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Insights into the implementation of a whole genome sequencing report form (SRF) to reduce nosocomial SARS-CoV-2 in UK hospitals within an unfolding pandemic: A qualitative process evaluation using normalisation process theory

Leiser, Ruth; McLeod, Julie; Mapp, Fiona; Stirrup, Oliver; Blackstone, James; Illingworth, Christopher JR; Nebbia, Gaia; ... Flowers, Paul; + view all (2025) Insights into the implementation of a whole genome sequencing report form (SRF) to reduce nosocomial SARS-CoV-2 in UK hospitals within an unfolding pandemic: A qualitative process evaluation using normalisation process theory. PLoS ONE , 20 (4) , Article e0321534. 10.1371/journal.pone.0321534. Green open access

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Abstract

Background: Here we report on a process evaluation conducted as part of a large multisite non-randomised trial of the effectiveness of a novel whole genome sequence report form (SRF) to reduce nosocomial SARS-CoV-2 through changing infection prevention and control (IPC) behaviours during the COVID –19 pandemic. We detail how the SRF was implemented across a heterogeneous purposive sub-sample of hospital trial sites (n=5/14). // Methods: We conducted in-depth interviews from diverse professional staff (N=39). Deductive and inductive thematic analysis initially explored participants’ accounts of implementing the SRF. The resulting themes, concerning the way the SRF was used within sites, were then coded in relation to the key tenets of normalisation process theory (NPT). // Results: Factors that enabled the implementation of the SRF included: elements of the context such as health care professional passion; the existence of whole genome sequencing (WGS) infrastructure; effective communication channels, the creation of new connections across professionals and teams; the integration of SRF-led discussions within pre-existing meetings and the ability of a site to achieve a rapid turnaround time. In contrast, we found factors that constrained the use of the SRF included elements of the context such as the impact of the Alpha-variant overwhelming hospitals. In turn, dealing with COVID-19 breached the limited capacity of infection prevention and control (IPC) to respond to the SRF and ensure its routinisation. // Conclusion: We show preliminary support for this SRF being an acceptable, useable and potentially scalable way of enhancing existing IPC activities for viral respiratory infections. However, the context of both the trial and the alpha wave of COVID-19 limit confidence in these insights. // Clinical trial number: https://www.isrctn.com/ISRCTN50212645, Registration date 20/05/2020

Type: Article
Title: Insights into the implementation of a whole genome sequencing report form (SRF) to reduce nosocomial SARS-CoV-2 in UK hospitals within an unfolding pandemic: A qualitative process evaluation using normalisation process theory
Location: United States
Open access status: An open access version is available from UCL Discovery
DOI: 10.1371/journal.pone.0321534
Publisher version: https://doi.org/10.1371/journal.pone.0321534
Language: English
Additional information: Copyright © 2025 Leiser et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, https://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
UCL classification: UCL
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Population Health Sciences > Inst of Clinical Trials and Methodology
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Population Health Sciences > Institute for Global Health
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Population Health Sciences > UCL GOS Institute of Child Health
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Population Health Sciences > Inst of Clinical Trials and Methodology > Comprehensive CTU at UCL
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Population Health Sciences > UCL GOS Institute of Child Health > Infection, Immunity and Inflammation Dept
URI: https://discovery.ucl.ac.uk/id/eprint/10207643
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