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Sculpting DNA-based synthetic cells through phase separation and phase-targeted activity

Malouf, Layla; Tanase, Diana A; Fabrini, Giacomo; Brady, Ryan A; Paez-Perez, Miguel; Leathers, Adrian; Booth, Michael J; (2023) Sculpting DNA-based synthetic cells through phase separation and phase-targeted activity. Chem , 9 (11) pp. 3347-3364. 10.1016/j.chempr.2023.10.004. Green open access

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Abstract

Synthetic cells, like their biological counterparts, require internal compartments with distinct chemical and physical properties where different functionalities can be localized. Inspired by membrane-less compartmentalization in biological cells, here, we demonstrate how microphase separation can be used to engineer heterogeneous cell-like architectures with programmable morphology and compartment-targeted activity. The synthetic cells self-assemble from amphiphilic DNA nanostructures, producing core-shell condensates due to size-induced de-mixing. Lipid deposition and phase-selective etching are then used to generate a porous pseudo-membrane, a cytoplasm analog, and membrane-less organelles. The synthetic cells can sustain RNA synthesis via in vitro transcription, leading to cytoplasm and pseudo-membrane expansion caused by an accumulation of the transcript. Our approach exemplifies how architectural and functional complexity can emerge from a limited number of distinct building blocks, if molecular-scale programmability, emergent biophysical phenomena, and biochemical activity are coupled to mimic those observed in live cells.

Type: Article
Title: Sculpting DNA-based synthetic cells through phase separation and phase-targeted activity
Open access status: An open access version is available from UCL Discovery
DOI: 10.1016/j.chempr.2023.10.004
Publisher version: https://doi.org/10.1016/j.chempr.2023.10.004
Language: English
Additional information: © 2023 The Author(s). Published by Elsevier Inc. This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
Keywords: Synthetic cells, DNA nanotechnology, bottom-up synthetic biology, biomimetics, membrane-less organelles, phase separation, liquid-liquid phase separation, condensates, self-assembly
UCL classification: UCL
UCL > Provost and Vice Provost Offices > UCL BEAMS
UCL > Provost and Vice Provost Offices > UCL BEAMS > Faculty of Maths and Physical Sciences
UCL > Provost and Vice Provost Offices > UCL BEAMS > Faculty of Maths and Physical Sciences > Dept of Chemistry
URI: https://discovery.ucl.ac.uk/id/eprint/10181415
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