eprintid: 1453932
rev_number: 43
eprint_status: archive
userid: 608
dir: disk0/01/45/39/32
datestamp: 2014-11-03 22:06:27
lastmod: 2021-09-19 23:26:46
status_changed: 2014-11-03 22:06:27
type: article
metadata_visibility: show
item_issues_count: 0
creators_name: Lewis, TE
creators_name: Sillitoe, I
creators_name: Andreeva, A
creators_name: Blundell, TL
creators_name: Buchan, DW
creators_name: Chothia, C
creators_name: Cozzetto, D
creators_name: Dana, JM
creators_name: Filippis, I
creators_name: Gough, J
creators_name: Jones, DT
creators_name: Kelley, LA
creators_name: Kleywegt, GJ
creators_name: Minneci, F
creators_name: Mistry, J
creators_name: Murzin, AG
creators_name: Ochoa-Montaño, B
creators_name: Oates, ME
creators_name: Punta, M
creators_name: Rackham, OJ
creators_name: Stahlhacke, J
creators_name: Sternberg, MJ
creators_name: Velankar, S
creators_name: Orengo, C
title: Genome3D: exploiting structure to help users understand their sequences
ispublished: pub
divisions: UCL
divisions: B02
divisions: C08
divisions: D09
divisions: G03
divisions: B04
divisions: C05
divisions: F48
note: © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

abstract: Genome3D (http://www.genome3d.eu) is a collaborative resource that provides predicted domain annotations and structural models for key sequences. Since introducing Genome3D in a previous NAR paper, we have substantially extended and improved the resource. We have annotated representatives from Pfam families to improve coverage of diverse sequences and added a fast sequence search to the website to allow users to find Genome3D-annotated sequences similar to their own. We have improved and extended the Genome3D data, enlarging the source data set from three model organisms to 10, and adding VIVACE, a resource new to Genome3D. We have analysed and updated Genome3D's SCOP/CATH mapping. Finally, we have improved the superposition tools, which now give users a more powerful interface for investigating similarities and differences between structural models.
date: 2014-10-27
official_url: http://dx.doi.org/10.1093/nar/gku973
vfaculties: VFLS
vfaculties: VENG
oa_status: green
full_text_type: pub
language: eng
primo: open
primo_central: open_green
article_type_text: JOURNAL ARTICLE
verified: verified_manual
elements_source: PubMed
elements_id: 989597
doi: 10.1093/nar/gku973
pii: gku973
language_elements: ENG
lyricists_name: Buchan, Daniel
lyricists_name: Cozzetto, Domenico
lyricists_name: Jones, David
lyricists_name: Minneci, Federico
lyricists_name: Orengo, Christine
lyricists_name: Sillitoe, Ian
lyricists_id: DWABU05
lyricists_id: DCOZZ96
lyricists_id: DTJON81
lyricists_id: FMINN73
lyricists_id: CAORE63
lyricists_id: ISILL22
full_text_status: public
publication: Nucleic Acids Research
volume: 43
number: D1
pagerange: D382-D386
issn: 0305-1048
citation:        Lewis, TE;    Sillitoe, I;    Andreeva, A;    Blundell, TL;    Buchan, DW;    Chothia, C;    Cozzetto, D;                                                                     ... Orengo, C; + view all <#>        Lewis, TE;  Sillitoe, I;  Andreeva, A;  Blundell, TL;  Buchan, DW;  Chothia, C;  Cozzetto, D;  Dana, JM;  Filippis, I;  Gough, J;  Jones, DT;  Kelley, LA;  Kleywegt, GJ;  Minneci, F;  Mistry, J;  Murzin, AG;  Ochoa-Montaño, B;  Oates, ME;  Punta, M;  Rackham, OJ;  Stahlhacke, J;  Sternberg, MJ;  Velankar, S;  Orengo, C;   - view fewer <#>    (2014)    Genome3D: exploiting structure to help users understand their sequences.                   Nucleic Acids Research , 43  (D1)   D382-D386.    10.1093/nar/gku973 <https://doi.org/10.1093/nar%2Fgku973>.       Green open access   
 
document_url: https://discovery.ucl.ac.uk/id/eprint/1453932/1/Nucl._Acids_Res.-2015-Lewis-D382-6.pdf