta, Raghav and Ouyang, Cheng and Qin, Chen and Rakic, Marianne and Wells, William M, (eds.) Uncertainty for Safe Utilization of Machine Learning in Medical Imaging. UNSURE 2025. (pp. 45-55). Springer Nature Switzerland: Cham, Switzerland. (In press).

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Abstract

Accurate hippocampal segmentation can be a useful tool for diagnosing and monitoring neurological conditions such as Alzheimer’s disease and epilepsy. While numerous automated segmentation methods exist, their clinical adoption remains limited. Reliable uncertainty assessment can enhance trust and facilitate clinical translation. This study evaluates five heterogeneous hippocampal segmentation methods InnerEye, ASHS, FastSurfer, HippoSeg, and FreeSurfer—across two dementia datasets and one epilepsy dataset. The sub-ensemble containing InnerEye, FastSurfer, and HippoSeg emerged as both accurate and efficient, highlighting the feasibility of balancing computational cost and performance. Additionally, ensemble-derived uncertainty quantification with sample variance, mutual information, and predictive entropy is shown to reduce inaccurate segmentations by flagging low-confidence cases, potentially providing a mechanism for automatically escalating ambiguous cases for expert assessment.

Type: Book chapter
Title: Evaluation of Uncertainty-Aware Multi-software Ensembles for Hippocampal Segmentation
ISBN-13: 9783032065926
DOI: 10.1007/978-3-032-06593-3_5
Publisher version: https://doi.org/10.1007/978-3-032-06593-3_5
Language: English
Additional information: This version is the author accepted manuscript. For information on re-use, please refer to the publisher’s terms and conditions.
Keywords: Uncertainty estimation Ensemble Hippocampal segmentation Carbon footprint
UCL classification: UCL
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences
UCL > Provost and Vice Provost Offices > UCL BEAMS
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Brain Sciences
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Brain Sciences > UCL Queen Square Institute of Neurology
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Population Health Sciences > Institute of Cardiovascular Science
UCL > Provost and Vice Provost Offices > UCL BEAMS > Faculty of Engineering Science > Dept of Computer Science
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Brain Sciences > UCL Queen Square Institute of Neurology > Neurodegenerative Diseases
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Population Health Sciences > Institute of Cardiovascular Science > Population Science and Experimental Medicine
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Population Health Sciences > Institute of Cardiovascular Science > Population Science and Experimental Medicine > MRC Unit for Lifelong Hlth and Ageing
URI: https://discovery.ucl.ac.uk/id/eprint/10219638
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