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Virtual Homonuclear Decoupling in Direct Detection Nuclear Magnetic Resonance Experiments using Deep Neural Networks

Karunanithy, G; Mackenzie, HW; Hansen, DF; (2021) Virtual Homonuclear Decoupling in Direct Detection Nuclear Magnetic Resonance Experiments using Deep Neural Networks. Journal of the American Chemical Society , 143 (41) pp. 16935-16942. 10.1021/jacs.1c04010. Green open access

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Abstract

Nuclear magnetic resonance (NMR) experiments are frequently complicated by the presence of homonuclear scalar couplings. For the growing body of biomolecular 13C-detected NMR methods, one-bond 13C–13C couplings significantly reduce sensitivity and resolution. The solution to this problem has typically been to perform virtual decoupling by recording multiple spectra and taking linear combinations. Here, we propose an alternative method of virtual decoupling using deep neural networks, which only requires a single spectrum and gives a significant boost in resolution while reducing the minimum effective phase cycles of the experiments by at least a factor of 2. We successfully apply this methodology to virtually decouple in-phase CON (13CO–15N) protein NMR spectra, 13C–13C correlation spectra of protein side chains, and 13Cα-detected protein 13Cα–13CO spectra where two large homonuclear couplings are present. The deep neural network approach effectively decouples spectra with a high degree of flexibility, including in cases where existing methods fail, and facilitates the use of simpler pulse sequences.

Type: Article
Title: Virtual Homonuclear Decoupling in Direct Detection Nuclear Magnetic Resonance Experiments using Deep Neural Networks
Open access status: An open access version is available from UCL Discovery
DOI: 10.1021/jacs.1c04010
Publisher version: https://doi.org/10.1021/jacs.1c04010
Language: English
Additional information: This version is the author accepted manuscript. For information on re-use, please refer to the publisher’s terms and conditions.
Keywords: Artificial Intelligence, Biophysics, Machine Learning, NMR Spectroscopy, Proteins
UCL classification: UCL
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Life Sciences
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Life Sciences > Div of Biosciences
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Life Sciences > Div of Biosciences > Structural and Molecular Biology
URI: https://discovery.ucl.ac.uk/id/eprint/10135175
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