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Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)

Martin, ACR; (2014) Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV). F1000Research , 3 (249) 10.12688/f1000research.5486.1. Green open access

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Abstract

The JavaScript Sequence Alignment Viewer (JSAV) is designed as a simple-to-use JavaScript component for displaying sequence alignments on web pages. The display of sequences is highly configurable with options to allow alternative coloring schemes, sorting of sequences and ’dotifying’ repeated amino acids. An option is also available to submit selected sequences to another web site, or to other JavaScript code. JSAV is implemented purely in JavaScript making use of the JQuery and JQuery-UI libraries. It does not use any HTML5-specific options to help with browser compatibility. The code is documented using JSDOC and is available from http://www.bioinf.org.uk/software/jsav/.

Type: Article
Title: Viewing multiple sequence alignments with the JavaScript Sequence Alignment Viewer (JSAV)
Open access status: An open access version is available from UCL Discovery
DOI: 10.12688/f1000research.5486.1
Publisher version: http://dx.doi.org/10.12688/f1000research.5486.1
Language: English
Additional information: © 2014 Martin ACR. This is an open access article distributed under the terms of the Creative Commons Attribution Licence http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Data associated with the article are available under the terms of the Creative Commons Zero "No rights reserved" data waiver (CC0 1.0 Public domain dedication). http://creativecommons.org/publicdomain/zero/1.0/
UCL classification: UCL
UCL > Provost and Vice Provost Offices
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Life Sciences
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Life Sciences > Div of Biosciences
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Life Sciences > Div of Biosciences > Structural and Molecular Biology
URI: https://discovery.ucl.ac.uk/id/eprint/1470187
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