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Pipeline Comparison for the Pre-Processing of Resting-State Data in Epilepsy

De Blasi, B; Galazzo, IB; Pasetto, L; Storti, SF; Koepp, M; Barnes, A; Menegaz, G; (2018) Pipeline Comparison for the Pre-Processing of Resting-State Data in Epilepsy. In: 2018 26th European Signal Processing Conference (EUSIPCO) Conference Proceedings. (pp. pp. 1137-1141). IEEE Green open access

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Abstract

Noise removal is a critical step to recover the signal of interest from resting-state fMRI data. Several pre-processing pipelines have been developed mainly based on nuisance regression or independent component analysis. The aim of this work was to evaluate the ability in removing spurious non-BO LD signals of different cleaning pipelines when applied to a dataset of healthy controls and temporal lobe epilepsy patients. Increased tSNR and power spectral density in the resting-state frequency range (0.01-0.1 Hz) were found for all pre-processing pipelines with respect to the minimally pre-processed data, suggesting a positive gain in terms of temporal properties when optimal cleaning procedures are applied to the acquired fMRI data. All the pre-processing pipelines considered were able to recover the DMN through group ICA. By visually comparing this network across all the pipelines and groups, we found that AROMA, SPM12, FIX and FIXMC were able to better delineate the posterior cingulate cortex.

Type: Proceedings paper
Title: Pipeline Comparison for the Pre-Processing of Resting-State Data in Epilepsy
Event: European Signal Processing Conference (EUSIPCO)
Location: Rome, ITALY
Dates: 03 September 2018 - 07 September 2018
Open access status: An open access version is available from UCL Discovery
DOI: 10.23919/EUSIPCO.2018.8553119
Publisher version: https://doi.org/10.23919/EUSIPCO.2018.8553119
Language: English
Additional information: This version is the author accepted manuscript. For information on re-use, please refer to the publisher’s terms and conditions.
Keywords: Pipelines, Standards, Functional magnetic resonance imaging, Cleaning, Time series analysis, Spectral analysis, Epilepsy
UCL classification: UCL
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Brain Sciences
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Brain Sciences > UCL Queen Square Institute of Neurology
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Brain Sciences > UCL Queen Square Institute of Neurology > Clinical and Experimental Epilepsy
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Medical Sciences
UCL > Provost and Vice Provost Offices > School of Life and Medical Sciences > Faculty of Medical Sciences > Div of Medicine
UCL > Provost and Vice Provost Offices > UCL BEAMS
UCL > Provost and Vice Provost Offices > UCL BEAMS > Faculty of Engineering Science
UCL > Provost and Vice Provost Offices > UCL BEAMS > Faculty of Engineering Science > Dept of Chemical Engineering
URI: https://discovery.ucl.ac.uk/id/eprint/10066281
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