Smaers, JB and Vinicius, L (2009) Inferring macro-evolutionary patterns using an adaptive peak model of evolution. EVOL ECOL RES , 11 (7) 991 - 1015.
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Background: Currently available methods of ancestral reconstruction are built either oil Brownian Motion (BM) or Ornstein-Uhlenbeck (OU) models of evolution. Results from these methods sometimes do not a-arce with the fossil recordAim: Develop a new method. the method of Independent Evolution (IE), built on an adaptive peak model of evolutionKey assumptions: In evolution. population phenotypes are affected by the wandering adaptive peaks of adaptive surfaces. Branch-specific rates of evolution depend on weighted. relative distances between an ancestral adaptive peak and a new adaptive surface that descendant populations attempt to climbMethods: We defined an eight-step algorithm to incorporate the assumptions, and then applied it recursively for each node in the tree to produce the phylogenetic histories. We performed two studies: a simulation study of directional selection on particular branches in a model primate phylogeny, and a case study of primate brain and body size in which we reconstructed the ancestral states of primate brain sizes and body sizes and compared them with 28 fossil data points In each study. we used strong inference - that is. we employed six different methods of ancestral reconstruction to determine how well each succeeds. Four of the methods of ancestral reconstruction are based on BM, one oil the OU, and one is IE.Results: The method based oil an adaptive peak model of evolution (IE) significantly outperformed both BM-based and OU-based methods of ancestral reconstruction in the simulation study. Independent Evolution also yielded Much more accurate estimates of ancestral (i.e. fossil) primate brain and body sizes than the other methods of ancestral reconstruction.
|Title:||Inferring macro-evolutionary patterns using an adaptive peak model of evolution|
|Keywords:||adaptation, adaptive peak, ancestral reconstruction, Brownian motion, comparative method, Ornstein-Uhlenbeck, phylogenetic analysis, PHYLOGENETICALLY INDEPENDENT CONTRASTS, ANCESTRAL CHARACTER STATES, RELATIVE BRAIN SIZE, BODY-MASS EVOLUTION, CORRELATED EVOLUTION, COMPUTER-SIMULATION, BROWNIAN-MOTION, PHYLOGENIES, RECONSTRUCTION, ADAPTATION|
|UCL classification:||UCL > School of Arts and Social Sciences > Faculty of Social and Historical Sciences > Anthropology|
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