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Machine learning methods for predicting protein structure from single sequences

Kandathil, Shaun M; Lau, Andy M; Jones, David T; (2023) Machine learning methods for predicting protein structure from single sequences. Current Opinion in Structural Biology , 81 , Article 102627. 10.1016/j.sbi.2023.102627. Green open access

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Abstract

Recent breakthroughs in protein structure prediction have increasingly relied on the use of deep neural networks. These recent methods are notable in that they produce 3-D atomic coordinates as a direct output of the networks, a feature which presents many advantages. Although most techniques of this type make use of multiple sequence alignments as their primary input, a new wave of methods have attempted to use just single sequences as the input. We discuss the make-up and operating principles of these models, and highlight new developments in these areas, as well as areas for future development.

Type: Article
Title: Machine learning methods for predicting protein structure from single sequences
Location: England
Open access status: An open access version is available from UCL Discovery
DOI: 10.1016/j.sbi.2023.102627
Publisher version: https://doi.org/10.1016/j.sbi.2023.102627
Language: English
Additional information: © 2023 The Authors. Published by Elsevier Ltd. This is an open access article under the CC BY license (http://creativecommons. org/licenses/by/4.0/).
UCL classification: UCL
UCL > Provost and Vice Provost Offices > UCL BEAMS
UCL > Provost and Vice Provost Offices > UCL BEAMS > Faculty of Engineering Science
UCL > Provost and Vice Provost Offices > UCL BEAMS > Faculty of Engineering Science > Dept of Computer Science
URI: https://discovery.ucl.ac.uk/id/eprint/10172239
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