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CoTCoNet: An optimized coupled transformer-convolutional network with an adaptive graph reconstruction for leukemia detection

Raghaw, Chandravardhan Singh; Sharma, Arnav; Bansal, Shubhi; Rehman, Mohammad Zia Ur; Kumar, Nagendra; (2024) CoTCoNet: An optimized coupled transformer-convolutional network with an adaptive graph reconstruction for leukemia detection. Computers in Biology and Medicine , 179 , Article 108821. 10.1016/j.compbiomed.2024.108821. Green open access

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Abstract

Background: Swift and accurate blood smear analyses are crucial for diagnosing leukemia and other hematological malignancies. However, manual leukocyte count and morphological evaluation remain time-consuming and prone to errors. Additionally, conventional image processing methods struggle to differentiate cells due to visual similarities between malignant and benign cell morphology. // Method: In response to above challenges, we propose Coupled Transformer Convolutional Network (CoTCoNet) framework for leukemia classification. CoTCoNet integrates dual-feature extraction to capture long-range global features and fine-grained spatial patterns, facilitating the identification of complex hematological characteristics. Additionally, the framework employs a graph-based module to uncover hidden, biologically relevant features of leukocyte cells, along with a Population-based Meta-Heuristic Algorithm for feature selection and optimization. Furthermore, we introduce a novel combination of leukocyte segmentation and synthesis, which isolates relevant regions while augmenting the training dataset with realistic leukocyte samples. This strategy isolates relevant regions while augmenting the training data with realistic leukocyte samples, enhancing feature extraction, and addressing data scarcity without compromising data integrity. // Results: We evaluated CoTCoNet on a dataset of 16,982 annotated cells, achieving an accuracy of 0.9894 and an F1-Score of 0.9893. We tested CoTCoNet on four diverse, publicly available datasets (including those above) to assess generalizability. Results demonstrate a significant performance improvement over existing state-of-the-art approaches. // Conclusions: CoTCoNet represents a significant advancement in leukemia classification, offering enhanced accuracy and efficiency compared to traditional methods. By incorporating explainable visualizations that closely align with cell annotations, the framework provides deeper insights into its decision-making process, further solidifying its potential in clinical settings.

Type: Article
Title: CoTCoNet: An optimized coupled transformer-convolutional network with an adaptive graph reconstruction for leukemia detection
Location: United States
Open access status: An open access version is available from UCL Discovery
DOI: 10.1016/j.compbiomed.2024.108821
Publisher version: https://doi.org/10.1016/j.compbiomed.2024.108821
Language: English
Additional information: This version is the author accepted manuscript. For information on re-use, please refer to the publisher’s terms and conditions.
Keywords: Acute lymphoblastic leukemia; Convolutional neural networks; Transformer; Cell classification; Deep learning
UCL classification: UCL
UCL > Provost and Vice Provost Offices > UCL BEAMS
UCL > Provost and Vice Provost Offices > UCL BEAMS > Faculty of Engineering Science > Dept of Computer Science
URI: https://discovery.ucl.ac.uk/id/eprint/10209523
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