eprintid: 1453932 rev_number: 43 eprint_status: archive userid: 608 dir: disk0/01/45/39/32 datestamp: 2014-11-03 22:06:27 lastmod: 2021-09-19 23:26:46 status_changed: 2014-11-03 22:06:27 type: article metadata_visibility: show item_issues_count: 0 creators_name: Lewis, TE creators_name: Sillitoe, I creators_name: Andreeva, A creators_name: Blundell, TL creators_name: Buchan, DW creators_name: Chothia, C creators_name: Cozzetto, D creators_name: Dana, JM creators_name: Filippis, I creators_name: Gough, J creators_name: Jones, DT creators_name: Kelley, LA creators_name: Kleywegt, GJ creators_name: Minneci, F creators_name: Mistry, J creators_name: Murzin, AG creators_name: Ochoa-Montaño, B creators_name: Oates, ME creators_name: Punta, M creators_name: Rackham, OJ creators_name: Stahlhacke, J creators_name: Sternberg, MJ creators_name: Velankar, S creators_name: Orengo, C title: Genome3D: exploiting structure to help users understand their sequences ispublished: pub divisions: UCL divisions: B02 divisions: C08 divisions: D09 divisions: G03 divisions: B04 divisions: C05 divisions: F48 note: © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. abstract: Genome3D (http://www.genome3d.eu) is a collaborative resource that provides predicted domain annotations and structural models for key sequences. Since introducing Genome3D in a previous NAR paper, we have substantially extended and improved the resource. We have annotated representatives from Pfam families to improve coverage of diverse sequences and added a fast sequence search to the website to allow users to find Genome3D-annotated sequences similar to their own. We have improved and extended the Genome3D data, enlarging the source data set from three model organisms to 10, and adding VIVACE, a resource new to Genome3D. We have analysed and updated Genome3D's SCOP/CATH mapping. Finally, we have improved the superposition tools, which now give users a more powerful interface for investigating similarities and differences between structural models. date: 2014-10-27 official_url: http://dx.doi.org/10.1093/nar/gku973 vfaculties: VFLS vfaculties: VENG oa_status: green full_text_type: pub language: eng primo: open primo_central: open_green article_type_text: JOURNAL ARTICLE verified: verified_manual elements_source: PubMed elements_id: 989597 doi: 10.1093/nar/gku973 pii: gku973 language_elements: ENG lyricists_name: Buchan, Daniel lyricists_name: Cozzetto, Domenico lyricists_name: Jones, David lyricists_name: Minneci, Federico lyricists_name: Orengo, Christine lyricists_name: Sillitoe, Ian lyricists_id: DWABU05 lyricists_id: DCOZZ96 lyricists_id: DTJON81 lyricists_id: FMINN73 lyricists_id: CAORE63 lyricists_id: ISILL22 full_text_status: public publication: Nucleic Acids Research volume: 43 number: D1 pagerange: D382-D386 issn: 0305-1048 citation: Lewis, TE; Sillitoe, I; Andreeva, A; Blundell, TL; Buchan, DW; Chothia, C; Cozzetto, D; ... Orengo, C; + view all <#> Lewis, TE; Sillitoe, I; Andreeva, A; Blundell, TL; Buchan, DW; Chothia, C; Cozzetto, D; Dana, JM; Filippis, I; Gough, J; Jones, DT; Kelley, LA; Kleywegt, GJ; Minneci, F; Mistry, J; Murzin, AG; Ochoa-Montaño, B; Oates, ME; Punta, M; Rackham, OJ; Stahlhacke, J; Sternberg, MJ; Velankar, S; Orengo, C; - view fewer <#> (2014) Genome3D: exploiting structure to help users understand their sequences. Nucleic Acids Research , 43 (D1) D382-D386. 10.1093/nar/gku973 <https://doi.org/10.1093/nar%2Fgku973>. Green open access document_url: https://discovery.ucl.ac.uk/id/eprint/1453932/1/Nucl._Acids_Res.-2015-Lewis-D382-6.pdf