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High-Fidelity Meshes from Tissue Samples for Diffusion MRI Simulations

Panagiotaki, E; Hall, MG; Zhang, H; Siow, B; Lythgoe, MF; Alexander, DC; (2010) High-Fidelity Meshes from Tissue Samples for Diffusion MRI Simulations. In: Jiang, T and Navab, N and Pluim, JPW and Viergever, MA, (eds.) MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2010, PT II,. (pp. 404 - 411). SPRINGER-VERLAG BERLIN

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Abstract

This paper presents a method for constructing detailed geometric models of tissue microstructure for synthesizing realistic diffusion MRI data. We construct three-dimensional mesh models from confocal microscopy image stacks using the marching cubes algorithm. Random-walk simulations within the resulting meshes provide synthetic diffusion MRI measurements. Experiments optimise simulation parameters and complexity of the meshes to achieve accuracy and reproducibility while minimizing computation time. Finally we assess the quality of the synthesized data from the mesh models by comparison with scanner data as well as synthetic data from simple geometric models and simplified meshes that vary only in two dimensions. The results support the extra complexity of the three-dimensional mesh compared to simpler models although sensitivity to the mesh resolution is quite robust.

Type:Proceedings paper
Title:High-Fidelity Meshes from Tissue Samples for Diffusion MRI Simulations
Event:13th International Conference on Medical Image Computing and Computer-Assisted Intervention
Location:China Natl Convent Ctr, Beijing, PEOPLES R CHINA
Dates:2010-09-20 - 2010-09-24
ISBN-13:978-3-642-15744-8
DOI:10.1007/978-3-642-15745-5_50
Publisher version:http://dx.doi.org/10.1007/978-3-642-15745-5_50
Keywords:RESTRICTED DIFFUSION, BRAIN, MODEL
UCL classification:UCL > School of Life and Medical Sciences > Faculty of Medical Sciences > Medicine (Division of) > Metabolism and Experimental Therapeutics
UCL > School of BEAMS > Faculty of Engineering Science > Computer Science
UCL > School of BEAMS > Faculty of Engineering Science > Medical Physics and Bioengineering

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