Browse by UCL people
Group by: Type | Date
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Number of items: 16.
Article
Chen, Y;
Farrer, RA;
Giamberardino, C;
Sakthikumar, S;
Jones, A;
Yang, T;
Tenor, JL;
... Perfect, JR; + view all
(2017)
Microevolution of Serial Clinical Isolates of Cryptococcus neoformans var. grubii and C. gattii.
mBio
, 8
(2)
, Article e00166-17. 10.1128/mBio.00166-17.
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Ene, IV;
Farrer, RA;
Hirakawa, MP;
Agwamba, K;
Cuomo, CA;
Bennett, RJ;
(2018)
Global analysis of mutations driving microevolution of a heterozygous diploid fungal pathogen.
Proceedings of the National Academy of Sciences of the United States of America
, 115
(37)
E8688-E8697.
10.1073/pnas.1806002115.
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Farrer, RA;
(2017)
Synima: a Synteny imaging tool for annotated genome assemblies.
BMC Bioinformatics
, 18
, Article 507. 10.1186/s12859-017-1939-7.
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Farrer, RA;
Ford, CB;
Rhodes, J;
Delorey, T;
May, RC;
Fisher, MC;
Cloutman-Green, E;
... Cuomo, CA; + view all
(2018)
Transcriptional Heterogeneity of Cryptococcus gattii VGII Compared with Non-VGII Lineages Underpins Key Pathogenicity Pathways.
mSphere
, 3
(5)
, Article e00445-18. 10.1128/mSphere.00445-18.
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Farrer, RA;
Henk, DA;
Fisher, MC;
Garner, TWJ;
Balloux, F;
Woodhams, DC;
(2013)
Chromosomal Copy Number Variation, Selection and Uneven Rates of Recombination Reveal Cryptic Genome Diversity Linked to Pathogenicity.
PLoS Genetics
, 9
(8)
, Article e1003703. 10.1371/journal.pgen.1003703.
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Farrer, RA;
Martel, A;
Verbrugghe, E;
Abouelleil, A;
Ducatelle, R;
Longcore, JE;
James, TY;
... Cuomo, CA; + view all
(2017)
Genomic innovations linked to infection strategies across emerging pathogenic chytrid fungi.
Nature Communications
, 8
, Article 14742. 10.1038/ncomms14742.
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Farrer, RA;
Voelz, K;
Henk, DA;
Johnston, SA;
Fisher, MC;
May, RC;
Cuomo, CA;
(2016)
Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus Cryptococcus gattii.
Philosophical Transactions of the Royal Society B: Biological Sciences
, 371
(1709)
, Article 20160021. 10.1098/rstb.2016.0021.
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Farret, RA;
Desjardins, CA;
Sakthikumar, S;
Gujja, S;
Saif, S;
Zeng, Q;
Chen, Y;
... Cuomo, CA; + view all
(2015)
Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii.
MBIO
, 6
(5)
, Article e00868-15. 10.1128/mBio.00868-15.
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Fisher, M;
Ghosh, P;
Shelton, J;
Bates, K;
Brookes, L;
Wierzbicki, C;
Rosa, G;
... Garner, TWJ; + view all
(2018)
Development and worldwide use of non-lethal, and minimal population-level impact, protocols for the isolation of amphibian chytrid fungi.
Scientific Reports
, 8
, Article 7772. 10.1038/s41598-018-24472-2.
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Issi, L;
Farrer, RA;
Pastor, K;
Landry, B;
Delorey, T;
Bell, GW;
Thompson, DA;
... Rao, RP; + view all
(2017)
Zinc Cluster Transcription Factors Alter Virulence in Candida albicans.
Genetics
, 205
(2)
pp. 559-576.
10.1534/genetics.116.195024.
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Leach, MD;
Farrer, RA;
Tan, K;
Miao, Z;
Walker, LA;
Cuomo, CA;
Wheeler, RT;
... Cowen, LE; + view all
(2016)
Hsf1 and Hsp90 orchestrate temperature-dependent global transcriptional remodelling and chromatin architecture in Candida albicans.
Nature Communications
, 7
, Article 11704. 10.1038/ncomms11704.
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Muñoz, JF;
Farrer, RA;
Desjardins, CA;
Gallo, JE;
Sykes, S;
Sakthikumar, S;
Misas, E;
... Cuomo, CA; + view all
(2016)
Genome Diversity, Recombination, and Virulence across the Major Lineages of Paracoccidioides.
mSphere
, 1
(5)
e00213-e00216.
10.1128/mSphere.00213-16.
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O'Hanlon, SJ;
Rieux, A;
Farrer, RA;
Rosa, GM;
Waldman, B;
Bataille, A;
Kosch, TA;
... Fisher, MC; + view all
(2018)
Recent Asian origin of chytrid fungi causing global amphibian declines.
Science
, 360
(6389)
pp. 621-627.
10.1126/science.aar1965.
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Rhodes, J;
Abdolrasouli, A;
Farrer, RA;
Cuomo, CA;
Aanensen, DM;
Armstrong-James, D;
Fisher, MC;
(2018)
Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris article.
Emerging Microbes and Infections
, 7
(1)
, Article 43. 10.1038/s41426-018-0045-x.
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van Dorp, L;
Wang, Q;
Shaw, LP;
Acman, M;
Brynildsrud, OB;
Eldholm, V;
Wang, R;
... Wang, H; + view all
(2019)
Rapid phenotypic evolution in multidrug-resistant Klebsiella pneumoniae hospital outbreak strains.
Microbial Genomics
10.1099/mgen.0.000263.
(In press).
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Working / discussion paper
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Munoz, J;
Gade, L;
Chow, N;
Loparev, V;
Juieng, P;
Farrer, R;
Litvintseva, A;
(2018)
Genomic basis of multidrug-resistance, mating, and virulence in Candida auris and related emerging species.
BioRxiv
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