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Protein annotation and modelling servers at University College London

Buchan, DWA; Ward, SM; Lobley, AE; Nugent, TCO; Bryson, K; Jones, DT; (2010) Protein annotation and modelling servers at University College London. NUCLEIC ACIDS RES , 38 W563 - W568. 10.1093/nar/gkq427. Gold open access

Abstract

The UCL Bioinformatics Group web portal offers several high quality protein structure prediction and function annotation algorithms including PSIPRED, pGenTHREADER, pDomTHREADER, MEMSAT, MetSite, DISOPRED2, DomPred and FFPred for the prediction of secondary structure, protein fold, protein structural domain, transmembrane helix topology, metal binding sites, regions of protein disorder, protein domain boundaries and protein function, respectively. We also now offer a fully automated 3D modelling pipeline: BioSerf, which performed well in CASP8 and uses a fragment-assembly approach which placed it in the top five servers in the de novo modelling category. The servers are available via the group web site at http://bioinf.cs.ucl.ac.uk/.

Type:Article
Title:Protein annotation and modelling servers at University College London
Open access status:An open access publication
DOI:10.1093/nar/gkq427
Keywords:PREDICTION, DATABASE
UCL classification:UCL > School of BEAMS > Faculty of Engineering Science > Computer Science

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