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A geological timescale for bacterial evolution and oxygen adaptation

Davín, Adrián A; Woodcroft, Ben J; Soo, Rochelle M; Morel, Benoit; Murali, Ranjani; Schrempf, Dominik; Clark, James W; ... Szöllősi, Gergely J; + view all (2025) A geological timescale for bacterial evolution and oxygen adaptation. Science , 388 (6742) , Article eadp1853. 10.1126/science.adp1853. Green open access

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Abstract

Microbial life has dominated Earth’s history but left a sparse fossil record, greatly hindering our understanding of evolution in deep time. However, bacterial metabolism has left signatures in the geochemical record, most conspicuously the Great Oxidation Event (GOE). We combine machine learning and phylogenetic reconciliation to infer ancestral bacterial transitions to aerobic lifestyles, linking them to the GOE to calibrate the bacterial time tree. Extant bacterial phyla trace their diversity to the Archaean and Proterozoic, and bacterial families prior to the Phanerozoic. We infer that most bacterial phyla were ancestrally anaerobic and adopted aerobic lifestyles after the GOE. However, in the cyanobacterial ancestor, aerobic metabolism likely predated the GOE, which may have facilitated the evolution of oxygenic photosynthesis.

Type: Article
Title: A geological timescale for bacterial evolution and oxygen adaptation
Location: United States
Open access status: An open access version is available from UCL Discovery
DOI: 10.1126/science.adp1853
Publisher version: https://doi.org/10.1126/science.adp1853
Language: English
Additional information: This version is the author accepted manuscript. For information on re-use, please refer to the publisher’s terms and conditions.
Keywords: Adaptation, Bacteria, Biological Evolution, Cyanobacteria, Machine Learning, Oxidation-Reduction, Oxygen, Photosynthesis, Phylogeny, Physiological
UCL classification: UCL
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Life Sciences
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Life Sciences > Div of Biosciences
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Life Sciences > Div of Biosciences > Genetics, Evolution and Environment
URI: https://discovery.ucl.ac.uk/id/eprint/10207500
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