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CRISPR mediated base conversion allows discriminatory depletion of endogenous T cell receptors for enhanced synthetic immunity

Preece, R; Pavesi, A; Gkazi, SA; Stegmann, KA; Georgiadis, C; Tan, ZM; Joey Aw, JY; ... Qasim, W; + view all (2020) CRISPR mediated base conversion allows discriminatory depletion of endogenous T cell receptors for enhanced synthetic immunity. Molecular Therapy: Methods & Clinical Development 10.1016/j.omtm.2020.09.002. (In press). Green open access

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Abstract

Emerging base editing technology exploits CRISPR RNA-guided DNA modification effects for highly specific C>T conversion which has been used to efficiently disrupt gene expression. These tools can enhance synthetic T cell immunity by restricting specificity, addressing HLA barriers and promoting persistence. We report lentiviral delivery of a Hepatitis B virus (HBV) specific recombinant TCR (rTCR) and a linked CRISPR single-guide RNA for simultaneous disruption of endogenous TCRs (eTCR) when combined with transient cytosine deamination. Discriminatory depletion of eTCR and coupled expression of rTCR resulted in enrichment of HBV specific populations from 55% (SEM ± 2.4%) to 95% (SEM ± 0.5%). Intensity of rTCR expression increased 1.8-2.9 fold compared to cells retaining their competing eTCR and increased cytokine production and killing of HBV antigen-expressing hepatoma cells in a 3D microfluidic model was exhibited. Molecular signatures confirmed seamless conversion of C>T (G>A) had created a premature stop codon in TCR beta constant 1/2 loci, with no notable activity at predicted off-target sites. Thus, targeted disruption of eTCR by cytosine deamination and discriminatory enrichment of antigen-specific T cells offers the prospect of enhanced, more specific T cell therapies against HBV associated hepatocellular carcinoma (HCC) as well as other viral and tumour antigens.

Type: Article
Title: CRISPR mediated base conversion allows discriminatory depletion of endogenous T cell receptors for enhanced synthetic immunity
Open access status: An open access version is available from UCL Discovery
DOI: 10.1016/j.omtm.2020.09.002
Publisher version: https://doi.org/10.1016/j.omtm.2020.09.002
Language: English
Additional information: This is an Open Access article published under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) Licence (https://creativecommons.org/licenses/by-nc-nd/4.0/).
UCL classification: UCL
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Medical Sciences
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Medical Sciences > Div of Infection and Immunity
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Population Health Sciences > UCL GOS Institute of Child Health
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Population Health Sciences > UCL GOS Institute of Child Health > Infection, Immunity and Inflammation Dept
URI: https://discovery.ucl.ac.uk/id/eprint/10110688
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