eprintid: 10199741
rev_number: 6
eprint_status: archive
userid: 699
dir: disk0/10/19/97/41
datestamp: 2024-11-07 14:30:37
lastmod: 2024-11-07 14:30:37
status_changed: 2024-11-07 14:30:37
type: article
metadata_visibility: show
sword_depositor: 699
creators_name: Buchan, Daniel WA
creators_name: Moffat, Lewis
creators_name: Lau, Andy
creators_name: Kandathil, Shaun M
creators_name: Jones, David T
title: Deep learning for the PSIPRED Protein Analysis Workbench
ispublished: pub
divisions: UCL
divisions: B04
divisions: F48
keywords: Science & Technology, Life Sciences & Biomedicine, Biochemistry & Molecular Biology, PREDICTION, ACCURACY
note: © The Author(s) 2024. Published by Oxford University Press on behalf of Nucleic Acids Research.
This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
abstract: The PSIRED Workbench is a long established and popular bioinformatics web service offering a wide range of machine learning based analyses for characterizing protein structure and function. In this paper we provide an update of the recent additions and developments to the webserver, with a focus on new Deep Learning based methods. We briefly discuss some trends in server usage since the publication of AlphaFold2 and we give an overview of some upcoming developments for the service. The PSIPRED Workbench is available at http://bioinf.cs.ucl.ac.uk/psipred.
date: 2024-07-05
date_type: published
publisher: OXFORD UNIV PRESS
official_url: http://dx.doi.org/10.1093/nar/gkae328
oa_status: green
full_text_type: pub
language: eng
primo: open
primo_central: open_green
verified: verified_manual
elements_id: 2276121
doi: 10.1093/nar/gkae328
medium: Print
pii: 7673487
lyricists_name: Kandathil, Shaun
lyricists_name: Buchan, Daniel
lyricists_name: Jones, David
lyricists_id: SMKAN15
lyricists_id: DWABU05
lyricists_id: DTJON81
actors_name: Jones, David
actors_id: DTJON81
actors_role: owner
funding_acknowledgements: BB/T019379/1 [UK's Biotechnology and Biological Sciences Research Council under BBSRC]; [UCL]
full_text_status: public
publication: Nucleic Acids Research
volume: 52
number: W1
pagerange: W287-W293
pages: 7
event_location: England
issn: 0305-1048
citation:        Buchan, Daniel WA;    Moffat, Lewis;    Lau, Andy;    Kandathil, Shaun M;    Jones, David T;      (2024)    Deep learning for the PSIPRED Protein Analysis Workbench.                   Nucleic Acids Research , 52  (W1)   W287-W293.    10.1093/nar/gkae328 <https://doi.org/10.1093/nar%2Fgkae328>.       Green open access   
 
document_url: https://discovery.ucl.ac.uk/id/eprint/10199741/1/Deep%20learning%20for%20the%20PSIPRED%20Protein%20Analysis%20Workbench.pdf