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A gene regulatory network model for control

Krohn, JP; (2013) A gene regulatory network model for control. Doctoral thesis , UCL (University College London). Green open access

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Abstract

The activity of a biological cell is regulated by interactions between genes and proteins. In artificial intelligence, this has led to the creation of developmental gene regulatory network (GRN) models which aim to exploit these mechanisms to algorithmically build complex designs. The emerging field of GRNs for control aims to instead exploit these natural mechanisms and this ability to encode a large variety of behaviours within a single evolvable genetic program for the solution of control problems. This work aims to extend the application domain of GRN models to previously unsolved control problems; the focus will here be on reinforcement learning problems, in which the dynamics of the system controlled are kept from the controller and only sparse feedback is given to it. This category of problems closely matches the challenges faced by natural evolution in generating biological GRNs. Starting with an existing GRN model, the fractal GRN (FGRN) model, a successful application to a standard control problem will be presented, followed by multiple improvements to the FGRN model and its associated genetic algorithm, resulting in better performances in terms of both reliability and speed. Limitations will be identified in the FGRN model, leading to the introduction of the Input-Merge- Regulate-Output (IMRO) architecture for GRN models, an implementation of which will show both quantitative and qualitative improvements over the FGRN model, solving harder control problems. The resulting model also displays useful features which should facilitate further extension and real-world use of the system.

Type: Thesis (Doctoral)
Title: A gene regulatory network model for control
Open access status: An open access version is available from UCL Discovery
Language: English
UCL classification: UCL > Provost and Vice Provost Offices
UCL > Provost and Vice Provost Offices > UCL BEAMS
UCL > Provost and Vice Provost Offices > UCL BEAMS > Faculty of Engineering Science
UCL > Provost and Vice Provost Offices > UCL BEAMS > Faculty of Engineering Science > Dept of Computer Science
URI: https://discovery.ucl.ac.uk/id/eprint/1416287
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