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Phylogeny and systematic history of early salamanders

Pearson, MR; (2016) Phylogeny and systematic history of early salamanders. Doctoral thesis , UCL (University College London). Green open access

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Abstract

Prevalent paedomorphy and convergence in salamander morphology has made it difficult to resolve relationships using purely morphological characters. However, many new fully articulated fossil salamanders have emerged, especially from China, and it is important to be able to place them within a phylogenetic framework to better understand the origin and radiation patterns of early salamanders. This study looks at the phylogeny of extant taxa using both molecular and morphological datasets. In deciphering the phylogeny of modern day taxa the limitations and caveats of the data were explored. The extent of the influence homoplasy and convergence have on the phylogenetic topology has been assessed using methods designed to identify and/or down-weight homoplasy in morphological characters. Once characters had been identified as potentially homoplasious and removed from the dataset, further analyses were performed on reduced datasets. Fossils were simulated by creating subsets of characters (those commonly found in the fossil record) for extant taxa. Analyses using parsimony and Bayesian inference were performed to test the robustness of the placements of these simulated fossils. The impact of missing data caused by poor preservation and incomplete specimens was tested by simulating reduced/limited character scores for living taxa, and then comparing the phylogenetic placement of these artificially degraded taxa with their ‘true’ position based on complete data. This paves the way for the inclusion of the fossils. While this study has not resolved the relationships between salamander families it has allowed a deeper understanding of the data, and assesses the confidence with which the placement of key fossils can be made in a new way. This novel method has further implications for the fitting of fossils within a phylogenetic framework in other problem clades. Biogeographic hypotheses can then be tested.

Type: Thesis (Doctoral)
Title: Phylogeny and systematic history of early salamanders
Event: UCL (University College London)
Open access status: An open access version is available from UCL Discovery
Language: English
Keywords: Phylogeny, fossil, Salamander
UCL classification: UCL > Provost and Vice Provost Offices
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Life Sciences
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Life Sciences > Div of Biosciences
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Life Sciences > Div of Biosciences > Cell and Developmental Biology
UCL > Provost and Vice Provost Offices > UCL BEAMS
UCL > Provost and Vice Provost Offices > UCL BEAMS > Faculty of Maths and Physical Sciences
UCL > Provost and Vice Provost Offices > UCL BEAMS > Faculty of Maths and Physical Sciences > Dept of Earth Sciences
URI: https://discovery.ucl.ac.uk/id/eprint/1507772
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