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Number of items: 14.
Article
Barbera, P;
Kozlov, A;
Czech, L;
Morel, B;
Darriba, D;
Flouris, T;
Stamatakis, A;
(2019)
EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences.
Systematic Biology
, 68
(2)
10.1093/sysbio/syy054.
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Darriba, D;
Flouri, T;
Stamatakis, A;
(2018)
The State of Software for Evolutionary Biology.
Molecular Biology and Evolution
, 35
(5)
pp. 1037-1046.
10.1093/molbev/msy014.
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Darriba, D;
Posada, D;
Kozlov, AM;
Stamatakis, A;
Morel, B;
Flouri, T;
(2020)
ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models.
Molecular Biology and Evolution
, 37
(1)
pp. 291-294.
10.1093/molbev/msz189.
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Flouris, T;
Jiao, X;
Rannala, B;
Yang, Z;
(2018)
Species Tree Inference with BPP Using Genomic Sequences and the Multispecies Coalescent.
Molecular Biology and Evolution
, 35
(10)
pp. 2585-2593.
10.1093/molbev/msy147.
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Ford, A;
Bullen, TR;
Pang, L;
Genner, MJ;
Bills, R;
Flouri, T;
Ngatunga, BP;
... Day, JJ; + view all
(2019)
Molecular phylogeny of Oreochromis (Cichlidae: Oreochromini) reveals mito-nuclear discordance and multiple colonisation of adverse aquatic environments.
Molecular Phylogenetics and Evolution
, 136
pp. 215-226.
10.1016/j.ympev.2019.04.008.
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Hoang, DT;
Vinh, LS;
Flouri, T;
Stamatakis, A;
von Haeseler, A;
Minh, BQ;
(2018)
MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation.
BMC Evolutionary Biology
, 18
(1)
, Article 11. 10.1186/s12862-018-1131-3.
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Huang, J;
Flouris, T;
Yang, Z;
(2020)
A simulation study to examine the information content in phylogenomic datasets under the multispecies coalescent model.
Molecular Biology and Evolution
, 37
(11)
pp. 3211-3224.
10.1093/molbev/msaa166.
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Jiao, X;
Thomas, F;
Rannala, B;
Yang, Z;
(2020)
The Impact of Cross-Species Gene Flow on Species Tree Estimation.
Systematic Biology
, 69
(5)
pp. 830-847.
10.1093/sysbio/syaa001.
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Kapli, P;
Lutteropp, S;
Zhang, J;
Kobert, K;
Pavlidis, P;
Stamatakis, A;
Flouri, T;
(2017)
Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo.
Bioinformatics
, 33
(11)
pp. 1630-1638.
10.1093/bioinformatics/btx025.
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Kobert, K;
Stamatakis, A;
Flouri, T;
(2017)
Efficient Detection of Repeating Sites to Accelerate Phylogenetic Likelihood Calculations.
Systematic Biology
, 66
(2)
pp. 205-217.
10.1093/sysbio/syw075.
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Kozlov, AM;
Darriba, D;
Flouri, T;
Morel, B;
Stamatakis, A;
(2019)
RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference.
Bioinformatics
, 35
(21)
pp. 4453-4455.
10.1093/bioinformatics/btz305.
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Miralles, Aurelien;
Ducasse, Jacques;
Brouillet, Sophie;
Flouri, Tomas;
Fujisawa, Tomochika;
Kapli, Paschalia;
Knowles, L Lacey;
... Puillandre, Nicolas; + view all
(2022)
SPART: A versatile and standardized data exchange format for species partition information.
Molecular Ecology Resources
, 22
(1)
pp. 430-438.
10.1111/1755-0998.13470.
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Thawornwattana, Yuttapong;
Huang, Jun;
Flouri, Tomá Š;
Mallet, James;
Yang, Ziheng;
(2023)
Inferring the Direction of Introgression Using Genomic Sequence Data.
Molecular Biology and Evolution
, 40
(8)
, Article msad178. 10.1093/molbev/msad178.
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Yang, Z;
Flouris, T;
Jiao, X;
Rannala, B;
(2020)
A Bayesian implementation of the multispecies coalescent model with introgression for phylogenomic analysis.
Molecular Biology and Evolution
, 37
(4)
pp. 1211-1223.
10.1093/molbev/msz296.
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