eprintid: 10115261
rev_number: 22
eprint_status: archive
userid: 608
dir: disk0/10/11/52/61
datestamp: 2020-11-19 11:49:48
lastmod: 2022-01-04 17:51:53
status_changed: 2020-11-19 11:49:48
type: article
metadata_visibility: show
creators_name: Gong, T
creators_name: Tong, Q
creators_name: Li, Z
creators_name: He, H
creators_name: Zhang, H
creators_name: Zhong, J
title: Deep learning‐based method for reducing residual motion effects in diffusion parameter estimation
ispublished: pub
divisions: UCL
divisions: B04
divisions: C05
divisions: F48
keywords: diffusion kurtosis imaging, diffusion tensor imaging, head motion, neural network
note: This version is the author accepted manuscript. For information on re-use, please refer to the publisher’s terms and conditions.
abstract: PURPOSE: Conventional motion-correction techniques for diffusion MRI can introduce motion-level-dependent bias in derived metrics. To address this challenge, a deep learning-based technique was developed to minimize such residual motion effects. METHODS: The data-rejection approach was adopted in which motion-corrupted data are discarded before model-fitting. A deep learning-based parameter estimation algorithm, using a hierarchical convolutional neural network (H-CNN), was combined with motion assessment and corrupted volume rejection. The method was designed to overcome the limitations of existing methods of this kind that produce parameter estimations whose quality depends strongly on a proportion of the data discarded. Evaluation experiments were conducted for the estimation of diffusion kurtosis and diffusion-tensor-derived measures at both the individual and group levels. The performance was compared with the robust approach of iteratively reweighted linear least squares (IRLLS) after motion correction with and without outlier replacement. RESULTS: Compared with IRLLS, the H-CNN-based technique is minimally sensitive to motion effects. It was tested at severe motion levels when 70% to 90% of the data are rejected and when random motion is present. The technique had a stable performance independent of the numbers and schemes of data rejection. A further test on a data set from children with attention-deficit hyperactivity disorder shows the technique can potentially ameliorate spurious group-level difference caused by head motion. CONCLUSION: This method shows great potential for reducing residual motion effects in motion-corrupted diffusion-weighted-imaging data, bringing benefits that include reduced bias in derived metrics in individual scans and reduced motion-level-dependent bias in population studies employing diffusion MRI.
date: 2021-04
date_type: published
official_url: https://doi.org/10.1002/mrm.28544
oa_status: green
full_text_type: other
language: eng
primo: open
primo_central: open_green
verified: verified_manual
elements_id: 1823958
doi: 10.1002/mrm.28544
lyricists_name: Gong, Ting
lyricists_name: Zhang, Hui
lyricists_id: TGONG58
lyricists_id: HZHAN50
actors_name: Gong, Ting
actors_id: TGONG58
actors_role: owner
full_text_status: public
publication: Magnetic Resonance in Medicine
volume: 85
number: 4
pagerange: 2278-2293
event_location: United States
citation:        Gong, T;    Tong, Q;    Li, Z;    He, H;    Zhang, H;    Zhong, J;      (2021)    Deep learning‐based method for reducing residual motion effects in diffusion parameter estimation.                   Magnetic Resonance in Medicine , 85  (4)   pp. 2278-2293.    10.1002/mrm.28544 <https://doi.org/10.1002/mrm.28544>.       Green open access   
 
document_url: https://discovery.ucl.ac.uk/id/eprint/10115261/3/Gong_Main-MRM-20-21048-clean.pdf